BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144375.7 - phase: 0
(123 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09581 probable high mobility group protein HMG1 - sword be... 128 3e-29
gb|AAY26151.1| high mobility group protein [Cucumis sativus] 125 3e-28
emb|CAA74401.1| HMG protein [Arabidopsis thaliana] gi|17104699|g... 123 1e-27
emb|CAA41200.1| HMG-1 like protein gene [Glycine max] gi|123379|... 121 4e-27
gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil] 120 6e-27
sp|P40620|HMGL_VICFA HMG1/2-like protein 120 8e-27
gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum] gi|744621... 120 8e-27
emb|CAA74402.1| HMG protein [Arabidopsis thaliana] gi|1694976|em... 119 2e-26
pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana g... 119 2e-26
gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis] 118 3e-26
sp|P40619|HMGL_IPONI HMG1/2-like protein 118 4e-26
emb|CAA74400.1| HMG protein [Arabidopsis thaliana] gi|21360557|g... 117 6e-26
emb|CAA54168.1| HMG 1 protein [Pisum sativum] gi|541968|pir||S40... 116 1e-25
emb|CAA05365.1| high mobility group protein [Solanum tuberosum] ... 114 4e-25
ref|NP_974413.1| high mobility group protein alpha (HMGalpha) / ... 114 4e-25
gb|AAM93217.1| nucleasome/chromatin assembly factor D protein NF... 110 1e-23
emb|CAA77641.1| high mobility group protein [Triticum aestivum] ... 108 2e-23
gb|AAL33650.1| HMG-like nucleosome/chromatin assembly factor D [... 108 2e-23
gb|AAP21609.1| HMGB1 [Oryza sativa (indica cultivar-group)] gi|2... 108 4e-23
dbj|BAD33893.1| putative HMGd1 [Oryza sativa (japonica cultivar-... 107 9e-23
>pir||T09581 probable high mobility group protein HMG1 - sword bean
gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 128 bits (322), Expect = 3e-29
Identities = 66/119 (55%), Positives = 86/119 (71%), Gaps = 13/119 (10%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKA DP+KPKRP S FF+FMS+FR +++KE+P NK V+VVGKA G+KW+S+SDAEK
Sbjct: 28 KKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKAGGDKWKSLSDAEKAPF 87
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
KKK EY K+I AYN+K+ GK S + KS SE+ND+D+D EEE++DDE
Sbjct: 88 VARAEKKKEEYDKSILAYNRKLEGKNPSEEEKSDKSKSEVNDEDED-----EEEDQDDE 141
>gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 125 bits (313), Expect = 3e-28
Identities = 60/117 (51%), Positives = 86/117 (73%), Gaps = 9/117 (7%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKRP S FF+FM +FR +++KE+P+NK V+ VGKA G+KW+SMSDAEK
Sbjct: 30 KAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYI 89
Query: 61 ----KKKMEYVKAIHAYNKKVA-GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K EY K++ AYNK++A G + + KS SE+NDDD+DDD++ E+E+++
Sbjct: 90 NKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 146
>emb|CAA74401.1| HMG protein [Arabidopsis thaliana] gi|17104699|gb|AAL34238.1|
unknown protein [Arabidopsis thaliana]
gi|13877971|gb|AAK44063.1| unknown protein [Arabidopsis
thaliana] gi|21536964|gb|AAM61305.1| unknown
[Arabidopsis thaliana] gi|26452113|dbj|BAC43146.1|
unknown protein [Arabidopsis thaliana]
gi|18394898|ref|NP_564123.1| high mobility group protein
beta1 (HMGbeta1) / HMG protein beta1 [Arabidopsis
thaliana] gi|11346368|pir||T51597 high mobility group
protein HMG-beta1 [validated] - Arabidopsis thaliana
Length = 144
Score = 123 bits (308), Expect = 1e-27
Identities = 64/117 (54%), Positives = 82/117 (69%), Gaps = 9/117 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
K A DP+KPKRP S FF+FM DFR F+KENP NK V+ VGKAAG+KW+S+SD+EK
Sbjct: 29 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 88
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K+EY K I AYNKK+ +S KS SE+ND+DD +D +EEEE++D
Sbjct: 89 VAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES-DKSVSEVNDEDDAEDGSEEEEDDD 144
>emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
gi|123379|sp|P26585|HMGL_SOYBN HMG1/2-like protein (SB11
protein)
Length = 152
Score = 121 bits (303), Expect = 4e-27
Identities = 63/117 (53%), Positives = 81/117 (68%), Gaps = 9/117 (7%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKRP S FF+FM +FR F KE+P+NK VS VGKAAG KW++MSDAEK
