BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144406.4 - phase: 1 /pseudo
(322 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD83474.1| ribosomal protein S3 [Nicotiana tabacum] gi|5701... 498 e-140
emb|CAA47420.1| S3 [Petunia x hybrida] gi|418857|pir||S31847 rib... 494 e-138
emb|CAA48894.1| ribosomal protein S3 [Oenothera berteriana] gi|6... 489 e-137
gb|AAR91203.1| ribosomal protein S3 [Zea mays] gi|40795158|gb|AA... 481 e-134
pir||R3ZMS3 ribosomal protein S3 - maize mitochondrion gi|13921|... 479 e-134
emb|CAA69755.3| ribosomal protein S3 [Arabidopsis thaliana] gi|1... 477 e-133
dbj|BAC98918.1| ribosomal protein S3 [Brassica napus] 477 e-133
dbj|BAA12250.1| ribosomal protein S3 [Arabidopsis thaliana] 477 e-133
dbj|BAD66787.1| ribosomal protein S3 [Beta vulgaris subsp. vulga... 474 e-132
gb|AAN75744.1| ribosomal protein S3 [Helianthus annuus] 473 e-132
sp|Q95749|RT03_ARATH Mitochondrial ribosomal protein S3 473 e-132
dbj|BAA99471.1| ribosomal protein S3 [Beta vulgaris subsp. vulga... 468 e-130
emb|CAA45192.1| ribosomal protein S3 [Brassica napus] 462 e-129
pir||S36913 ribosomal protein S3 - rape mitochondrion 460 e-128
sp|P49386|RT03_BRANA Mitochondrial ribosomal protein S3 460 e-128
dbj|BAC19869.1| Ribosomal protein S3 [Oryza sativa (japonica cul... 452 e-126
gb|AAN75747.1| ribosomal protein S3 [Magnolia x soulangeana] 435 e-120
pir||T03213 probable ribosomal protein S3 - rice mitochondrion ... 426 e-118
gb|AAR01945.1| ribosomal protein S3 [Cycas revoluta] 358 2e-97
gb|AAC09417.1| rps3 [Marchantia polymorpha] gi|250821|gb|AAB2241... 132 2e-29
>dbj|BAD83474.1| ribosomal protein S3 [Nicotiana tabacum]
gi|57013937|ref|YP_173410.1| ribosomal protein S3
[Nicotiana tabacum]
Length = 563
Score = 498 bits (1283), Expect = e-140
Identities = 251/286 (87%), Positives = 257/286 (89%), Gaps = 5/286 (1%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI+IHFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SDYYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIIIHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RR+KSRP KEKGRW AFGKVGPIGCLHSS+ +EERNEVRGR AGKRVESIRLDDREKQN
Sbjct: 84 RREKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQN 143
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKKKQ YGYHDRSPSIKKNLSKSLRVSGA HPKYAG NDIAFLIEN DSFRKT
Sbjct: 144 EIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGIENDIAFLIENDDSFRKT 203
Query: 202 KFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVA 258
FK FFP RSD PT HL KRTLPAVRPSLNYSVMQY KN++HFDPVVVLNHFVA
Sbjct: 204 NLFKFFFPKKSRSDRPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKIHFDPVVVLNHFVA 263
Query: 259 PGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
PGVAEPSTMGG NAQGRSLDKRIRS IAFFVESSTSEKKCLAEAKK
Sbjct: 264 PGVAEPSTMGGANAQGRSLDKRIRSCIAFFVESSTSEKKCLAEAKK 309
>emb|CAA47420.1| S3 [Petunia x hybrida] gi|418857|pir||S31847 ribosomal protein S3 -
garden petunia mitochondrion
gi|417728|sp|Q04716|RT03_PETHY Mitochondrial ribosomal
protein S3
Length = 562
Score = 494 bits (1271), Expect = e-138
Identities = 247/284 (86%), Positives = 255/284 (88%), Gaps = 5/284 (1%)
Query: 26 YYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRR 85
YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLKRR
Sbjct: 25 YYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRR 84
