BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144345.7 - phase: 0 /pseudo
(366 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 135 2e-30
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 129 1e-28
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 129 1e-28
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 126 9e-28
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 125 3e-27
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 125 3e-27
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 124 5e-27
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 124 6e-27
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 123 1e-26
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 122 2e-26
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 122 2e-26
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 122 2e-26
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 121 3e-26
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 121 3e-26
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 121 4e-26
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 119 1e-25
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 118 2e-25
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 118 3e-25
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 117 4e-25
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 117 4e-25
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 135 bits (340), Expect = 2e-30
Identities = 69/190 (36%), Positives = 103/190 (53%), Gaps = 9/190 (4%)
Query: 13 WYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNA 72
W ++++ +L W+ R S+GGRLILL LSS+P+Y +SF++ P G+ ++
Sbjct: 571 WKLAENKMEHKLGCWQGRLQSIGGRLILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKR 630
Query: 73 FFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRV 132
F W + IRK + W VCS + +GGLGV L N A+LGKW WR+ E G W +
Sbjct: 631 FLWQEDQGIRKYHLVNWPLVCSPRDQGGLGVLDLEAMNKAMLGKWIWRLENEEG-WWQEI 689
Query: 133 LCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWV 192
+ A+Y + + G S +WQ +++V+D ++ VGNG TLFW
Sbjct: 690 IYAKYCSDKPLSGLRLKAGSSHFWQGVMEVKDD--------FFSFCTKIVGNGEKTLFWE 741
Query: 193 DPWLEEKPLS 202
D WL KPL+
Sbjct: 742 DSWLGGKPLA 751
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 129 bits (325), Expect = 1e-28
Identities = 70/190 (36%), Positives = 104/190 (53%), Gaps = 8/190 (4%)
Query: 9 KLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLES 68
K+ + L DR+K +L W +R LS GG+ +LLK V ++PV+ +S FK P LES
Sbjct: 727 KVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLES 786
Query: 69 LFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTL 128
+F+W C+ RKI W WE +C K GGLG R ++ FN ALL K WR+L L
Sbjct: 787 AMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCL 846
Query: 129 WYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLST 188
R+L +RY + L + S W++IL R+ + + + +RVG+G S
Sbjct: 847 LSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSK--------GLQKRVGDGASL 898
Query: 189 LFWVDPWLEE 198
W+DPW+++
Sbjct: 899 FVWIDPWIDD 908
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 129 bits (325), Expect = 1e-28
Identities = 70/190 (36%), Positives = 104/190 (53%), Gaps = 8/190 (4%)
Query: 9 KLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLES 68
K+ + L DR+K +L W +R LS GG+ +LLK V ++PV+ +S FK P LES
Sbjct: 724 KVDMLHYLKDRLKEKLDVWFTRCLSQGGKEVLLKSVALAMPVFAMSCFKLPITTCENLES 783
Query: 69 LFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTL 128
+F+W C+ RKI W WE +C K GGLG R ++ FN ALL K WR+L L
Sbjct: 784 AMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCL 843
Query: 129 WYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLST 188
R+L +RY + L + S W++IL R+ + + + +RVG+G S
