BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.8 + phase: 0 /pseudo
(106 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD83466.1| hypothetical protein [Nicotiana tabacum] gi|5701... 152 1e-36
emb|CAA27743.1| URF-1 [Citrullus lanatus] gi|1363478|pir||S57850... 137 8e-32
dbj|BAA99324.1| orf117 [Beta vulgaris subsp. vulgaris] gi|983840... 134 7e-31
sp|P08834|NU1M_CITLA NADH-ubiquinone oxidoreductase chain 1 (NAD... 134 7e-31
dbj|BAD83532.1| NADH dehydrogenase subunit 1 [Nicotiana tabacum]... 102 3e-21
sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1 (NAD... 102 3e-21
gb|AAA70292.1| NADH dehydrogenase (ubiquinone) 102 3e-21
gb|AAW63657.1| NADH dehydrogenase subunit 1 [Liriodendron tulipi... 99 2e-20
dbj|BAD66765.1| NADH dehydrogenase subunit 1 [Beta vulgaris subs... 97 1e-19
gb|AAW63656.1| NADH dehydrogenase subunit 1 [Amborella trichopoda] 96 2e-19
gb|AAW63662.1| NADH dehydrogenase subunit 1 [Eichhornia crassipes] 96 3e-19
gb|AAR91205.1| NADH dehydrogenase subunit 1 [Zea mays] gi|407951... 95 5e-19
dbj|BAA99457.1| NADH dehydrogenase subunit 1 [Beta vulgaris subs... 95 5e-19
sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1 (NAD... 94 6e-19
sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1 (NAD... 94 6e-19
gb|AAV67795.1| NADH dehydrogenase subunit I [Zea mays] 94 6e-19
emb|CAA57940.1| mitochondrial NADH dehydrogenase [Arabidopsis th... 94 6e-19
dbj|BAC98913.1| NADH dehydrogenase subunit 1 [Brassica napus] 94 6e-19
gb|AAW63663.1| NADH dehydrogenase subunit 1 [Agave attenuata] 94 6e-19
dbj|BAC19852.1| NADH dehydrogenase subunit 1 [Oryza sativa (japo... 94 8e-19
>dbj|BAD83466.1| hypothetical protein [Nicotiana tabacum]
gi|57013929|ref|YP_173402.1| hypothetical protein
NitaMp056 [Nicotiana tabacum]
Length = 142
Score = 152 bits (385), Expect = 1e-36
Identities = 77/78 (98%), Positives = 77/78 (98%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNS LL
Sbjct: 46 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSSLL 105
Query: 61 AEANVPGSRGLILTETRG 78
AEANVPGSRGLILTETRG
Sbjct: 106 AEANVPGSRGLILTETRG 123
>emb|CAA27743.1| URF-1 [Citrullus lanatus] gi|1363478|pir||S57850 probable NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
watermelon mitochondrion
Length = 316
Score = 137 bits (344), Expect = 8e-32
Identities = 68/70 (97%), Positives = 68/70 (97%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL
Sbjct: 148 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 207
Query: 61 AEANVPGSRG 70
AEANVPG G
Sbjct: 208 AEANVPGXPG 217
>dbj|BAA99324.1| orf117 [Beta vulgaris subsp. vulgaris] gi|9838400|ref|NP_064013.1|
hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 117
Score = 134 bits (336), Expect = 7e-31
Identities = 72/88 (81%), Positives = 74/88 (83%), Gaps = 1/88 (1%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAE E VAGYNVEYARDAILNS LL
Sbjct: 31 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAERELVAGYNVEYARDAILNSSLL 90
Query: 61 AEANVPGSRGLILTETRGACWGTLHSSF 88
AEAN PG GLILTET G + +S F
Sbjct: 91 AEAN-PGVPGLILTETGGGLYQLQNSRF 117
>sp|P08834|NU1M_CITLA NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 316
Score = 134 bits (336), Expect = 7e-31
Identities = 67/70 (95%), Positives = 67/70 (95%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLL 60
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA DAILNSPLL
Sbjct: 148 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYAWDAILNSPLL 207
Query: 61 AEANVPGSRG 70
AEANVPG G
Sbjct: 208 AEANVPGXPG 217
>dbj|BAD83532.1| NADH dehydrogenase subunit 1 [Nicotiana tabacum]
gi|57013995|ref|YP_173351.1| NADH dehydrogenase subunit
1 [Nicotiana tabacum]
Length = 325
Score = 102 bits (253), Expect = 3e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221
>sp|Q01300|NU1M_PETHY NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1) gi|1334430|emb|CAA42946.1| nad1 [Petunia x hybrida]
Length = 325
Score = 102 bits (253), Expect = 3e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 221
>gb|AAA70292.1| NADH dehydrogenase (ubiquinone)
Length = 331
Score = 102 bits (253), Expect = 3e-21
Identities = 49/50 (98%), Positives = 50/50 (100%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY+
Sbjct: 178 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYS 227
>gb|AAW63657.1| NADH dehydrogenase subunit 1 [Liriodendron tulipifera]
Length = 64
Score = 99.4 bits (246), Expect = 2e-20
