BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144406.5 - phase: 0 
         (47 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAR91110.1| hypothetical protein [Zea mays]                         73  2e-12
emb|CAG01450.1| unnamed protein product [Tetraodon nigroviridis]       33  2.7
ref|XP_420362.1| PREDICTED: similar to Fragile X mental retardat...    31  7.9

>gb|AAR91110.1| hypothetical protein [Zea mays]
          Length = 127

 Score = 72.8 bits (177), Expect = 2e-12
 Identities = 34/42 (80%), Positives = 35/42 (82%)

Query: 3  GRSRCPGRTRLLLTLEDHWKRPGTRACRERSTPGGRASTVSP 44
          GR RCPGRTRLLLTLEDH K+PGTRACRER T GGRAS   P
Sbjct: 19 GRCRCPGRTRLLLTLEDHRKKPGTRACRERRTRGGRASDQCP 60


>emb|CAG01450.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 891

 Score = 32.7 bits (73), Expect = 2.7
 Identities = 15/30 (50%), Positives = 18/30 (60%)

Query: 14  LLTLEDHWKRPGTRACRERSTPGGRASTVS 43
           ++TL  H+KRP    C E S PGG  S VS
Sbjct: 429 IVTLLKHYKRPDDSPCNEYSQPGGDGSYVS 458


>ref|XP_420362.1| PREDICTED: similar to Fragile X mental retardation 2 protein
           (Protein FMR-2) (FMR2P) (Ox19 protein) (Fragile X E
           mental retardation syndrome protein) [Gallus gallus]
          Length = 1590

 Score = 31.2 bits (69), Expect = 7.9
 Identities = 17/37 (45%), Positives = 19/37 (50%), Gaps = 1/37 (2%)

Query: 2   GGRSRCPGRTRLLLTLE-DHWKRPGTRACRERSTPGG 37
           G R RCP R+  LLT     W RP  R C  +S P G
Sbjct: 142 GRRGRCPPRSLGLLTAGCGWWDRPALRGCWRQSWPEG 178


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.318    0.135    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,286,359
Number of Sequences: 2540612
Number of extensions: 2921675
Number of successful extensions: 5685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5682
Number of HSP's gapped (non-prelim): 3
length of query: 47
length of database: 863,360,394
effective HSP length: 23
effective length of query: 24
effective length of database: 804,926,318
effective search space: 19318231632
effective search space used: 19318231632
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)