Query: 86 DKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNEI 145
+KSRP KEKGRW AFGKVGPIGCLHSS+ +EERNEVRGR AGKRVESIRLDDREKQNEI
Sbjct: 85 EKSRPVKEKGRWGAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQNEI 144
Query: 146 RIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTKF 203
RIWPKKKQ YGYHDRSPSIKKNLSKSLRVSGA HPKYAG NDIAFLIEN DSFRKT
Sbjct: 145 RIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGIENDIAFLIENDDSFRKTNL 204
Query: 204 FKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAPG 260
FK FFP RSD PT HL KRTLPAVRPSLNYSVMQY KN++HFDPVVVLNHFVAPG
Sbjct: 205 FKFFFPKKSRSDRPTSHLLKRTLPAVRPSLNYSVMQYLLNTKNKIHFDPVVVLNHFVAPG 264
Query: 261 VAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
VAEPSTMGG NAQGRSLDKRI S IAFFVE+STSEKKCLAEAKK
Sbjct: 265 VAEPSTMGGANAQGRSLDKRIASCIAFFVENSTSEKKCLAEAKK 308
>emb|CAA48894.1| ribosomal protein S3 [Oenothera berteriana] gi|632234|pir||S43767
ribosomal protein S3 - evening primrose mitochondrion
gi|1173301|sp|P27754|RT03_OENBE Mitochondrial ribosomal
protein S3
Length = 550
Score = 489 bits (1260), Expect = e-137
Identities = 244/286 (85%), Positives = 253/286 (88%), Gaps = 5/286 (1%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SDYYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
R KSRPGKEK RWW FGKVGPIGCLHS++ +EERNEV GR AGKRVESIRLDDREKQN
Sbjct: 84 RGKKSRPGKEKARWWEFGKVGPIGCLHSNDDTEEERNEVGGRGAGKRVESIRLDDREKQN 143
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKKKQ YGYHDRSPSIKKNLSKSLRVSGA HPKYAG +NDIAFLIEN DSFRKT
Sbjct: 144 EIRIWPKKKQGYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGVLNDIAFLIENDDSFRKT 203
Query: 202 KFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVA 258
K FK FFP RSDGPT HL KRT PAVRPSLNYSVMQY+ KNQMHFDP+VVLNHFVA
Sbjct: 204 KLFKFFFPKKSRSDGPTSHLLKRTPPAVRPSLNYSVMQYYLNTKNQMHFDPLVVLNHFVA 263
Query: 259 PGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
PGVAEPSTMGG N QGRS + RIRSRIAFFVESSTSEKK LAE KK
Sbjct: 264 PGVAEPSTMGGANRQGRSNELRIRSRIAFFVESSTSEKKSLAEDKK 309
>gb|AAR91203.1| ribosomal protein S3 [Zea mays] gi|40795158|gb|AAR91202.1|
ribosomal protein S3 [Zea mays]
Length = 559
Score = 481 bits (1237), Expect = e-134
Identities = 244/287 (85%), Positives = 252/287 (87%), Gaps = 11/287 (3%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK +YQDVNLRSYF SIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRP RLK
Sbjct: 24 SDYYYGKSLYQDVNLRSYFSSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RRDKSRPGK+KGRWWAFGKVGPIGCLHSS +EERNEVRGR AGKRVESI DREKQN
Sbjct: 84 RRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQN 140
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKK QRYGYHDRSPS KKN SKSLRVSGA HPKYAG VNDIAFLIEN DSF KT
Sbjct: 141 EIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFIKT 200
Query: 202 KFFKLFF----PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
K FK FF RSDGPT HL KRTLPAVRPSLNYSVMQYFF KN+MHFDPVVVLNHFV
Sbjct: 201 KLFKFFFLPKKSRSDGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFV 260
Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
APGVAEPSTMGG A+G SLDKRIRSRIAFFVESSTS+KKCLA AKK
Sbjct: 261 APGVAEPSTMGG--AKGGSLDKRIRSRIAFFVESSTSDKKCLARAKK 305
>pir||R3ZMS3 ribosomal protein S3 - maize mitochondrion gi|13921|emb|CAA40690.1|
mitochondrial S3-like ribosomal protein [Zea mays]