Identities = 48/49 (97%), Positives = 48/49 (97%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMF ISRLAETNRAPFDLPEAEAESVAGYNVEY
Sbjct: 16 MAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGYNVEY 64
>dbj|BAD66765.1| NADH dehydrogenase subunit 1 [Beta vulgaris subsp. vulgaris]
gi|54606698|dbj|BAD66721.1| NADH dehydrogenase subunit 1
[Beta vulgaris subsp. vulgaris]
Length = 325
Score = 96.7 bits (239), Expect = 1e-19
Identities = 47/50 (94%), Positives = 48/50 (96%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>gb|AAW63656.1| NADH dehydrogenase subunit 1 [Amborella trichopoda]
Length = 64
Score = 96.3 bits (238), Expect = 2e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY
Sbjct: 16 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEY 64
>gb|AAW63662.1| NADH dehydrogenase subunit 1 [Eichhornia crassipes]
Length = 64
Score = 95.5 bits (236), Expect = 3e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMFFIS LAETNRAP DLPEAEAESVAGYNVEY
Sbjct: 16 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPSDLPEAEAESVAGYNVEY 64
>gb|AAR91205.1| NADH dehydrogenase subunit 1 [Zea mays] gi|40795157|gb|AAR91201.1|
NADH dehydrogenase subunit 1 [Zea mays]
Length = 325
Score = 94.7 bits (234), Expect = 5e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMF I RLAETNRAP DLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFLIPRLAETNRAPSDLPEAEAESVAGYNVEYS 221
>dbj|BAA99457.1| NADH dehydrogenase subunit 1 [Beta vulgaris subsp. vulgaris]
gi|9838451|ref|NP_064011.1| NADH dehydrogenase subunit 1
[Beta vulgaris subsp. vulgaris]
Length = 325
Score = 94.7 bits (234), Expect = 5e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFIS LAETNRAPFDLPEAE E VAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFISCLAETNRAPFDLPEAERELVAGYNVEYS 221
>sp|Q01148|NU1M_WHEAT NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1)
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>sp|P31839|NU1M_OENBE NADH-ubiquinone oxidoreductase chain 1 (NADH dehydrogenase subunit
1) gi|66136|pir||DNOBU1 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - evening primrose mitochondrion
Length = 331
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 178 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 227
>gb|AAV67795.1| NADH dehydrogenase subunit I [Zea mays]
Length = 87
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/49 (93%), Positives = 46/49 (93%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMF I RLAETNRAP DLPEAEAESVAGYNVEY
Sbjct: 39 MAQKQIWSGIPLFPVLVMFLIPRLAETNRAPSDLPEAEAESVAGYNVEY 87
>emb|CAA57940.1| mitochondrial NADH dehydrogenase [Arabidopsis thaliana]
gi|45477072|sp|P92558|NU1M_ARATH NADH-ubiquinone
oxidoreductase chain 1 (NADH dehydrogenase subunit 1)
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>dbj|BAC98913.1| NADH dehydrogenase subunit 1 [Brassica napus]
Length = 325
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGYNVEY+
Sbjct: 172 MAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGYNVEYS 221
>gb|AAW63663.1| NADH dehydrogenase subunit 1 [Agave attenuata]
Length = 64
Score = 94.4 bits (233), Expect = 6e-19
Identities = 46/49 (93%), Positives = 46/49 (93%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 49
MAQKQIWSGIPLFPVLVMF I RLAETNRAP DLPEAEAESVAGYNVEY
Sbjct: 16 MAQKQIWSGIPLFPVLVMFLIPRLAETNRAPSDLPEAEAESVAGYNVEY 64
>dbj|BAC19852.1| NADH dehydrogenase subunit 1 [Oryza sativa (japonica
cultivar-group)]
Length = 327
Score = 94.0 bits (232), Expect = 8e-19
Identities = 46/50 (92%), Positives = 47/50 (94%)
Query: 1 MAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 50
MAQKQIWSGIPLFPVLVMFFI LAETNRAP DLPEAEAESVAGYNVEY+
Sbjct: 172 MAQKQIWSGIPLFPVLVMFFIPCLAETNRAPSDLPEAEAESVAGYNVEYS 221
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.138 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174,445,586
Number of Sequences: 2540612
Number of extensions: 6003423
Number of successful extensions: 14883
Number of sequences better than 10.0: 2834
Number of HSP's better than 10.0 without gapping: 2803
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 12077
Number of HSP's gapped (non-prelim): 2834
length of query: 106
length of database: 863,360,394
effective HSP length: 82
effective length of query: 24
effective length of database: 655,030,210
effective search space: 15720725040
effective search space used: 15720725040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144406.8