BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144430.8 - phase: 0 /pseudo
(91 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL75999.1| putative polyprotein [Zea mays] 48 5e-05
ref|XP_465515.1| hypothetical protein [Oryza sativa (japonica cu... 45 3e-04
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 44 0.001
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 44 0.001
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 42 0.004
ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cu... 42 0.005
ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica c... 42 0.005
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 41 0.009
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 41 0.009
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 40 0.011
gb|AAS55772.2| hypothetical protein [Oryza sativa (japonica cult... 40 0.011
ref|NP_916972.1| P0445E10.23 [Oryza sativa (japonica cultivar-gr... 40 0.015
dbj|BAD82163.1| cyst nematode resistance protein-like protein [O... 40 0.015
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 40 0.019
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 40 0.019
ref|XP_462700.1| OSJNBa0079F16.5 [Oryza sativa (japonica cultiva... 40 0.019
dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sat... 40 0.019
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 40 0.019
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 39 0.025
ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (j... 39 0.033
>gb|AAL75999.1| putative polyprotein [Zea mays]
Length = 2749
Score = 48.1 bits (113), Expect = 5e-05
Identities = 29/92 (31%), Positives = 40/92 (42%), Gaps = 12/92 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFD-NINFFLEHN-----LGW 55
L KRGM + C C+ E + H L+ C F R W + N+ F + L W
Sbjct: 2612 LQKRGMDHPERCPLCDQDQETLDHMLIGCVFAREFWFKLLLQVNLQFLAPQSEDSAFLEW 2671
Query: 56 WIII-----GLDRQ-LPHLFLSAVWLLWMARN 81
W ++ G+ R L L + VW LW RN
Sbjct: 2672 WRMLCIKVSGIARDGLNSLVILGVWTLWKQRN 2703
>ref|XP_465515.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|47496869|dbj|BAD19833.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 162
Score = 45.4 bits (106), Expect = 3e-04
Identities = 23/86 (26%), Positives = 38/86 (43%), Gaps = 12/86 (13%)
Query: 8 SPTDVCTRCNSTSEDVFHCLLDCAFPRNLW------LAISFDNINFFLEHNLGWW----- 56
S +++C C E H L+DCAF R +W L + +++ + L WW
Sbjct: 48 SYSEICPLCGIEPETAHHLLMDCAFARQVWSSIWSKLGLHMPSLSLYPGLLLDWWEACRK 107
Query: 57 -IIIGLDRQLPHLFLSAVWLLWMARN 81
++ R LF+ W +W+ RN
Sbjct: 108 ELVKEQRRNFDGLFIYTAWGIWLQRN 133
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 43.5 bits (101), Expect = 0.001
Identities = 27/85 (31%), Positives = 41/85 (47%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAISFDN-INFFL-EHNLG-WWIIIG 60
KR + +D C C ED H L C ++LWLA+ N ++ + +H LG W+
Sbjct: 1442 KRNLEISDTCVICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNR 1501
Query: 61 L----DRQLPHLFLSAVWLLWMARN 81
L D + P +FL +W +W N
Sbjct: 1502 LALLPDHEQP-MFLMVLWRIWFVHN 1525
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 43.5 bits (101), Expect = 0.001
Identities = 30/95 (31%), Positives = 41/95 (42%), Gaps = 12/95 (12%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLA------ISFDNINFFLEHNLGWWI 57
KR + +D+C C ED H L C RNLW A IS + N N WI
Sbjct: 584 KRKLEQSDICLVCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNLC---NDPGWI 640
Query: 58 IIGLDRQLPH---LFLSAVWLLWMARNRACIAQEP 89
L+ L + +FL +W +W RN ++P
Sbjct: 641 FDQLEILLDYERTVFLLILWRIWFVRNEIVHGKQP 675
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 42.0 bits (97), Expect = 0.004
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 3 HKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNLGWWIIIGL 61
++R +S T VC C E + H L DC +W + D I F +L WI L
Sbjct: 25 YRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLVPRDQIRQFFTASLLEWIYKNL 84
Query: 62 DRQ--LPHLFLSAVWLLWMAR 80
+ P +F+ AVW W R
Sbjct: 85 RERGSWPTVFVMAVWWGWKWR 105
>ref|XP_550075.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|54290304|dbj|BAD61304.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 385