Sbjct: 844 LSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSK--------GLQKRVGDGASL 895
Query: 189 LFWVDPWLEE 198
W+DPW+++
Sbjct: 896 FVWIDPWIDD 905
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 126 bits (317), Expect = 9e-28
Identities = 68/188 (36%), Positives = 107/188 (56%), Gaps = 9/188 (4%)
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFW 75
+++R RL+ W+ R LS+ GRL L K VL+S+PV+ ++ P + L+ L +F W
Sbjct: 16 VLERASSRLAGWRGRFLSLAGRLTLTKAVLASLPVHTMTTIVLPKSTLDKLDQLSRSFLW 75
Query: 76 GGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCA 135
G + RK+ I W+ VC K EGGLG+R R NLALL K WR++++R +LW RVL +
Sbjct: 76 GSTPEKRKLHLIAWDRVCLPKAEGGLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRS 135
Query: 136 RYGEEGGR--LCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVD 193
+Y G R + + S W++I + G+ ++ ++ ++ VG+G FW D
Sbjct: 136 KYRIGGLRDTTWINTKRNASSTWRSI---KSGLREV----VIPGMNWVVGDGKDICFWDD 188
Query: 194 PWLEEKPL 201
WL E P+
Sbjct: 189 KWLVEDPI 196
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 125 bits (313), Expect = 3e-27
Identities = 65/192 (33%), Positives = 105/192 (53%), Gaps = 12/192 (6%)
Query: 18 DRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGG 77
++++ RL+ W ++ LS GG+ +LLK + ++PVY +S FK P + L ++ F+W
Sbjct: 748 EKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS 807
Query: 78 CEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY 137
+ RKI W+ W+ + K +GG G + L+ FN ALL K WR+LQE+G+L+ RV +RY
Sbjct: 808 MQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY 867
Query: 138 GEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLE 197
L + S W++IL R+ ++ + +GNG T W D WL
Sbjct: 868 FSNSDFLSATRGSRPSYAWRSILFGRE--------LLMQGLRTVIGNGQKTFVWTDKWLH 919
Query: 198 E----KPLS*RR 205
+ +PL+ RR
Sbjct: 920 DGSNRRPLNRRR 931
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 125 bits (313), Expect = 3e-27
Identities = 65/192 (33%), Positives = 105/192 (53%), Gaps = 12/192 (6%)
Query: 18 DRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGG 77
++++ RL+ W ++ LS GG+ +LLK + ++PVY +S FK P + L ++ F+W
Sbjct: 769 EKLQSRLTGWYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNS 828
Query: 78 CEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY 137
+ RKI W+ W+ + K +GG G + L+ FN ALL K WR+LQE+G+L+ RV +RY
Sbjct: 829 MQQKRKIHWLSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY 888
Query: 138 GEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLE 197
L + S W++IL R+ ++ + +GNG T W D WL
Sbjct: 889 FSNSDFLSATRGSRPSYAWRSILFGRE--------LLMQGLRTVIGNGQKTFVWTDKWLH 940
Query: 198 E----KPLS*RR 205
+ +PL+ RR
Sbjct: 941 DGSNRRPLNRRR 952
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 124 bits (311), Expect = 5e-27
Identities = 70/183 (38%), Positives = 99/183 (53%), Gaps = 8/183 (4%)
Query: 19 RIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGGC 78
R+K +LS W S++LS GG+ I+LK V ++PV+ +S FK P + L S F+W
Sbjct: 619 RLKSKLSSWFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSAN 678
Query: 79 EDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARYG 138
+ RKI W+ WE +C K GGLG R + FN ALL K WR+LQ L+ R++ +RY
Sbjct: 679 DHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYF 738
Query: 139 EEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLEE 198
G L S W++IL RD + + +RVGNG S W+D WL++
Sbjct: 739 PVGEFLDSDVGSRPSFGWRSILHGRD--------LLCRGLVKRVGNGKSIRVWIDYWLDD 790
Query: 199 KPL 201
L
Sbjct: 791 NGL 793
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 124 bits (310), Expect = 6e-27
Identities = 71/199 (35%), Positives = 108/199 (53%), Gaps = 14/199 (7%)
Query: 18 DRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGG 77
++I++RL+ WK LS GG+ IL+ LSSIP+Y + + P G+ + ++S+ FFW G
Sbjct: 307 NKIEKRLATWKCGYLSYGGKAILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEG 366