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYV 95
Query: 61 ----KKKMEYVKAIHAYNKKVA-GKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K+EY K + AYNKK A G + KS SE+ND+DDD++ + EEE++D
Sbjct: 96 AKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152
>gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 120 bits (302), Expect = 6e-27
Identities = 56/119 (47%), Positives = 87/119 (73%), Gaps = 9/119 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KK+ DP+KPKRP S FF+FM DFR +++++P+NK V+ VGKA G+KW+ ++DAEK
Sbjct: 27 KKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKQLTDAEKAPF 86
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
K+K EY K++ AYN+K AG+ + +S KS SE+NDD++D+D + E++++DD+
Sbjct: 87 IAKAEKRKQEYEKSMQAYNRKQAGEAADEEES-DKSRSEVNDDEEDEDGSAEDDDDDDD 144
>sp|P40620|HMGL_VICFA HMG1/2-like protein
Length = 149
Score = 120 bits (301), Expect = 8e-27
Identities = 57/118 (48%), Positives = 83/118 (70%), Gaps = 10/118 (8%)
Query: 2 ARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK- 60
A+ K DP+KPKRP S FF+FM+DFR +++K++P+NK V+ VGKA GE+W+S+S+ EK
Sbjct: 34 AKGKEPKDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKA 93
Query: 61 -------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
KKK EY + AYNKK+ GK G KS SE+ND+D+D++D E+E+++
Sbjct: 94 PYVDRALKKKEEYEITLQAYNKKLEGKDDEEGSD--KSKSEVNDEDEDEEDEEDEDDD 149
>gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum] gi|7446213|pir||T02252 high
mobility group protein HMG-1 - common tobacco
Length = 142
Score = 120 bits (301), Expect = 8e-27
Identities = 59/118 (50%), Positives = 80/118 (67%), Gaps = 10/118 (8%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKA DP+KPKRP S FF+FM +FR +++++P+NK V+ VGKA G+ W+ +S+AEK
Sbjct: 27 KKAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEAEKAPY 86
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDD 113
K+K EY K + AYN+K AG KS SE++DDDD+DDD EEEE+DD
Sbjct: 87 QAKAEKRKAEYQKNMDAYNRKQAGDAEEDESD--KSKSEVHDDDDEDDDGSEEEEDDD 142
>emb|CAA74402.1| HMG protein [Arabidopsis thaliana] gi|1694976|emb|CAA70691.1| HMG1
[Arabidopsis thaliana] gi|23198424|gb|AAN15739.1|
expressed protein [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein
[Arabidopsis thaliana] gi|21537072|gb|AAM61413.1|
unknown [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15
[Arabidopsis thaliana] gi|18394900|ref|NP_564124.1| high
mobility group protein beta2 (HMGbeta2) / HMG protein
beta2 [Arabidopsis thaliana] gi|15724174|gb|AAL06479.1|
At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|11346369|pir||T51598 high mobility group protein
HMG-beta2 [validated] - Arabidopsis thaliana
Length = 141
Score = 119 bits (298), Expect = 2e-26
Identities = 61/117 (52%), Positives = 82/117 (69%), Gaps = 9/117 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
K A DP+KPKRP S FF+FM DFRV +++E+P NK V+ VGKA GEKW+S+SD+EK
Sbjct: 26 KGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPY 85
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K+EY K + AYNKK+ +S KS SE+ND+DD +D +EEEE++D
Sbjct: 86 VAKADKRKVEYEKNMKAYNKKLEEGPKEDEES-DKSVSEVNDEDDAEDGSEEEEDDD 141
>pir||F86339 protein F2D10.18 [imported] - Arabidopsis thaliana
gi|8886929|gb|AAF80615.1| F2D10.18 [Arabidopsis
thaliana]
Length = 662
Score = 119 bits (298), Expect = 2e-26
Identities = 61/117 (52%), Positives = 82/117 (69%), Gaps = 9/117 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
K A DP+KPKRP S FF+FM DFRV +++E+P NK V+ VGKA GEKW+S+SD+EK
Sbjct: 547 KGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPY 606
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEED 112
K+K+EY K + AYNKK+ +S KS SE+ND+DD +D +EEEE++D
Sbjct: 607 VAKADKRKVEYEKNMKAYNKKLEEGPKEDEES-DKSVSEVNDEDDAEDGSEEEEDDD 662
Score = 116 bits (291), Expect = 1e-25
Identities = 62/115 (53%), Positives = 78/115 (66%), Gaps = 9/115 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
K A DP+KPKRP S FF+FM DFR F+KENP NK V+ VGKAAG+KW+S+SD+EK
Sbjct: 406 KAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPY 465
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEE 110