gi|134045|sp|P27928|RT03_MAIZE Mitochondrial ribosomal
protein S3
Length = 559
Score = 479 bits (1234), Expect = e-134
Identities = 243/287 (84%), Positives = 252/287 (87%), Gaps = 11/287 (3%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK +YQDVNLRSYF SIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRP RLK
Sbjct: 24 SDYYYGKSLYQDVNLRSYFSSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RRDKSRPGK+KGRWWAFGKVGPIGCLHSS +EERNEVRGR AGKRVESI DREKQN
Sbjct: 84 RRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQN 140
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKK QRYGYHDR+PS KKN SKSLRVSGA HPKYAG VNDIAFLIEN DSF KT
Sbjct: 141 EIRIWPKKMQRYGYHDRTPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSFIKT 200
Query: 202 KFFKLFF----PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
K FK FF RSDGPT HL KRTLPAVRPSLNYSVMQYFF KN+MHFDPVVVLNHFV
Sbjct: 201 KLFKFFFLPKKSRSDGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFV 260
Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
APGVAEPSTMGG A+G SLDKRIRSRIAFFVESSTS+KKCLA AKK
Sbjct: 261 APGVAEPSTMGG--AKGGSLDKRIRSRIAFFVESSTSDKKCLARAKK 305
>emb|CAA69755.3| ribosomal protein S3 [Arabidopsis thaliana]
gi|13449298|ref|NP_085481.1| ribosomal protein S3
[Arabidopsis thaliana]
Length = 556
Score = 477 bits (1228), Expect = e-133
Identities = 241/286 (84%), Positives = 254/286 (88%), Gaps = 8/286 (2%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
RR+K+RPGKEKGRWW FGK GPI CLHSS+ +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84 RREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQ 143
Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
NEIR WPKKKQRYGYHDR PSIKKNLSKSLR+SGA HPKYAG VNDIAFLIEN DSF+K
Sbjct: 144 NEIRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKK 203
Query: 201 TKFFKLFF---PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
TK FKLFF RSDGPT +L RTLPAVRPSLN+ VMQYFF KNQ++FDPVVVLNHFV
Sbjct: 204 TKLFKLFFQNKSRSDGPTSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFV 261
Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
APG AEPSTMG NAQGRSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 262 APGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAK 307
>dbj|BAC98918.1| ribosomal protein S3 [Brassica napus]
Length = 553
Score = 477 bits (1227), Expect = e-133
Identities = 243/286 (84%), Positives = 252/286 (87%), Gaps = 10/286 (3%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCIL+HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
RR+K+RPGKEKGRWW FGK GPIGCL +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84 RREKTRPGKEKGRWWTTFGKAGPIGCLRDDT--EEERNEVRGRGARKRVESIRLDDRKKQ 141
Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
NEIR WPKKKQRYGYHDRSPSIKKNLSKSLR+SGA HPKYAG VNDIAFLIEN DSFRK
Sbjct: 142 NEIRGWPKKKQRYGYHDRSPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFRK 201
Query: 201 TKFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
TK FK FFP RSDGPT +L RTLPAVRPSLN+ VMQYFF KNQM+FDPVVVLNHFV
Sbjct: 202 TKLFKFFFPKKSRSDGPTSYL--RTLPAVRPSLNFLVMQYFFNTKNQMNFDPVVVLNHFV 259
Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
APG AEPSTMG NAQGRSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 260 APGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAK 305
>dbj|BAA12250.1| ribosomal protein S3 [Arabidopsis thaliana]
