BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144430.5 - phase: 0 /pseudo
(125 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66003.1| unknown [Arabidopsis thaliana] gi|18398400|ref|NP... 119 2e-26
ref|NP_973951.1| tobamovirus multiplication protein 2B (TOM2B) [... 119 2e-26
ref|NP_849740.1| tobamovirus multiplication protein 2B (TOM2B) [... 119 2e-26
pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|g... 119 2e-26
dbj|BAD43213.1| hypothetical protein [Arabidopsis thaliana] 119 2e-26
dbj|BAD28190.1| putative tobamovirus multiplication protein 2B [... 119 2e-26
gb|AAU44226.1| hypothetical protein [Oryza sativa (japonica cult... 38 0.049
gb|AAA97973.1| Hypothetical protein F21C10.7 [Caenorhabditis ele... 37 0.083
gb|AAD07152.1| methyl-accepting chemotaxis transducer (tlpC) [He... 35 0.41
emb|CAE72104.1| Hypothetical protein CBG19196 [Caenorhabditis br... 35 0.54
ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Heli... 34 0.70
gb|AAV84149.1| tat protein [Human immunodeficiency virus 1] 33 1.2
ref|YP_200401.1| leucin rich protein [Xanthomonas oryzae pv. ory... 33 1.2
ref|XP_642339.1| hypothetical protein DDB0205425 [Dictyostelium ... 33 1.2
emb|CAG87737.1| unnamed protein product [Debaryomyces hansenii C... 33 1.6
gb|AAF12778.1| 56 kDa type-specific antigen [Orientia tsutsugamu... 33 1.6
gb|EAA66109.1| hypothetical protein AN0236.2 [Aspergillus nidula... 33 2.0
emb|CAG10556.1| unnamed protein product [Tetraodon nigroviridis] 33 2.0
ref|ZP_00528777.1| Mce4/Rv3499c/MTV023.06c protein [Chlorobium p... 32 2.7
gb|EAA57893.1| hypothetical protein AN6553.2 [Aspergillus nidula... 32 2.7
>gb|AAM66003.1| unknown [Arabidopsis thaliana] gi|18398400|ref|NP_564397.1|
tobamovirus multiplication protein 2B (TOM2B)
[Arabidopsis thaliana]
Length = 131
Score = 119 bits (298), Expect = 2e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
+GGD +AKAVVA+QISQ V ST+NLLHLM+ SS +QA+L KLPKNLLAK S K T Q L
Sbjct: 12 SGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQAL 71
Query: 92 EQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
QLP+VISSLDAH+E+GL + L TV QLL NM
Sbjct: 72 AQLPQVISSLDAHIESGLHSGVHLNTVTQLLENM 105
>ref|NP_973951.1| tobamovirus multiplication protein 2B (TOM2B) [Arabidopsis
thaliana]
Length = 125
Score = 119 bits (298), Expect = 2e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
+GGD +AKAVVA+QISQ V ST+NLLHLM+ SS +QA+L KLPKNLLAK S K T Q L
Sbjct: 12 SGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQAL 71
Query: 92 EQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
QLP+VISSLDAH+E+GL + L TV QLL NM
Sbjct: 72 AQLPQVISSLDAHIESGLHSGVHLNTVTQLLENM 105
>ref|NP_849740.1| tobamovirus multiplication protein 2B (TOM2B) [Arabidopsis
thaliana] gi|32698522|dbj|BAC24020.2| tobamovirus
multiplication 2B [Arabidopsis thaliana]
Length = 122
Score = 119 bits (298), Expect = 2e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
+GGD +AKAVVA+QISQ V ST+NLLHLM+ SS +QA+L KLPKNLLAK S K T Q L
Sbjct: 12 SGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQAL 71
Query: 92 EQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
QLP+VISSLDAH+E+GL + L TV QLL NM
Sbjct: 72 AQLPQVISSLDAHIESGLHSGVHLNTVTQLLENM 105
>pir||F86448 F5D14.14 protein - Arabidopsis thaliana gi|8920612|gb|AAF81334.1|
Contains similarity to a hypothetical protein T25K17.150
gi|7487424 from Arabidopsis thaliana BAC T25K17
gb|AL049171
