BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143339.8 + phase: 0 /pseudo
(518 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 125 2e-27
gb|AAY23271.1| retrotransposon protein, putative, unclassified [... 125 2e-27
gb|AAP52994.1| putative retroelement [Oryza sativa (japonica cul... 122 2e-26
gb|AAM19043.1| putative reverse transcriptase [Oryza sativa (jap... 122 2e-26
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 122 3e-26
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 122 4e-26
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 119 2e-25
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 119 3e-25
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 119 3e-25
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 119 3e-25
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 118 5e-25
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 117 1e-24
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 117 1e-24
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 116 1e-24
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 116 1e-24
gb|AAX92720.1| retrotransposon protein, putative, unclassified [... 115 3e-24
ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II B... 111 5e-23
ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (j... 111 5e-23
dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica ... 111 5e-23
gb|AAX96121.1| retrotransposon protein, putative, unclassified [... 110 1e-22
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 125 bits (315), Expect = 2e-27
Identities = 78/201 (38%), Positives = 112/201 (54%), Gaps = 2/201 (0%)
Query: 18 FPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMVISHLQFADDT 77
F ++GLR+GDPLS LF L A+ L++++Q + F G D+ +S LQ+ADDT
Sbjct: 81 FQTKKGLRQGDPLSPILFNLVADMLSILIQRAKDQGRFQGVIPHLVDNG-LSILQYADDT 139
Query: 78 LLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEATTMLGCKVGK 137
+L V+ L+ VL +GLK+NFHKS L S+ NE + GC+ G
Sbjct: 140 ILFMEHDLDEVKNLKLVLSTFEKL-AGLKINFHKSELFCYGKSKFAENEYVMLFGCRSGT 198
Query: 138 VPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKVFLSSLHVYAL 197
PF YLG+ + W+ + +R +++LS W+ K LS GGRLVL+ LSSL ++ L
Sbjct: 199 YPFRYLGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLINSVLSSLAMFML 258
Query: 198 SFFRAPSGIISTLESLFINFF 218
SFF P GI+ L+ FF
Sbjct: 259 SFFEVPKGILKKLDYYRSRFF 279
>gb|AAY23271.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 885
Score = 125 bits (315), Expect = 2e-27
Identities = 80/218 (36%), Positives = 117/218 (52%), Gaps = 2/218 (0%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I ++ V VN F ++G+R+GDPLS LF + A+ L V++ E +G +
Sbjct: 608 ISGGSVVVKVNDEVGHFFQTKKGVRQGDPLSPILFNIIADMLTVLINRAKEDGQITGV-V 666
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVS 120
+ +S LQ+ADDT+L R ++ +L + SGLK+NFHKS L
Sbjct: 667 PHLINDDLSILQYADDTVLFMGHDLQKARNMKLLLFVFEQL-SGLKINFHKSELYCFGEG 725
Query: 121 ESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGG 180
+ + NE + GC G+ PF YLG+ I R W+ VV+ +KRLS W+ K LS GG
Sbjct: 726 KDFENEYMELFGCSTGQFPFRYLGIPIHYRRLRNADWKEVVECFEKRLSSWKGKLLSTGG 785
Query: 181 RLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
RL L+ LSSL +Y +SFF P GI++ L+ F+
Sbjct: 786 RLTLINSVLSSLPLYMMSFFAIPIGILTKLDYFRSRFY 823
>gb|AAP52994.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532810|ref|NP_920707.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20043011|gb|AAM08819.1| Putative retroelement [Oryza
sativa]
Length = 1265
Score = 122 bits (307), Expect = 2e-26
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Query: 4 ATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEH 63
A + + + G P F RGLR+GDPLS LF L + L V+++ E I G + +
Sbjct: 1045 AKVSINIYGDQGPFFRTFRGLRQGDPLSPLLFNLVGDALAVILEKAKERGILKGL-VPDL 1103
Query: 64 DSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESW 123