Length = 531
Score = 477 bits (1227), Expect = e-133
Identities = 240/284 (84%), Positives = 253/284 (88%), Gaps = 8/284 (2%)
Query: 26 YYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRR 85
YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLKRR
Sbjct: 1 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLKRR 60
Query: 86 DKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNE 144
+K+RPGKEKGRWW FGK GPI CLHSS+ +EERNEVRGR A KRVESIRLDDR+KQNE
Sbjct: 61 EKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQNE 120
Query: 145 IRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTK 202
IR WPKKKQRYGYHDR PSIKKNLSKSLR+SGA HPKYAG VNDIAFLIEN DSF+KTK
Sbjct: 121 IRGWPKKKQRYGYHDRLPSIKKNLSKSLRISGAFKHPKYAGVVNDIAFLIENDDSFKKTK 180
Query: 203 FFKLFF---PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAP 259
FKLFF RSDGPT +L RTLPAVRPSLN+ VMQYFF KNQ++FDPVVVLNHFVAP
Sbjct: 181 LFKLFFQNKSRSDGPTSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFVAP 238
Query: 260 GVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
G AEPSTMG NAQGRSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 239 GAAEPSTMGRANAQGRSLQKRIRSRIAFFVESSTSEKKCLAEAK 282
>dbj|BAD66787.1| ribosomal protein S3 [Beta vulgaris subsp. vulgaris]
gi|54606724|dbj|BAD66747.1| ribosomal protein S3 [Beta
vulgaris subsp. vulgaris]
Length = 551
Score = 474 bits (1219), Expect = e-132
Identities = 235/284 (82%), Positives = 248/284 (86%), Gaps = 5/284 (1%)
Query: 26 YYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRR 85
YYYGKLVYQD+NLRSYFGSIRPP RLTFGFRLGRCI+IHF KRTFI+FFLPRRP+R KRR
Sbjct: 26 YYYGKLVYQDINLRSYFGSIRPPTRLTFGFRLGRCIIIHFQKRTFINFFLPRRPQRRKRR 85
Query: 86 DKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNEI 145
KSRPGK KGRWW GKVGPI CL+SS + EERNEVR RRAGKRVESIRLDD++KQNEI
Sbjct: 86 KKSRPGKTKGRWWELGKVGPIECLYSSEGRKEERNEVRDRRAGKRVESIRLDDQKKQNEI 145
Query: 146 RIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTKF 203
R+WPKKKQRYGYHDRSPSIKKNLSKSLRVSGA HPKYA VNDIAFLIEN SF+KTK
Sbjct: 146 RVWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDSSFKKTKL 205
Query: 204 FKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAPG 260
FK FFP R DGPT HL KRTLPAVRPSLNYSVMQY K +MHFDPV+VLNHFVAPG
Sbjct: 206 FKFFFPKKSRYDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKKKMHFDPVLVLNHFVAPG 265
Query: 261 VAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
V EPSTM NAQG SLDKRIRSRIAFFVESSTS+KKCLAEAKK
Sbjct: 266 VVEPSTMNRANAQGGSLDKRIRSRIAFFVESSTSQKKCLAEAKK 309
>gb|AAN75744.1| ribosomal protein S3 [Helianthus annuus]
Length = 560
Score = 473 bits (1217), Expect = e-132
Identities = 241/290 (83%), Positives = 250/290 (86%), Gaps = 12/290 (4%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRR K
Sbjct: 24 SDYYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRQK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RR+KSRPGK KG+WWAFGKVGPIGCLHSS+ +EERNEVRGR AGKRVESIRLDDREKQN
Sbjct: 84 RREKSRPGKGKGQWWAFGKVGPIGCLHSSDGTEEERNEVRGRGAGKRVESIRLDDREKQN 143
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA HPKYAG VNDIA L N DSFRKT
Sbjct: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAGLVNDIALL--NDDSFRKT 201
Query: 202 KFFKLFFPR------SDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNH 255
K FK FF + SD PT H KRTLPAVRPSLNYSVMQY KNQMHFDPVVVLNH