Length = 536
Score = 119 bits (298), Expect = 2e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
+GGD +AKAVVA+QISQ V ST+NLLHLM+ SS +QA+L KLPKNLLAK S K T Q L
Sbjct: 12 SGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQAL 71
Query: 92 EQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
QLP+VISSLDAH+E+GL + L TV QLL NM
Sbjct: 72 AQLPQVISSLDAHIESGLHSGVHLNTVTQLLENM 105
>dbj|BAD43213.1| hypothetical protein [Arabidopsis thaliana]
Length = 123
Score = 119 bits (298), Expect = 2e-26
Identities = 63/94 (67%), Positives = 74/94 (78%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
+GGD +AKAVVA+QISQ V ST+NLLHLM+ SS +QA+L KLPKNLLAK S K T Q L
Sbjct: 12 SGGDRTAKAVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQAL 71
Query: 92 EQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
QLP+VISSLDAH+E+GL + L TV QLL NM
Sbjct: 72 AQLPQVISSLDAHIESGLHSGVHLNTVTQLLENM 105
>dbj|BAD28190.1| putative tobamovirus multiplication protein 2B [Oryza sativa
(japonica cultivar-group)]
Length = 130
Score = 119 bits (298), Expect = 2e-26
Identities = 65/101 (64%), Positives = 74/101 (72%)
Query: 25 MSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTV 84
M+ A G A+A VAEQI+Q VQSTSNLL LM+ SSPAQA L KLPK LLAK S
Sbjct: 1 MAAAAAGGGRGGGAQAAVAEQIAQAVQSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLA 60
Query: 85 KNTQQVLEQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
KNT QVL QLP VISSLDA+M+ LQ+ Q+KTV QLL+NM
Sbjct: 61 KNTGQVLHQLPSVISSLDAYMDASLQSASQIKTVTQLLSNM 101
>gb|AAU44226.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 38.1 bits (87), Expect = 0.049
Identities = 20/66 (30%), Positives = 33/66 (49%)
Query: 1 MKKMEQRRQDPPTAANRRRPLWRPMSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHLM 60
M + ++++ PP A R WR ST+ AA D S A+ + ++ TSN ++ +
Sbjct: 72 MVEEKKKKTTPPHARGSNRTTWRSTSTKLAAAVCDRSPLALKGDHRRSRLKPTSNFINKV 131
Query: 61 QHSSPA 66
H PA
Sbjct: 132 NHRLPA 137
>gb|AAA97973.1| Hypothetical protein F21C10.7 [Caenorhabditis elegans]
gi|17559996|ref|NP_505362.1| titin N2 (5J601)
[Caenorhabditis elegans] gi|7499550|pir||T29340
hypothetical protein F21C10.7 - Caenorhabditis elegans
Length = 2541
Score = 37.4 bits (85), Expect = 0.083
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 44 EQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVLEQLPRVISSLDA 103
+Q+SQ V+ TS LL +++ Q ++V++ +N+ V+T N Q+ EQ+ R I L
Sbjct: 679 DQLSQKVELTS-LLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEQVRRKIEDLKV 737
Query: 104 HMENGLQNVPQLKTV 118
++ +++ KT+
Sbjct: 738 EVDKKSEHLEACKTL 752
>gb|AAD07152.1| methyl-accepting chemotaxis transducer (tlpC) [Helicobacter pylori
26695] gi|7428939|pir||B64530 methyl-accepting
chemotaxis transducer (tlpC) - Helicobacter pylori
(strain 26695) gi|15644712|ref|NP_206882.1|
methyl-accepting chemotaxis transducer (tlpC)
[Helicobacter pylori 26695]
Length = 673
Score = 35.0 bits (79), Expect = 0.41
Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 36 NSAKAV--VAEQISQTVQSTSNLLHLMQHSSPAQAKLV-KLPKNLLAKVSTVKNTQQVLE 92
N KA+ + ++IS ++++ + + H S V L K + ++KNT Q LE
Sbjct: 463 NMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLE 522
Query: 93 QLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
++ +I+++D+ + + +K+VV ++ ++
Sbjct: 523 EITNIITTIDSKSQEMISQGEDIKSVVDMIRDI 555
>emb|CAE72104.1| Hypothetical protein CBG19196 [Caenorhabditis briggsae]
Length = 2696
Score = 34.7 bits (78), Expect = 0.54