+SHLQ+ADDT+L NVR L+ +L SG+K+N+ KS + + V +
Sbjct: 1104 VPRGLSHLQYADDTILFIKVGDDNVRVLKFLLFCFEEM-SGMKINYQKSEVYVLGVDKEE 1162
Query: 124 LNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLV 183
ML CKVG +PF YLGL + + + + ++ +V+KRL W+S +L++GGR +
Sbjct: 1163 EIRIANMLNCKVGTMPFTYLGLPMHCEKVGMKDFRLIIQKVEKRLQTWKSGYLTYGGRKI 1222
Query: 184 LLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGV 222
+ +SS +YA+ F+ P ++SL NF+ G+
Sbjct: 1223 KINSCMSSAPMYAMGFYYLPREFHKKMDSLRGNFYWQGL 1261
>gb|AAM19043.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1259
Score = 122 bits (307), Expect = 2e-26
Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 2/219 (0%)
Query: 4 ATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEH 63
A + + + G P F RGLR+GDPLS LF L + L V+++ E I G + +
Sbjct: 1039 AKVSINIYGDQGPFFRTFRGLRQGDPLSPLLFNLVGDALAVILEKAKERGILKGL-VPDL 1097
Query: 64 DSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESW 123
+SHLQ+ADDT+L NVR L+ +L SG+K+N+ KS + + V +
Sbjct: 1098 VPRGLSHLQYADDTILFIKVGDDNVRVLKFLLFCFEEM-SGMKINYQKSEVYVLGVDKEE 1156
Query: 124 LNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLV 183
ML CKVG +PF YLGL + + + + ++ +V+KRL W+S +L++GGR +
Sbjct: 1157 EIRIANMLNCKVGTMPFTYLGLPMHCEKVGMKDFRLIIQKVEKRLQTWKSGYLTYGGRKI 1216
Query: 184 LLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGV 222
+ +SS +YA+ F+ P ++SL NF+ G+
Sbjct: 1217 KINSCMSSAPMYAMGFYYLPREFHKKMDSLRGNFYWQGL 1255
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 122 bits (306), Expect = 3e-26
Identities = 78/228 (34%), Positives = 118/228 (51%), Gaps = 16/228 (7%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
I ++ V VN P F ++GL++GDPLS LF + L ++ +
Sbjct: 843 IVGGSVAVKVNDDVGPFFQTKKGLQQGDPLSPILFNFIVDMLATLINR--------AKTQ 894
Query: 61 GEHDSMV-------ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSL 113
G+ D ++ +S LQ+ DD +L + +++VLL SGLK+NFHKS
Sbjct: 895 GQVDGLIPHLIDGGLSILQYVDDIVLFMNHDLEKAQNMKSVLLAFEQL-SGLKINFHKSE 953
Query: 114 LVGVNVSESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRS 173
L + + ++ + GC+VG PF YLG+ I R W+ VV+R +K+LS W+
Sbjct: 954 LYCFGEALEYRDQYAQLFGCQVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKG 1013
Query: 174 KFLSFGGRLVLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
K LS GGRL L+ LSSL +Y +SF PSG++ L+ L F+ G
Sbjct: 1014 KLLSLGGRLTLINSVLSSLPMYMMSFLAIPSGVLKKLDYLRSRFYWQG 1061
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 122 bits (305), Expect = 4e-26
Identities = 84/211 (39%), Positives = 108/211 (50%), Gaps = 2/211 (0%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
V VN F ++GLR+GDPLS LF L A+ L V++Q E G D
Sbjct: 68 VKVNDEIGNFFQTKKGLRQGDPLSPLLFNLVADMLAVLIQRTSEHGKIHGVIPHLVDDG- 126
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEA 127
+S LQ+ADDT+L + + L+ VL SGLK+NFHKS L+ + E
Sbjct: 127 LSILQYADDTILFMEHDLEDAKNLKLVLSAFERL-SGLKINFHKSELLCFGKAIEVEREY 185
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKV 187
+ GCK G YLGL + W+ V +R +KRL W+ K LS GGRLVL+
Sbjct: 186 ALLFGCKTGSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINS 245
Query: 188 FLSSLHVYALSFFRAPSGIISTLESLFINFF 218
LSSL +Y LSFF P GII L+ FF
Sbjct: 246 VLSSLAMYMLSFFEVPKGIIKKLDYYRSRFF 276
Score = 52.4 bits (124), Expect = 3e-05
Identities = 38/125 (30%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 381 LWAWEEELLGECRILLSDITLQ-HTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVLLD 439
L AW E + + DI L+ DR+ W + ++VN +Y+ L V +
Sbjct: 428 LKAWHEIVAN-----VVDINLRGQKDRFTWDASKNGTFTVNSMYKKLMFGNVIPRQ---S 479
Query: 440 LIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRS 499
IW ++PLK+ IF W L + + TKDNL + C C ET Q+LF
Sbjct: 480 FIWKLRLPLKIKIFLWYLKEGVILTKDNLAKR----RWKGSLRCCF-CRSHETIQYLFFD 534
Query: 500 CPFYV 504
CP +
Sbjct: 535 CPMVI 539
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 119 bits (299), Expect = 2e-25