Sbjct: 202 KLFKFFFSKKSKKSPSDSPTSHPLKRTLPAVRPSLNYSVMQYLLKTKNQMHFDPVVVLNH 261
Query: 256 FVAPGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKKV 305
FV PGV EPSTMGG +AQGRSLDKRI R AFFVESSTSEKK LAE KK+
Sbjct: 262 FVEPGVVEPSTMGGAHAQGRSLDKRI--RFAFFVESSTSEKKFLAEDKKL 309
>sp|Q95749|RT03_ARATH Mitochondrial ribosomal protein S3
Length = 556
Score = 473 bits (1216), Expect = e-132
Identities = 239/286 (83%), Positives = 252/286 (87%), Gaps = 8/286 (2%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
RR+K+RPGKEKGRWW FGK GPI CLHSS+ +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84 RREKTRPGKEKGRWWTTFGKAGPIECLHSSDDTEEERNEVRGRGARKRVESIRLDDRKKQ 143
Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
NEIR WPKKKQRYGYHDR PSIKKNLSK LR+SGA HPKYAG VNDIAFLIEN DSF+K
Sbjct: 144 NEIRGWPKKKQRYGYHDRLPSIKKNLSKLLRISGAFKHPKYAGVVNDIAFLIENDDSFKK 203
Query: 201 TKFFKLFF---PRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
TK FKLFF RSDGPT +L RTLPAVRPSLN+ VMQYFF KNQ++FDPVVVLNHFV
Sbjct: 204 TKLFKLFFQNKSRSDGPTSYL--RTLPAVRPSLNFLVMQYFFNTKNQINFDPVVVLNHFV 261
Query: 258 APGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
APG AEPSTMG NAQGRSL KRIRSRIAFFVES TSEKKCLAEAK
Sbjct: 262 APGAAEPSTMGRANAQGRSLQKRIRSRIAFFVESLTSEKKCLAEAK 307
>dbj|BAA99471.1| ribosomal protein S3 [Beta vulgaris subsp. vulgaris]
gi|9838465|ref|NP_064078.1| ribosomal protein S3 [Beta
vulgaris subsp. vulgaris]
Length = 551
Score = 468 bits (1203), Expect = e-130
Identities = 233/284 (82%), Positives = 246/284 (86%), Gaps = 5/284 (1%)
Query: 26 YYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRR 85
YYY KLVYQD+NLRSYFGSIRPP RLTFGFRLGRCI+IHF KRTFI+FFLPRRP+R KRR
Sbjct: 26 YYYSKLVYQDLNLRSYFGSIRPPTRLTFGFRLGRCIIIHFQKRTFINFFLPRRPQRRKRR 85
Query: 86 DKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNEI 145
KSRPGK KGRWW GKVGPI CL+SS + EERNEVR RRAGKRVESIRLDD++KQNEI
Sbjct: 86 KKSRPGKTKGRWWELGKVGPIECLYSSEGRKEERNEVRDRRAGKRVESIRLDDQKKQNEI 145
Query: 146 RIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTKF 203
R+WPKKKQRYGYHDRSPSIKKNLSKSLRVSGA HPKYA VNDIAFLIEN SF+KTK
Sbjct: 146 RVWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAFKHPKYAEVVNDIAFLIENDSSFKKTKL 205
Query: 204 FKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAPG 260
FK FFP R DGPT HL KRTLPAVRPSLNYSVMQY K +MH DPV+VLNHFVAPG
Sbjct: 206 FKFFFPKKSRYDGPTSHLLKRTLPAVRPSLNYSVMQYLLNTKKKMHSDPVLVLNHFVAPG 265
Query: 261 VAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
V EPSTM NAQG SLDKRIRSRIAFFVESSTS+KKCLAEAKK
Sbjct: 266 VVEPSTMNRANAQGGSLDKRIRSRIAFFVESSTSQKKCLAEAKK 309
>emb|CAA45192.1| ribosomal protein S3 [Brassica napus]
Length = 530
Score = 462 bits (1190), Expect = e-129
Identities = 237/285 (83%), Positives = 247/285 (86%), Gaps = 11/285 (3%)
Query: 26 YYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRR 85
YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCIL+HFPKRTFIHFFLPRRPRRLKRR
Sbjct: 1 YYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLKRR 60
Query: 86 DKSRPGKEKGRWW-AFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNE 144
+K+RPGKEKGRWW FGK GPIGCL +EERNEVRGR A KRVESIRLDDR+KQNE
Sbjct: 61 EKTRPGKEKGRWWTTFGKAGPIGCLRDDT--EEERNEVRGRGARKRVESIRLDDRKKQNE 118
Query: 145 IRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTK 202
IR WPKKKQRYGYHDR+PSIKKNLSKSLR+SGA HPKY G VNDIAFLIEN DSFRKTK