K+K+EY K I AYNKK+ +S KS SE+ND+DD +D +EE E
Sbjct: 466 VAKAEKRKVEYEKNIKAYNKKLEEGPKEDEES-DKSVSEVNDEDDAEDGSEEVSE 519
>gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 118 bits (296), Expect = 3e-26
Identities = 62/126 (49%), Positives = 87/126 (68%), Gaps = 14/126 (11%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+ KA DP+KPKRP S FF+FM DFR +F+++NP+NK VSVVGKA KW++MS AEK
Sbjct: 33 KSKAVKDPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAAEKAP 92
Query: 61 ------KKKMEYVKAIHAYNKKVA---GKKSS---SGKSFVKSNSELNDDDDDDDDNEEE 108
K+K +Y K + AYNKK + GKKS+ + KS SE++DD+DDD+ +++
Sbjct: 93 FEARAAKRKADYNKVMVAYNKKQSEGGGKKSAEEEDDEESDKSKSEVHDDEDDDESGDDD 152
Query: 109 EEEDDE 114
+E+DDE
Sbjct: 153 DEDDDE 158
>sp|P40619|HMGL_IPONI HMG1/2-like protein
Length = 144
Score = 118 bits (295), Expect = 4e-26
Identities = 59/119 (49%), Positives = 82/119 (68%), Gaps = 9/119 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKA DP+KPKRP S FF+FM DFR +++++P+NK V+VVGKA G+KW+ ++ AEK
Sbjct: 27 KKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPF 86
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDDE 114
K+K EY K + AYNKK A + +S KS SE+NDDD+D D + E++ EDD+
Sbjct: 87 ISKAEKRKQEYEKNLQAYNKKQAAGAAEEEES-DKSRSEVNDDDEDQDGSGEDDSEDDD 144
>emb|CAA74400.1| HMG protein [Arabidopsis thaliana] gi|21360557|gb|AAM47475.1|
At3g51880/ORF13 [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis
thaliana] gi|15231065|ref|NP_190756.1| high mobility
group protein alpha (HMGalpha) / HMG protein alpha
[Arabidopsis thaliana] gi|11346370|pir||T51159 HMG
protein [imported] - Arabidopsis thaliana
Length = 178
Score = 117 bits (293), Expect = 6e-26
Identities = 66/131 (50%), Positives = 80/131 (60%), Gaps = 24/131 (18%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKAK DP+KPKR S FF+F+ DFRV F+KENP+ K VS VGKA G+KW+SMS AEK
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDD------------D 103
K+K EY K + AYNK + S KS SE+ND+D+ D
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKNLEEGSDES----EKSRSEINDEDEASGEEELLEKEAAGD 159
Query: 104 DNEEEEEEDDE 114
D EEEEEEDD+
Sbjct: 160 DEEEEEEEDDD 170
>emb|CAA54168.1| HMG 1 protein [Pisum sativum] gi|541968|pir||S40122 high mobility
group protein HMG-1 - garden pea
Length = 154
Score = 116 bits (291), Expect = 1e-25
Identities = 60/121 (49%), Positives = 79/121 (64%), Gaps = 8/121 (6%)
Query: 2 ARKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK- 60
A+ K DP+KPKRP S FF+FM DFR +F+K N DNK VS VGKAAG KW+SM++AEK
Sbjct: 34 AKGKEPKDPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEAEKA 93
Query: 61 -------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEEDD 113
K+K EY K++ +YNKK A ++ + SE D++DD+ E EEE+DD
Sbjct: 94 PYAAKAEKRKAEYEKSMKSYNKKQAEGPAAVEEEEESEKSESEVHDENDDEEESEEEDDD 153
Query: 114 E 114
E
Sbjct: 154 E 154
>emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
gi|7446212|pir||T07377 high mobility group protein -
potato
Length = 141
Score = 114 bits (286), Expect = 4e-25
Identities = 56/116 (48%), Positives = 82/116 (70%), Gaps = 9/116 (7%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
K A DP+KPKRP S FF+FM +FR +++++P+NK V+VVGKA G+KW+ +SD EK
Sbjct: 27 KNAAKDPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPY 86
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDDNEEEEEE 111
K+K EY K + AYNKK+A + +S KS SE++DDD+DDD +E+E+++
Sbjct: 87 QAKAEKRKAEYQKNMDAYNKKLAAGDADDEES-DKSKSEVHDDDEDDDGSEQEDDD 141
>ref|NP_974413.1| high mobility group protein alpha (HMGalpha) / HMG protein alpha
[Arabidopsis thaliana]
Length = 185
Score = 114 bits (286), Expect = 4e-25
Identities = 66/138 (47%), Positives = 80/138 (57%), Gaps = 31/138 (22%)
Query: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK--- 60
KKAK DP+KPKR S FF+F+ DFRV F+KENP+ K VS VGKA G+KW+SMS AEK
Sbjct: 44 KKAKKDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPY 103
Query: 61 -----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDD------------- 102
K+K EY K + AYNK + S KS SE+ND+D+
Sbjct: 104 EEKAAKRKAEYEKQMDAYNKNLEEGSDES----EKSRSEINDEDEASGEVTIPLSNEELL 159
Query: 103 ------DDNEEEEEEDDE 114
DD EEEEEEDD+
Sbjct: 160 EKEAAGDDEEEEEEEDDD 177