Score = 41.6 bits (96), Expect = 0.005
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI----SFDNINFFLEHNLG--- 54
L RG +C C E H L +C + R +W AI + + +N L H
Sbjct: 258 LATRGWPNGSICPLCRHRQETAIHLLAECRYTRRIWGAIAEWTACEQLNPSLWHQASTVS 317
Query: 55 -WWIIIGLDRQLPH-----LFLSAVWLLWMARNRACIAQE 88
WW + P L L W +W RNR Q+
Sbjct: 318 EWWEATANTKDAPKKALRTLTLLVAWEIWNERNRRTFQQK 357
>ref|XP_470208.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|27497213|gb|AAO17357.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15451617|gb|AAK98741.1| Hypothetical protein similar
to putative retroelements [Oryza sativa]
Length = 387
Score = 41.6 bits (96), Expect = 0.005
Identities = 30/95 (31%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-FDNINFFLE-HNLGWWIII 59
LHK+ + PT C CN+ ED +H L C W I I+ + HNL
Sbjct: 256 LHKKTILPTPTCELCNANLEDTYHIFLRCPMAAAFWNMIQIIPEISSLSDLHNL------ 309
Query: 60 GLDRQLP-----HLFLSAVWLLWMARNRACIAQEP 89
L LP FL W LW RN P
Sbjct: 310 ELSGPLPTFLSSTFFLLCCWRLWNHRNEVVFQNLP 344
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 40.8 bits (94), Expect = 0.009
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWL-AISFDNINFFLEHNLGWWIIIGLD 62
+R M+ +DVC C SE + H L DC +W+ + F E +L W+ L
Sbjct: 376 RRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLK 435
Query: 63 -------RQLPHLFLSAVWLLWMAR 80
R P LF VW W R
Sbjct: 436 ERSDSERRSWPTLFALTVWWGWKWR 460
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 40.8 bits (94), Expect = 0.009
Identities = 26/85 (30%), Positives = 35/85 (40%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWL-AISFDNINFFLEHNLGWWIIIGLD 62
+R M+ +DVC C SE + H L DC +W+ + F E +L W+ L
Sbjct: 363 RRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETSLLEWMYGNLK 422
Query: 63 -------RQLPHLFLSAVWLLWMAR 80
R P LF VW W R
Sbjct: 423 ERSDSERRSWPTLFALTVWWGWKWR 447
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 40.4 bits (93), Expect = 0.011
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 1 MLHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-------------FDNINF 47
+L RGM C C E + H L C+FPR +W + + N+
Sbjct: 920 LLSYRGMKLDSRCQTCGCEGESIQHVLFSCSFPRQVWAMSNIHVPLLGFECGSVYANLYH 979
Query: 48 FL--EHNLGWWIIIGLDRQLPHLFLSAVWLLWMARN 81
FL NL W + L R P + +W +W RN
Sbjct: 980 FLINRDNLKW--PVELRRSFPWI----IWRIWKNRN 1009
>gb|AAS55772.2| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 493
Score = 40.4 bits (93), Expect = 0.011
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW------LAISFDNINFFLEHNLGW 55
L RG + +C C E H L++CAF + +W + + F L W
Sbjct: 369 LQLRGWDNSHICPLCGVEPETATHLLMECAFAKQVWRQIWLKAGLHMPVASTFDGDMLRW 428
Query: 56 WIIIGLD------RQLPHLFLSAVWLLWMARN 81
W + R LF+ W +W+ RN
Sbjct: 429 WSTCRREMAKEQRRNFDGLFICTAWGIWLQRN 460
>ref|NP_916972.1| P0445E10.23 [Oryza sativa (japonica cultivar-group)]
Length = 484
Score = 40.0 bits (92), Expect = 0.015
Identities = 27/102 (26%), Positives = 41/102 (39%), Gaps = 12/102 (11%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNL-----GW 55
L KRG +C C+ ED H L+ C + +W L N++F + L W
Sbjct: 314 LAKRGWPHDPLCALCSIDMEDCHHLLVKCPYTNRVWSLLRDRINVHFDIPGRLDLSLADW 373
Query: 56 WIIIGLDRQLPH------LFLSAVWLLWMARNRACIAQEPST 91
W + Q + F+ WL+W RN Q+ +T
Sbjct: 374 WQLARTRFQTRYSKAFDTFFMLVCWLVWKERNARVFDQKFNT 415
>dbj|BAD82163.1| cyst nematode resistance protein-like protein [Oryza sativa
(japonica cultivar-group)] gi|56784986|dbj|BAD82516.1|
cyst nematode resistance protein-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 165
Score = 40.0 bits (92), Expect = 0.015
Identities = 27/102 (26%), Positives = 41/102 (39%), Gaps = 12/102 (11%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW-LAISFDNINFFLEHNL-----GW 55
L KRG +C C+ ED H L+ C + +W L N++F + L W
Sbjct: 39 LAKRGWPHDPLCALCSIDMEDCHHLLVKCPYTNRVWSLLRDRINVHFDIPGRLDLSLADW 98
Query: 56 WIIIGLDRQLPH------LFLSAVWLLWMARNRACIAQEPST 91
W + Q + F+ WL+W RN Q+ +T
Sbjct: 99 WQLARTRFQTRYSKAFDTFFMLVCWLVWKERNARVFDQKFNT 140
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 39.7 bits (91), Expect = 0.019
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW----LAISFDNINFFLEHNLGWWI 57