Sbjct: 119 IRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGVVNDIAFLIENDDSFRKTK 178
Query: 203 FFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAP 259
FK FFP RSDGPT +L RTLPAV PSLN+ VMQYFF KNQM+FDPVVVLNHFVAP
Sbjct: 179 LFKFFFPKKSRSDGPTSYL--RTLPAVGPSLNFLVMQYFFNTKNQMNFDPVVVLNHFVAP 236
Query: 260 GVAEPSTMGGTNAQG-RSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
G AEPSTMG N G RSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 237 GAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSEKKCLAEAK 281
>pir||S36913 ribosomal protein S3 - rape mitochondrion
Length = 555
Score = 460 bits (1183), Expect = e-128
Identities = 237/287 (82%), Positives = 247/287 (85%), Gaps = 11/287 (3%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCIL+HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SDYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAF-GKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
RR+K+RPGKEKGRWW GK GPIGCL +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84 RREKTRPGKEKGRWWTTPGKAGPIGCLRDDT--EEERNEVRGRGARKRVESIRLDDRKKQ 141
Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
NEIR WPKKKQRYGYHDR+PSIKKNLSKSLR+SGA HPKY G VNDIAFLIEN DSFRK
Sbjct: 142 NEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGVVNDIAFLIENDDSFRK 201
Query: 201 TKFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
TK FK FFP RSDGPT +L RTLPAV PSLN+ VMQYFF KNQM+FDPVVVLNHFV
Sbjct: 202 TKLFKFFFPKKSRSDGPTSYL--RTLPAVGPSLNFLVMQYFFNTKNQMNFDPVVVLNHFV 259
Query: 258 APGVAEPSTMGGTNAQG-RSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
APG AEPSTMG N G RSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 260 APGAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSEKKCLAEAK 306
>sp|P49386|RT03_BRANA Mitochondrial ribosomal protein S3
Length = 555
Score = 460 bits (1183), Expect = e-128
Identities = 237/287 (82%), Positives = 247/287 (85%), Gaps = 11/287 (3%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCIL+HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SEYYYGKFVYQDVNLRSYFGSIRPPTRLTFGFRLGRCILLHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAF-GKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQ 142
RR+K+RPGKEKGRWW GK GPIGCL +EERNEVRGR A KRVESIRLDDR+KQ
Sbjct: 84 RREKTRPGKEKGRWWTTPGKAGPIGCLRDDT--EEERNEVRGRGARKRVESIRLDDRKKQ 141
Query: 143 NEIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRK 200
NEIR WPKKKQRYGYHDR+PSIKKNLSKSLR+SGA HPKY G VNDIAFLIEN DSFRK
Sbjct: 142 NEIRGWPKKKQRYGYHDRTPSIKKNLSKSLRISGAFKHPKYGGVVNDIAFLIENDDSFRK 201
Query: 201 TKFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFV 257
TK FK FFP RSDGPT +L RTLPAV PSLN+ VMQYFF KNQM+FDPVVVLNHFV
Sbjct: 202 TKLFKFFFPKKSRSDGPTSYL--RTLPAVGPSLNFLVMQYFFNTKNQMNFDPVVVLNHFV 259
Query: 258 APGVAEPSTMGGTNAQG-RSLDKRIRSRIAFFVESSTSEKKCLAEAK 303
APG AEPSTMG N G RSL KRIRSRIAFFVESSTSEKKCLAEAK
Sbjct: 260 APGAAEPSTMGRANGTGDRSLQKRIRSRIAFFVESSTSEKKCLAEAK 306
>dbj|BAC19869.1| Ribosomal protein S3 [Oryza sativa (japonica cultivar-group)]
gi|769732|dbj|BAA04792.1| ribosomal protein S3 [Oryza
sativa (japonica cultivar-group)] gi|7440139|pir||T03232
probable ribosomal protein S3 - rice mitochondrion
gi|1173302|sp|P46773|RT03_ORYSA Mitochondrial ribosomal
protein S3
Length = 538
Score = 452 bits (1163), Expect = e-126