>gb|AAM93217.1| nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|7446228|pir||T03375 high mobility group protein HMGd1
- maize
Length = 126
Score = 110 bits (274), Expect = 1e-23
Identities = 55/110 (50%), Positives = 78/110 (70%), Gaps = 9/110 (8%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+ KA+ DP+KPKRP S FF+FM +FR +++++P+ K VSV+GKA G+KW+S+SDAEK
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDKWKSLSDAEKAP 77
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDD 104
K K EY K I AYN K +G ++SG S KS SE+ND+D++ D+
Sbjct: 78 YVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDS-DKSKSEVNDEDEEGDE 126
>emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|729738|sp|P40621|HMGL_WHEAT HMG1/2-like protein
Length = 161
Score = 108 bits (271), Expect = 2e-23
Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 18/128 (14%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKR S FF+FM +FR F+++NP NK V+ VGKAAGE+W+S+S++EK
Sbjct: 34 KAGKDPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYV 93
Query: 61 ----KKKMEYVKAIHAYNK----KVAGKKSSSGKSFVKSNSELND------DDDDDDDNE 106
K K EY KAI AYNK A K ++ K + + E +D +DDDDD+
Sbjct: 94 AKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDEGS 153
Query: 107 EEEEEDDE 114
+E+E+DDE
Sbjct: 154 DEDEDDDE 161
>gb|AAL33650.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 108 bits (271), Expect = 2e-23
Identities = 54/110 (49%), Positives = 78/110 (70%), Gaps = 9/110 (8%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+ KA+ DP+KPKRP S FF+FM +FR +++++P+ K VS++GKA G+KW+S+SDAEK
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSLIGKAGGDKWKSLSDAEKAP 77
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDD 104
K K EY K I AYN K +G ++SG S KS SE+ND+D++ D+
Sbjct: 78 YVSKAEKLKAEYTKKIDAYNNKQSGDPTASGDS-DKSKSEVNDEDEEGDE 126
>gb|AAP21609.1| HMGB1 [Oryza sativa (indica cultivar-group)]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa
(indica cultivar-group)] gi|3885888|gb|AAC78104.1| high
mobility group protein [Oryza sativa]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa
(japonica cultivar-group)]
Length = 157
Score = 108 bits (269), Expect = 4e-23
Identities = 56/124 (45%), Positives = 80/124 (64%), Gaps = 14/124 (11%)
Query: 5 KAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK---- 60
KA DP+KPKR S FF+FM +FR F+++NP NK V+ VGKAAG++W+S+++A+K
Sbjct: 34 KAGKDPNKPKRAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEADKAPYV 93
Query: 61 ----KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELND------DDDDDDDNEEEEE 110
K K EY KAI AYNK + K + K + + E +D +D+DDD+ EE+E
Sbjct: 94 AKANKLKAEYNKAIAAYNKGESTAKKAPAKEEEEDDEEESDKSKSEVNDEDDDEGSEEDE 153
Query: 111 EDDE 114
+DDE
Sbjct: 154 DDDE 157
>dbj|BAD33893.1| putative HMGd1 [Oryza sativa (japonica cultivar-group)]
Length = 127
Score = 107 bits (266), Expect = 9e-23
Identities = 55/110 (50%), Positives = 75/110 (68%), Gaps = 9/110 (8%)
Query: 3 RKKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMSDAEK-- 60
+ KA+ DP+KPKRP S FF+FM FR +++++P+ K VSV+GKA G+KW+SM+DA+K
Sbjct: 18 KTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKAGGDKWKSMTDADKAP 77
Query: 61 ------KKKMEYVKAIHAYNKKVAGKKSSSGKSFVKSNSELNDDDDDDDD 104
K K EY K I AYN K AG ++SG S KS SE+ND+D+ D
Sbjct: 78 FVTKAEKLKAEYTKKIDAYNNKQAGGPATSGDS-DKSKSEVNDEDEGSGD 126
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.310 0.128 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 228,101,912
Number of Sequences: 2540612
Number of extensions: 9777258
Number of successful extensions: 367601
Number of sequences better than 10.0: 6996
Number of HSP's better than 10.0 without gapping: 4636
Number of HSP's successfully gapped in prelim test: 2474
Number of HSP's that attempted gapping in prelim test: 254156
Number of HSP's gapped (non-prelim): 47998
length of query: 123
length of database: 863,360,394
effective HSP length: 99
effective length of query: 24
effective length of database: 611,839,806
effective search space: 14684155344
effective search space used: 14684155344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC144375.7