L RG+ D C C++ +E + H L +C R +W L+ + + + N+ I
Sbjct: 1051 LRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLI 1110
Query: 58 IIGLDRQLPH--LFLS--AVWLLWMARN 81
+ LPH F+S +W LW RN
Sbjct: 1111 DLTQQNDLPHHLRFVSPWILWFLWKNRN 1138
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 39.7 bits (91), Expect = 0.019
Identities = 25/94 (26%), Positives = 40/94 (41%), Gaps = 18/94 (19%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAIS-------------FDNINFF 48
L RG+ D C C E + H L C F R +W A+S F NIN
Sbjct: 1025 LRSRGIRTADGCLFCKEEIETINHLLFQCPFARQVW-ALSLIQAPATGFGTSIFSNINHV 1083
Query: 49 LEHNLGWWIIIGLDRQLPHLFLSAVWLLWMARNR 82
++++ + G+ R + + +W +W RN+
Sbjct: 1084 IQNSQNF----GIPRHMRTVSPWLLWEIWKNRNK 1113
>ref|XP_462700.1| OSJNBa0079F16.5 [Oryza sativa (japonica cultivar-group)]
gi|39546257|emb|CAD39830.3| OSJNBa0079F16.5 [Oryza
sativa (japonica cultivar-group)]
Length = 153
Score = 39.7 bits (91), Expect = 0.019
Identities = 24/92 (26%), Positives = 35/92 (37%), Gaps = 12/92 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLAI-SFDNINFFLEHNLG-----W 55
L KRG VC C ED H + C + +W I + + F L + G W
Sbjct: 22 LSKRGWPNQQVCQLCLVVDEDYEHLFVSCTYTTRVWRMIKGWIGVGFLLPYESGLDLGEW 81
Query: 56 WIII------GLDRQLPHLFLSAVWLLWMARN 81
W+ + + L L W++W RN
Sbjct: 82 WLAMRQKFRNNYMDAIDSLVLLICWMVWKERN 113
>dbj|BAD72443.1| cyst nematode resistance protein-like [Oryza sativa (japonica
cultivar-group)]
Length = 185
Score = 39.7 bits (91), Expect = 0.019
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 13/100 (13%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWLA----ISFDNINFFLEHN----L 53
L RG +C C T E H L C + R +W A ++ + +N L
Sbjct: 53 LATRGWPNGSICPLCRRTQETALHLLAACRYTRRVWAALAEWVTCEQLNPSQWRQTSTVL 112
Query: 54 GWWIIIGLDRQLPH-----LFLSAVWLLWMARNRACIAQE 88
WW ++ P L L W +W RNR Q+
Sbjct: 113 DWWEATANIQETPKKTLRTLMLLVAWKIWNERNRRTFQQK 152
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 39.7 bits (91), Expect = 0.019
Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 2 LHKRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLW----LAISFDNINFFLEHNLGWWI 57
L RG+ D C C++ +E + H L +C R +W L+ + + + N+ I
Sbjct: 1072 LRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLI 1131
Query: 58 IIGLDRQLPH--LFLS--AVWLLWMARN 81
+ LPH F+S +W LW RN
Sbjct: 1132 DLTQQNDLPHHLRFVSPWILWFLWKNRN 1159
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 39.3 bits (90), Expect = 0.025
Identities = 24/85 (28%), Positives = 34/85 (39%), Gaps = 8/85 (9%)
Query: 4 KRGMSPTDVCTRCNSTSEDVFHCLLDCAFPRNLWL-AISFDNINFFLEHNLGWWIIIGLD 62
+R M TDVC C E + H L DC +WL + F +L W+ L
Sbjct: 96 RRHMGDTDVCQVCRGAKETIIHVLRDCPAMSGIWLRLVPARERERFFTRSLLEWLYENLH 155
Query: 63 RQ-------LPHLFLSAVWLLWMAR 80
++ P LF ++W W R
Sbjct: 156 QKEDPSRGGWPTLFAMSIWWGWKWR 180
>ref|XP_463102.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28875978|gb|AAO59987.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|28269466|gb|AAO38009.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1349
Score = 38.9 bits (89), Expect = 0.033
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 12 VCTRCNSTSEDVFHCLLDCAFPRNLWLAI----SFDNINFFLEHNLG-WW--IIIGLDRQ 64
+C+ CNS ED H +C F +W I +F L+ NL WW RQ
Sbjct: 1239 ICSLCNSAFEDAAHLAKECPFTVTVWTQICIWMNFQLPQHHLQGNLSDWWSSFCTISPRQ 1298
Query: 65 LPHLFLSAV----WLLWMARNRACIAQ 87
+ L A+ W +W+ RNR Q
Sbjct: 1299 NRNKVLGALITTWWNVWLERNRRIFQQ 1325
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.331 0.141 0.509
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,357,675
Number of Sequences: 2540612
Number of extensions: 6170815
Number of successful extensions: 14853
Number of sequences better than 10.0: 107
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 14768
Number of HSP's gapped (non-prelim): 112
length of query: 91
length of database: 863,360,394
effective HSP length: 67
effective length of query: 24
effective length of database: 693,139,390
effective search space: 16635345360
effective search space used: 16635345360
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144430.8