Identities = 232/283 (81%), Positives = 239/283 (83%), Gaps = 24/283 (8%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK +YQDVNLRSYF SIRPP LTFGFRLGRCI++HFPKRTFIHFFLPRRP RLK
Sbjct: 24 SDYYYGKSLYQDVNLRSYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RRDKSRPGK+KGRWWAFGKVGPIGCLHSS +EERNEVRGR AGKRVESI DREKQN
Sbjct: 84 RRDKSRPGKDKGRWWAFGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQN 140
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKK QRYGYHDRSPS KKN SKSLRVSGA HPKYAG VNDIAFLIEN
Sbjct: 141 EIRIWPKKMQRYGYHDRSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIEN------- 193
Query: 202 KFFKLFFPRSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAPGV 261
DGPT HL KRTLPAVRPSLNYSVMQYFF KN+MHFDPVVVLNHFVAPGV
Sbjct: 194 ----------DGPTSHLLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGV 243
Query: 262 AEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
AEPSTMGG A+G SLDKRIRSRIAFFVESSTSEKKCLA AKK
Sbjct: 244 AEPSTMGG--AKGGSLDKRIRSRIAFFVESSTSEKKCLARAKK 284
>gb|AAN75747.1| ribosomal protein S3 [Magnolia x soulangeana]
Length = 523
Score = 435 bits (1118), Expect = e-120
Identities = 227/286 (79%), Positives = 231/286 (80%), Gaps = 34/286 (11%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGK VYQDVNLRSYFGSIRPP RLTFGFRLGRCI++HFPKRTFIHFFLPRRPRRLK
Sbjct: 24 SDYYYGKSVYQDVNLRSYFGSIRPPTRLTFGFRLGRCIILHFPKRTFIHFFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
RRDKSRPG VRGR AGKRVESIRLDDREKQN
Sbjct: 84 RRDKSRPGN-----------------------------VRGRGAGKRVESIRLDDREKQN 114
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKT 201
EIRIWPKKKQRYGYHDRSPS KKNLSKSLRVSGA HPKYAG VNDIAFLIEN DS RKT
Sbjct: 115 EIRIWPKKKQRYGYHDRSPSRKKNLSKSLRVSGAFKHPKYAGVVNDIAFLIENDDSSRKT 174
Query: 202 KFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVA 258
K FK FFP RS GPT HL KRTLPAVRPSLNYSVMQY + KN+MHFDPVVVLNHFVA
Sbjct: 175 KLFKFFFPKKSRSGGPTSHLLKRTLPAVRPSLNYSVMQYLWNTKNKMHFDPVVVLNHFVA 234
Query: 259 PGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVESSTSEKKCLAEAKK 304
PGVAEPSTMGG N QG SLDKRIRSRI FFVESSTSEKKCLAEAKK
Sbjct: 235 PGVAEPSTMGGANEQGGSLDKRIRSRIGFFVESSTSEKKCLAEAKK 280
>pir||T03213 probable ribosomal protein S3 - rice mitochondrion (fragment)
gi|769730|dbj|BAA06834.1| ribosomal protein S3 [Oryza
sativa (japonica cultivar-group)]
Length = 499
Score = 426 bits (1094), Expect = e-118
Identities = 219/267 (82%), Positives = 225/267 (84%), Gaps = 24/267 (8%)
Query: 40 SYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLKRRDKSRPGKEKGRWWA 99
SYF SIRPP LTFGFRLGRCI++HFPKRTFIHFFLPRRP RLKRRDKSRPGK+KGRWWA
Sbjct: 1 SYFSSIRPPTILTFGFRLGRCIILHFPKRTFIHFFLPRRPLRLKRRDKSRPGKDKGRWWA 60
Query: 100 FGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQNEIRIWPKKKQRYGYHD 159
FGKVGPIGCLHSS +EERNEVRGR AGKRVESI DREKQNEIRIWPKK QRYGYHD
Sbjct: 61 FGKVGPIGCLHSSEGTEEERNEVRGRGAGKRVESI---DREKQNEIRIWPKKMQRYGYHD 117
Query: 160 RSPSIKKNLSKSLRVSGA--HPKYAGAVNDIAFLIENYDSFRKTKFFKLFFPRSDGPTGH 217
RSPS KKN SKSLRVSGA HPKYAG VNDIAFLIEN DGPT H
Sbjct: 118 RSPSRKKNFSKSLRVSGAFKHPKYAGVVNDIAFLIEN-----------------DGPTSH 160
Query: 218 LFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDPVVVLNHFVAPGVAEPSTMGGTNAQGRSL 277
L KRTLPAVRPSLNYSVMQYFF KN+MHFDPVVVLNHFVAPGVAEPSTMGG A+G SL
Sbjct: 161 LLKRTLPAVRPSLNYSVMQYFFNTKNKMHFDPVVVLNHFVAPGVAEPSTMGG--AKGGSL 218
Query: 278 DKRIRSRIAFFVESSTSEKKCLAEAKK 304