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 44 EQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVLEQLPRVISSLDA 103
+Q+SQ V+ S LL +++ Q ++V++ +N+ V+T N Q+ E + R I L
Sbjct: 757 DQLSQKVELAS-LLKIVEDVQIWQEEMVEIIRNMNQVVTTQSNNQEQFEHVRRKIEDLKV 815
Query: 104 HMENGLQNVPQLKTVVQ 120
++ +++ KT+ Q
Sbjct: 816 EVDKKSEHLEACKTLSQ 832
>ref|NP_222797.1| methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
gi|4154575|gb|AAD05650.1| methyl-accepting chemotaxis
protein (MCP) [Helicobacter pylori J99]
gi|7443335|pir||A71978 methyl-accepting chemotaxis
protein (MCP) - Helicobacter pylori (strain J99)
Length = 673
Score = 34.3 bits (77), Expect = 0.70
Identities = 21/93 (22%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 36 NSAKAV--VAEQISQTVQSTSNLLHLMQHSSPAQAKLV-KLPKNLLAKVSTVKNTQQVLE 92
N KA+ + ++IS ++++ + + H S V L K + ++KNT Q LE
Sbjct: 463 NMEKALNTLGQEISSMLKASLGFANALNHESKDLKTCVDNLTKTAHKQERSLKNTTQSLE 522
Query: 93 QLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
++ +I+ +D+ + + +K+VV ++ ++
Sbjct: 523 EITNIITMIDSKSQEMISQGEDIKSVVDMIRDI 555
>gb|AAV84149.1| tat protein [Human immunodeficiency virus 1]
Length = 100
Score = 33.5 bits (75), Expect = 1.2
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 2 KKMEQRRQDPPTAANRRRPLWRPMS-TQNAATGGDNSAKAV 41
KK QRR PP++ + + P+ +P+S T+ TG + S K V
Sbjct: 50 KKRRQRRSAPPSSEDHQNPISKPLSRTRGDQTGSEESKKKV 90
>ref|YP_200401.1| leucin rich protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|58425979|gb|AAW75016.1| leucin rich protein
[Xanthomonas oryzae pv. oryzae KACC10331]
Length = 656
Score = 33.5 bits (75), Expect = 1.2
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 35 DNSAKAVVAEQISQTVQS---------TSNLLHLMQHSSPAQAKLVKLPKNL--LAKVST 83
D A +AE++S ++S T L HL QH + A L+KLP ++ A + T
Sbjct: 198 DMLENATLAERVSLELRSVPLPHFPEQTFRLSHL-QHITIDAAGLMKLPADMQKFAALET 256
Query: 84 VKNTQQVLEQLPRVISSLDAHMENGLQNVPQLKTVVQLLA 123
+ + L LP ISSL E + P LK + + LA
Sbjct: 257 LTLARNPLRSLPASISSLRRLRELSILACPTLKELPESLA 296
>ref|XP_642339.1| hypothetical protein DDB0205425 [Dictyostelium discoideum]
gi|60470390|gb|EAL68370.1| hypothetical protein
DDB0205425 [Dictyostelium discoideum]
Length = 588
Score = 33.5 bits (75), Expect = 1.2
Identities = 23/115 (20%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 11 PPTAANRRRPLWRPMSTQNAATGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKL 70
PPT+++ + P+ ++++ N + T +T+N L S+P +
Sbjct: 387 PPTSSSTSNAVSSPLPQTSSSSSSSNVTSPPFPTTTTTTTTTTNNNETLQSTSTPPTFQT 446
Query: 71 VKLPKNLLAKVSTVKNTQQVLEQLPRVISSLDAHMENGLQNVPQLKTVVQLLANM 125
+ + + + T+KN ++V E+ P +IS + + + Q++ L +Q+L+ +
Sbjct: 447 L---TSSVIETFTIKNPKKVFEKHPNLISRVVELLSHSHQSIQLLS--IQILSTL 496
>emb|CAG87737.1| unnamed protein product [Debaryomyces hansenii CBS767]
gi|50421905|ref|XP_459511.1| unnamed protein product
[Debaryomyces hansenii]
Length = 1544
Score = 33.1 bits (74), Expect = 1.6
Identities = 16/80 (20%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 40 AVVAEQISQTVQSTSNLLHLMQHSSPA-QAKLVKLPKNLLAKVSTVKNTQQVLEQLPRVI 98
+++A + S+T + L ++ +P+ K+ ++ N +AK + + +P ++
Sbjct: 922 SLIAVRDSETARIPRTLFEMLSLRNPSIMVKVSRIVANKMAKKDNIGIPSTISSNVPLIV 981
Query: 99 SSLDAHMENGLQNVPQLKTV 118
++ D+H+ N + + L TV
Sbjct: 982 TNTDSHISNDYKTITILPTV 1001
>gb|AAF12778.1| 56 kDa type-specific antigen [Orientia tsutsugamushi]
Length = 477
Score = 33.1 bits (74), Expect = 1.6
Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 11/119 (9%)
Query: 6 QRRQDPPTAANRRRPLWRPMSTQNAATGGDNSAKAVVAEQISQTV-QSTSNLLHLMQHSS 64
QR Q P A WR + AA N A + +S + Q S++ HL
Sbjct: 225 QRAQQPANFAIHNHDQWRHLVVGLAALSNANKPSASPVKVLSDKITQIYSDIKHL----- 279
Query: 65 PAQAKLVKLPKNLLAKVSTVKNTQQVLEQLPRVI----SSLDAHMENGLQNVPQLKTVV 119
A + +P L ++V+ Q +++L V+ S D ++ N N QL V+
Sbjct: 280 -ADIAGIDVPDTSLPNSASVEQIQNKMQELNDVLEELRDSFDGYISNAFANQIQLNFVM 337
>gb|EAA66109.1| hypothetical protein AN0236.2 [Aspergillus nidulans FGSC A4]
gi|67515909|ref|XP_657840.1| hypothetical protein
AN0236_2 [Aspergillus nidulans FGSC A4]
gi|49084332|ref|XP_404373.1| hypothetical protein
AN0236.2 [Aspergillus nidulans FGSC A4]
Length = 1049
Score = 32.7 bits (73), Expect = 2.0
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 27 TQNAATGGDNSAKAVVAEQ----ISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVS 82
TQN A S+ V AEQ IS + + L H+ +PA+ L +NL ++ S
Sbjct: 428 TQNNAQPNRPSS-LVHAEQTRSPISPSREQGQRLEHIATQGTPARGVDAPLKENLFSQES 486
Query: 83 TVKNTQQVLEQLPRVISSLDAHMENGLQNVPQ 114
+++Q +L + +V S A G QN PQ
Sbjct: 487 QGRDSQYLLRLMQQVRVSPGAGPNQGPQNQPQ 518
>emb|CAG10556.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1310
Score = 32.7 bits (73), Expect = 2.0
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 32 TGGDNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVL 91
T DN++ + Q+ + +STSN LH + + ++K+V L +NL + T+K +Q
Sbjct: 857 TEQDNTSMLI--SQLRENKESTSNDLHGLIIFTLKESKIVHLEQNLKSNSETMKGLEQKT 914
Query: 92 EQ 93
EQ
Sbjct: 915 EQ 916
>ref|ZP_00528777.1| Mce4/Rv3499c/MTV023.06c protein [Chlorobium phaeobacteroides DSM
266] gi|67775315|gb|EAM34983.1| Mce4/Rv3499c/MTV023.06c
protein [Chlorobium phaeobacteroides DSM 266]
Length = 292
Score = 32.3 bits (72), Expect = 2.7
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 35 DNSAKAVVAEQISQTVQSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQVLEQL 94
D +AE +S +++ L + + +S L KL L + KNT+Q +E+L
Sbjct: 176 DEKMGTELAETVSSLKTTSAELSKVSREASHGNGLLPKL----LNDKAMAKNTEQTIERL 231
Query: 95 PRVIS---SLDAHMENGLQNVPQLKTVVQLLANM 125
R S SL A + NG + QL+ L N+
Sbjct: 232 NRAASETESLIAKINNGQGTIGQLQANPALYNNL 265
>gb|EAA57893.1| hypothetical protein AN6553.2 [Aspergillus nidulans FGSC A4]
gi|67540766|ref|XP_664157.1| hypothetical protein
AN6553_2 [Aspergillus nidulans FGSC A4]
gi|49098679|ref|XP_410690.1| hypothetical protein
AN6553.2 [Aspergillus nidulans FGSC A4]
Length = 801
Score = 32.3 bits (72), Expect = 2.7
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 51 QSTSNLLHLMQHSSPAQAKLVKLPKNLLAKVSTVKNTQQ-----VLEQLPRVISSLDAHM 105
+STS L HL + S A + + A + + + QQ +EQ R I++ +H
Sbjct: 381 ESTSALQHLHKISIMANRNGDRAVSAMSAIIEALAHLQQGYSSDSIEQAQRAIAAARSHQ 440
Query: 106 ENG-LQNVPQLKTVVQLL 122
N L++VPQL T+VQ++
Sbjct: 441 LNDELRHVPQLTTLVQIV 458
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.311 0.122 0.327
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,509,562
Number of Sequences: 2540612
Number of extensions: 5340642
Number of successful extensions: 19088
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 19058
Number of HSP's gapped (non-prelim): 70
length of query: 125
length of database: 863,360,394
effective HSP length: 101
effective length of query: 24
effective length of database: 606,758,582
effective search space: 14562205968
effective search space used: 14562205968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144430.5