Identities = 78/211 (36%), Positives = 110/211 (51%), Gaps = 2/211 (0%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
V VN F +GLR+GDPLS LF L + L +++Q + F G D+
Sbjct: 1333 VKVNDEIGSYFQTRKGLRQGDPLSPILFNLVVDMLAILIQRAKDQGRFKGVVPHLVDNG- 1391
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEA 127
+S LQ+ADDT+L R L+ VL S LK+NF+KS L ++ +E
Sbjct: 1392 LSILQYADDTILFMDHDLDEARDLKLVLSTFEKL-SSLKINFYKSELFCYGKAKDVEHEY 1450
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKV 187
+ GC PF YLG+ + W+ V +R++K+LS W+ KFLS GGRLVL+
Sbjct: 1451 VKLFGCDTEDYPFKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINS 1510
Query: 188 FLSSLHVYALSFFRAPSGIISTLESLFINFF 218
LS+L ++ LSFF P GI+ L+ FF
Sbjct: 1511 VLSNLAIFMLSFFEIPKGILKKLDYYRSRFF 1541
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 119 bits (297), Expect = 3e-25
Identities = 77/212 (36%), Positives = 120/212 (56%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VLVNG P +RG+R+GDPLS +LF+L A+ LN ++++ V G IG +
Sbjct: 979 VLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIG-NGVPG 1037
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
++HLQFADD+L + N +AL+ V + SG K+N KS++ G V + N
Sbjct: 1038 VTHLQFADDSLFFCQSNVRNCQALKDVFDVYE-YYSGQKINMSKSMITFGSRVHGTTQNR 1096
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+LG + YLGL ++ + +++RVKKR S W +K+LS G+ ++LK
Sbjct: 1097 LKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLK 1156
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
S+ VYA+S F+ P I+S +E+L +NF+
Sbjct: 1157 SVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW 1188
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 119 bits (297), Expect = 3e-25
Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 3/220 (1%)
Query: 10 VNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMVIS 69
+NG T F RGLR+GDPLS LF L ++ L M+ S + SG + + I+
Sbjct: 1246 INGERTDFFRTFRGLRQGDPLSPLLFNLISDALAAMLDSAKREGVLSGL-VPDIFPGGIT 1304
Query: 70 HLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEATT 129
HLQ+ADDT+L + A + +L + LK+N+HKS + + +S++ N
Sbjct: 1305 HLQYADDTVLFVANDDKQIVATKFILYCFEEM-AVLKVNYHKSEIFTLGLSDNDTNRVAM 1363
Query: 130 MLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKVFL 189
M C VG+ P YLGL IG D L ++ + +++KRL+ W + LS GR V + L
Sbjct: 1364 MFNCPVGQFPMKYLGLPIGPDKILNLGFDFLGQKLEKRLNSWGNN-LSHAGRAVQINTCL 1422
Query: 190 SSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFH 229
SS+ YA+ F++ P G+ S+ ++ R+ GK+H
Sbjct: 1423 SSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYH 1462
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 119 bits (297), Expect = 3e-25
Identities = 77/212 (36%), Positives = 120/212 (56%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VLVNG P +RG+R+GDPLS +LF+L A+ LN ++++ V G IG +
Sbjct: 999 VLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIG-NGVPG 1057
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
++HLQFADD+L + N +AL+ V + SG K+N KS++ G V + N
Sbjct: 1058 VTHLQFADDSLFFCQSNVRNCQALKDVFDVYE-YYSGQKINMSKSMITFGSRVHGTTQNR 1116
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+LG + YLGL ++ + +++RVKKR S W +K+LS G+ ++LK
Sbjct: 1117 LKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSPAGKEIMLK 1176
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
S+ VYA+S F+ P I+S +E+L +NF+
Sbjct: 1177 SVAMSMPVYAMSCFKLPLNIVSEIEALLMNFW 1208
Score = 42.0 bits (97), Expect = 0.047
Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 26/106 (24%)
Query: 403 HTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVLLDLIWHKQVPLKVSIFAWRLLQNRL 462
H D+ VW S Y+ +W + K+ WR + L
Sbjct: 1346 HQDKLVWNYSSSGDYT----------------------LWKLPIIPKIKYMLWRTISKAL 1383
Query: 463 PTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALWG 508
PT+ L G+ + HC + ET H+ +CP+ ++WG
Sbjct: 1384 PTRSRLLTRGM----DIDPHCPRCPTEEETINHVLFTCPYAASIWG 1425