DKRIRSRIAFFVESSTSEKKCLA AKK
Sbjct: 219 DKRIRSRIAFFVESSTSEKKCLARAKK 245
>gb|AAR01945.1| ribosomal protein S3 [Cycas revoluta]
Length = 579
Score = 358 bits (918), Expect = 2e-97
Identities = 207/303 (68%), Positives = 226/303 (74%), Gaps = 30/303 (9%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGKLVYQDVNLR YFGSIRPP R TFGFRLGRCI+ HF KRTFIH FLPRRPRRLK
Sbjct: 24 SDYYYGKLVYQDVNLRDYFGSIRPPTRKTFGFRLGRCIIHHFTKRTFIHLFLPRRPRRLK 83
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRR--AGKRVESIRLDDR-- 139
RR KSRPG KGRWWAFGKV IG + +EERNEVRGRR AGK V+SIRLDDR
Sbjct: 84 RRGKSRPG--KGRWWAFGKVRSIG---PDDGTEEERNEVRGRRRGAGKTVKSIRLDDRTG 138
Query: 140 EKQNEIRIWPKKKQRYGYHDRSPSIKKNLSK--SLRVSGAHP---KYAGA----VNDIAF 190
E++NE+RIWP+KKQRYGYHDRSPS +KNLSK S ++ HP KYA VNDIAF
Sbjct: 139 EERNEVRIWPRKKQRYGYHDRSPSRQKNLSKWVSGWMAYKHPMSGKYAAKKRQYVNDIAF 198
Query: 191 LIENYD-SFRKTKFFKLFFP---RSDGPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMH 246
IE+ F KTKFFK FP RSDGPT +T+PAVRPS NY VMQYFF KNQ+H
Sbjct: 199 SIEDDTYVFGKTKFFKFLFPKKFRSDGPTSKRLLQTIPAVRPSFNYLVMQYFFHMKNQIH 258
Query: 247 FDP--VVVLNHFVAPGVAEPSTMGGTNAQGRSLDKRIRSRIAFFVES---STSEKKCLAE 301
FDP VVVLN+ VAPGVAEP GG + QG SLDKRIRSRI FFVES T + + LAE
Sbjct: 259 FDPIDVVVLNNLVAPGVAEP---GGADEQGGSLDKRIRSRIGFFVESLTAKTEQGEFLAE 315
Query: 302 AKK 304
AKK
Sbjct: 316 AKK 318
>gb|AAC09417.1| rps3 [Marchantia polymorpha] gi|250821|gb|AAB22413.1| ribosomal
protein S3 [Marchantia polymorpha=liverwort, Peptide
Mitochondrial, 430 aa] gi|282809|pir||S25977 ribosomal
protein S3 - liverwort (Marchantia polymorpha)
mitochondrion gi|11467119|ref|NP_054420.1| ribosomal
protein S3 [Marchantia polymorpha]
gi|585955|sp|P26865|RT03_MARPO Mitochondrial ribosomal
protein S3
Length = 430
Score = 132 bits (331), Expect = 2e-29
Identities = 105/259 (40%), Positives = 131/259 (50%), Gaps = 56/259 (21%)
Query: 24 SIYYYGKLVYQDVNLRSYFGSIRPPARLTFGFRLGRCILIHFPKRTFIHFFLPRRPRRLK 83
S YYYGKL+YQD+N R YFGSIRPP TFGFRLGRCI+ HFPKRTFIH F L
Sbjct: 24 SDYYYGKLLYQDLNFRDYFGSIRPPTGNTFGFRLGRCIIHHFPKRTFIHVFF------LD 77
Query: 84 RRDKSRPGKEKGRWWAFGKVGPIGCLHSSNKKDEERNEVRGRRAGKRVESIRLDDREKQN 143
R +SR +G +G + S K + I + +++N
Sbjct: 78 RLSQSR---HQG----------LGAIPSV----------------KLIRRINDNTVKQRN 108
Query: 144 EIRIWPKKKQRYGYHDRSPSIKKNLSKSLRVSGAHPKYAGAVNDIAFLIENYD--SFRKT 201
E+ IWPKK RY YHDR PSI+K + + LRVS I EN D + +
Sbjct: 109 EVGIWPKK--RYEYHDRLPSIQK-IDQLLRVSDWMADIHSTFQSIWPKDENDDRRASEER 165
Query: 202 KFFKLFFP------RSD------GPTGHLFKRTLPAVRPSLNYSVMQYFFCRKNQMHFDP 249
F F P R++ G G F T R L+Y VMQYFF KNQ+ FDP
Sbjct: 166 YAFSRFAPSILVAVRAEKKKAIFGSEGDFFGFT---GRAFLDYFVMQYFFNLKNQIQFDP 222
Query: 250 VVVLNHFVAPGVAEPSTMG 268
+V + VA GVA+ S +G
Sbjct: 223 MVNRSP-VAQGVAKTSMIG 240
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,812,401
Number of Sequences: 2540612
Number of extensions: 24800856
Number of successful extensions: 58518
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 58384
Number of HSP's gapped (non-prelim): 68
length of query: 322
length of database: 863,360,394
effective HSP length: 128
effective length of query: 194
effective length of database: 538,162,058
effective search space: 104403439252
effective search space used: 104403439252
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)
Medicago: description of AC144406.4