Query: 78 CEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY 137
E RK IKWE +C K GGLG R+ N+ALL KW +R+ + +L +Y
Sbjct: 367 LEKKRKYHMIKWEALCRPKEFGGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKY 426
Query: 138 GEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWLE 197
++GG S + S +W+ + +V+ WM S +VGNG +T FW D W+
Sbjct: 427 MKDGGGFFQSKAEESSQFWKGLHEVKK--------WMDLGSSYKVGNGKATNFWSDVWIG 478
Query: 198 EKPLS*RRINYTRWPSCLR 216
E PL T++P+ R
Sbjct: 479 ETPLK------TQYPNIYR 491
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 123 bits (308), Expect = 1e-26
Identities = 65/186 (34%), Positives = 103/186 (54%), Gaps = 5/186 (2%)
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFW 75
+++R+ RL+ WK R+LS+ GR+ L K VLSSIPV+ +S P + TL+ F W
Sbjct: 631 VLERVSARLAGWKGRSLSLAGRITLTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLW 690
Query: 76 GGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCA 135
G + +K + W +C K EGG+G+R R+ N AL+ K WR+LQ++ +LW RV+
Sbjct: 691 GSTMEKKKQHLLSWRKICKPKAEGGIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRK 750
Query: 136 RYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPW 195
+Y + GG S W T V G+ ++ ++ + G+G + FW+D W
Sbjct: 751 KY-KVGGVQDTSWLKPQPRWSSTWRSVAVGLREV----VVKGVGWVPGDGCTIRFWLDRW 805
Query: 196 LEEKPL 201
L ++PL
Sbjct: 806 LLQEPL 811
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 122 bits (306), Expect = 2e-26
Identities = 68/189 (35%), Positives = 100/189 (51%), Gaps = 9/189 (4%)
Query: 13 WYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNA 72
W + D +R+LS WK +N S GGRL+LL VLSS+P++ L FF+ P G++ L+ ++
Sbjct: 66 WKCVEDMFQRKLSTWKGKNNSYGGRLVLLNSVLSSLPMFMLLFFEIPRGVLQRLDYYRSS 125
Query: 73 FFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRV 132
FFW +K KW+ + K +GGLGV L N LL KW +++L G LW +
Sbjct: 126 FFWSSDSQKKKYRLTKWDYIYRLKDQGGLGVLNLDIMNRCLLSKWLFKLLNGEG-LWQNL 184
Query: 133 LCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWV 192
L +Y + S + G S +W ++ V+D Q S + GNG+ FW
Sbjct: 185 LRNKYLKGKPLSHMSHKPGTSQFWAGLMKVKDQFFQYG--------SFKPGNGMEIRFWE 236
Query: 193 DPWLEEKPL 201
D WL +PL
Sbjct: 237 DTWLGLQPL 245
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 122 bits (305), Expect = 2e-26
Identities = 65/189 (34%), Positives = 96/189 (50%), Gaps = 8/189 (4%)
Query: 8 RKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLE 67
+K + +VDRI++R W SR LS G+ +LK VL+S+P Y +S FK + ++
Sbjct: 586 KKRDLFNQIVDRIRQRSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCFKLLVSLCKRIQ 645
Query: 68 SLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGT 127
S F+W D +K+ WI W + K EGGLG + + FN ALL K WRI+Q
Sbjct: 646 SALTHFWWDSSADKKKMCWIAWSKMAKNKKEGGLGFKDITNFNDALLAKLSWRIVQSPSC 705
Query: 128 LWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLS 187
+ R+L +Y L CS S W+ I +D + + + +G+GL
Sbjct: 706 VLVRILLGKYCRTSSFLDCSVTAASSHGWRGICTGKD--------LIKSQLGKVIGSGLD 757
Query: 188 TLFWVDPWL 196
TL W +PWL
Sbjct: 758 TLVWNEPWL 766
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 122 bits (305), Expect = 2e-26
Identities = 67/196 (34%), Positives = 102/196 (51%), Gaps = 23/196 (11%)
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFW 75
+++++ RL+ WK R LS+ GR+ L K VLSSIPV+ +S P + L+ + +F W
Sbjct: 293 ILEKLTTRLAGWKGRFLSLAGRVTLTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLW 352
Query: 76 GGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCA 135
G RK I W+ VC + EGGLG+R+ ++ N ALL K WR++Q+ +LW R++
Sbjct: 353 GSSVTQRKQHLISWKRVCKPRSEGGLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRC 412
Query: 136 RYGEEGGRLCCSCRDG---------GSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGL 186
Y + RDG S W L +R+ V + +S +G+G
Sbjct: 413 NYRVQ------DVRDGAWTKVRSVCSSTWRSVALGMREVV--------IPGLSWVIGDGR 458
Query: 187 STLFWVDPWLEEKPLS 202
LFW+D WL PL+
Sbjct: 459 EILFWMDKWLTNIPLA 474
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 121 bits (304), Expect = 3e-26
Identities = 72/196 (36%), Positives = 108/196 (54%), Gaps = 9/196 (4%)
Query: 5 GDPRKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIIS 64
G +K F Y ++DR+K+R S W +R LS G+ I+LK V ++PVY +S FK P GI+S
Sbjct: 1140 GRKKKEMFEY-IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVS 1198
Query: 65 TLESLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQE 124
+ESL F+W + R I W+ W+ + K EGGLG R L +FN ALL K WR++Q
Sbjct: 1199 EIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQY 1258
Query: 125 RGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGN 184
+L+ RV+ ARY ++ L R S W ++L DG+ + G +G+
Sbjct: 1259 PNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLL---DGIALLKKG-----TRHLIGD 1310
Query: 185 GLSTLFWVDPWLEEKP 200
G + +D ++ P
Sbjct: 1311 GQNIRIGLDNIVDSHP 1326
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 121 bits (304), Expect = 3e-26
Identities = 72/196 (36%), Positives = 108/196 (54%), Gaps = 9/196 (4%)
Query: 5 GDPRKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIIS 64
G +K F Y ++DR+K+R S W +R LS G+ I+LK V ++PVY +S FK P GI+S
Sbjct: 914 GRKKKEMFEY-IIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFKLPKGIVS 972
Query: 65 TLESLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQE 124
+ESL F+W + R I W+ W+ + K EGGLG R L +FN ALL K WR++Q
Sbjct: 973 EIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRLIQY 1032
Query: 125 RGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGN 184
+L+ RV+ ARY ++ L R S W ++L DG+ + G +G+
Sbjct: 1033 PNSLFARVMKARYFKDVSILDAKVRKQQSYGWASLL---DGIALLKKG-----TRHLIGD 1084
Query: 185 GLSTLFWVDPWLEEKP 200
G + +D ++ P
Sbjct: 1085 GQNIRIGLDNIVDSHP 1100
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 121 bits (303), Expect = 4e-26
Identities = 65/195 (33%), Positives = 103/195 (52%), Gaps = 9/195 (4%)
Query: 8 RKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLE 67
RK + ++D+I+++ W SR LS G+ ++LK VL+S+P+Y +S FK PS + ++
Sbjct: 655 RKRDIFGAIIDKIRQKSHSWASRFLSQAGKQVMLKAVLASMPLYSMSCFKLPSALCRKIQ 714
Query: 68 SLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGT 127
SL F+W D+RK +W+ W + + K GGLG R + N +LL K WR+L +
Sbjct: 715 SLLTRFWWDTKPDVRKTSWVAWSKLTNPKNAGGLGFRDIERCNDSLLAKLGWRLLNSPES 774
Query: 128 LWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLS 187
L R+L +Y + C S W++I+ R+ + + GW+ + NG
Sbjct: 775 LLSRILLGKYCHSSSFMECKLPSQPSHGWRSIIAGRE-ILKEGLGWL-------ITNGEK 826
Query: 188 TLFWVDPWLE-EKPL 201
W DPWL KPL
Sbjct: 827 VSIWNDPWLSISKPL 841
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
Length = 1333
Score = 119 bits (298), Expect = 1e-25
Identities = 67/179 (37%), Positives = 93/179 (51%), Gaps = 8/179 (4%)
Query: 18 DRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFWGG 77
DR+K RLS W +R LSMGG+ LLK ++ Y +S FK + S + F+W
Sbjct: 772 DRLKTRLSGWFARTLSMGGKETLLKAFALALLFYAMSCFKLTKTTCVNMTSAMSDFWWNA 831
Query: 78 CEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCARY 137
E RK W+ E +C K GGLG R + FN ALL K WR+LQ +L+ R +RY
Sbjct: 832 LEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLLQFPNSLFARFFKSRY 891
Query: 138 GEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPWL 196
+E L + S W++IL RD ++ ++VGNG ST W+DPW+
Sbjct: 892 YDEEDFLDAELKATPSYAWRSILHGRD--------LLIKGFRKKVGNGSSTSVWMDPWI 942
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 118 bits (296), Expect = 2e-25
Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 5 GDPRKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIIS 64
G +K F Y ++DR+K R + W ++ LS G+ ILLK V ++PVY +S FK P GI+S
Sbjct: 379 GRKKKEMFNY-IIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFKLPQGIVS 437
Query: 65 TLESLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQE 124
+ESL F+W + R I W+ W+ + K EGGLG R L +FN ALL K WRI+Q
Sbjct: 438 EIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKEGGLGFRDLAKFNDALLAKQAWRIIQY 497
Query: 125 RGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTIL 160
+L+ RV+ ARY ++ + R S W ++L
Sbjct: 498 PNSLFARVMKARYFKDNSIIDAKTRSQQSYGWSSLL 533
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 118 bits (295), Expect = 3e-25
Identities = 69/196 (35%), Positives = 97/196 (49%), Gaps = 8/196 (4%)
Query: 1 LPIGGDPRKLAFWYPLVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPS 60
LP G + L +RI +++ W LS GG+ +L+K V+ +IPVY + FK P
Sbjct: 1122 LPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQAIPVYVMGIFKLPE 1181
Query: 61 GIISTLESLFNAFFWGGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWR 120
+ L SL F+WG + RK W W+++ K GGLG + +R FN ALL + WR
Sbjct: 1182 SVCEDLTSLTRNFWWGAEKGKRKTHWKAWKSLTKSKSLGGLGFKDIRLFNQALLARQAWR 1241
Query: 121 ILQERGTLWYRVLCARYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISR 180
++ +L RVL A+Y G + S S WQ I G+ + G I
Sbjct: 1242 LIDNPDSLCARVLKAKYYPNGSIVDTSFGGNASPGWQAI---EHGLELVKKG-----IIW 1293
Query: 181 RVGNGLSTLFWVDPWL 196
R+GNG S W DPWL
Sbjct: 1294 RIGNGRSVRVWQDPWL 1309
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 117 bits (294), Expect = 4e-25
Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 12/204 (5%)
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFW 75
L +R+ +R+ W + LS GG+ IL+K VL ++PVY + FK P + L L F+W
Sbjct: 1381 LQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWW 1440
Query: 76 GGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCA 135
G + +R+ W W+ + ++K +GG+G R R FN ALL + WR+L +L R+L A
Sbjct: 1441 GAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKA 1500
Query: 136 RYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPW 195
Y G + S S W+ I G+ + G I R+GNG S W DPW
Sbjct: 1501 IYYPNGSLIDTSFGGNASPGWRAI---EYGLELLKKG-----IIWRIGNGKSVRLWRDPW 1552
Query: 196 L----EEKPLS*RRINYTRWPSCL 215
+ +P+S +R RW S L
Sbjct: 1553 IPRSYSRRPISAKRNCRLRWVSDL 1576
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 117 bits (294), Expect = 4e-25
Identities = 70/204 (34%), Positives = 104/204 (50%), Gaps = 12/204 (5%)
Query: 16 LVDRIKRRLSDWKSRNLSMGGRLILLKPVLSSIPVYFLSFFKAPSGIISTLESLFNAFFW 75
L +R+ +R+ W + LS GG+ IL+K VL ++PVY + FK P + L L F+W
Sbjct: 1338 LQERLWKRIMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWW 1397
Query: 76 GGCEDIRKITWIKWETVCSRKGEGGLGVRRLREFNLALLGKWWWRILQERGTLWYRVLCA 135
G + +R+ W W+ + ++K +GG+G R R FN ALL + WR+L +L R+L A
Sbjct: 1398 GAEKGMRRTHWKSWDCLIAQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKA 1457
Query: 136 RYGEEGGRLCCSCRDGGSVWWQTILDVRDGVGQIDSGWMLDNISRRVGNGLSTLFWVDPW 195
Y G + S S W+ I G+ + G I R+GNG S W DPW
Sbjct: 1458 IYYPNGSLIDTSFGGNASPGWRAI---EYGLELLKKG-----IIWRIGNGKSVRLWRDPW 1509
Query: 196 L----EEKPLS*RRINYTRWPSCL 215
+ +P+S +R RW S L
Sbjct: 1510 IPRSYSRRPISAKRNCRLRWVSDL 1533
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.350 0.159 0.603
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 626,599,331
Number of Sequences: 2540612
Number of extensions: 26472181
Number of successful extensions: 93266
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 92738
Number of HSP's gapped (non-prelim): 353
length of query: 366
length of database: 863,360,394
effective HSP length: 129
effective length of query: 237
effective length of database: 535,621,446
effective search space: 126942282702
effective search space used: 126942282702
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 76 (33.9 bits)
Medicago: description of AC144345.7