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 118 bits (295), Expect = 5e-25
Identities = 78/212 (36%), Positives = 117/212 (54%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ +++ G IG + +
Sbjct: 238 VLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIG-NGAPA 296
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KSL+ G V S
Sbjct: 297 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSLITFGSRVYGSTQTR 355
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
T+L YLGL ++ + ++DRVK+R + W +KFLS G+ +LLK
Sbjct: 356 LKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLK 415
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 416 SVALAMPVYAMSCFKLPQGIVSEIESLLMNFW 447
Score = 52.0 bits (123), Expect = 5e-05
Identities = 37/124 (29%), Positives = 53/124 (41%), Gaps = 15/124 (12%)
Query: 393 RILLSDITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWH 443
RI LS T TDR +W + + Y+V Y + T P T + +DL IW+
Sbjct: 612 RIYLS--TRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSNTIPTMAKPHGSVDLKTKIWN 669
Query: 444 KQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFY 503
+ K+ F WR+L LPT D L G+ + C + E+ H +CPF
Sbjct: 670 LPIMPKLKHFLWRILSKALPTTDRLTTRGM----RIDPGCPRCRRENESINHALFTCPFA 725
Query: 504 VALW 507
W
Sbjct: 726 TMAW 729
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 117 bits (292), Expect = 1e-24
Identities = 77/212 (36%), Positives = 118/212 (55%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ ++ G IG + +
Sbjct: 773 VLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPA 831
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KS++ G V S ++
Sbjct: 832 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSMITFGSRVYGSTQSK 890
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+L YLGL ++ +E ++DRVKKR S W ++FLS G+ ++LK
Sbjct: 891 LKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLK 950
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 951 SVALAMPVYAMSCFKLPKGIVSEIESLLMNFW 982
Score = 42.0 bits (97), Expect = 0.047
Identities = 29/117 (24%), Positives = 44/117 (36%), Gaps = 23/117 (19%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWHKQVPLKVSIFAW 455
D+ +W + + Y+V Y +LT P + +DL IW+ + K+ F W
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1216
Query: 456 RLLQNRLPTKDNLCVHG-----VIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
R L L T + L G + P H E+ H +CPF W
Sbjct: 1217 RALSQALATTERLTTRGMRIDPICPRCHREN---------ESINHALFTCPFATMAW 1264
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 117 bits (292), Expect = 1e-24
Identities = 67/224 (29%), Positives = 119/224 (52%), Gaps = 8/224 (3%)
Query: 6 MYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDS 65
M V +NG F RG+R+GDPLS LF L A+ L+ M+ + + ++
Sbjct: 159 MAVNINGEVKDFFKTYRGVRQGDPLSPLLFNLVADALSEMLNNAKQ-------AVPHLVP 211
Query: 66 MVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLN 125
++HLQ+ADDT+L + N+ ++ +L SGLK+N+ KS ++ + E
Sbjct: 212 GGLTHLQYADDTILFMTNTEENIVTVKFLLYCYE-AMSGLKINYQKSEIMVIGGDEMETQ 270
Query: 126 EATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLL 185
+ C+ GK+PF YLG+ I + + ++++KRL+ W+ +LS+GG+ +L+
Sbjct: 271 RVADLFNCQAGKMPFTYLGIPISMNKLTNADLDIPPNKIEKRLATWKCGYLSYGGKAILI 330
Query: 186 KVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFH 229
LSS+ +Y + + P G+ + ++S+ FF G+ K+H
Sbjct: 331 NSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYH 374
Score = 42.7 bits (99), Expect = 0.027
Identities = 31/114 (27%), Positives = 48/114 (41%), Gaps = 7/114 (6%)
Query: 402 QHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVLLDLIWHKQVPLKVSIFAWRLLQNR 461
+ D +W+L + Y +YQ L+ V+ +V+ DL W +PLKV I W +L+ R
Sbjct: 539 EERDCIIWKLTKNGFYKAKTLYQALSFGGVK-DKVMQDL-WRSSIPLKVKILFWLMLKGR 596
Query: 462 LPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALWGQIRSWLG 515
+ L + +C + CG E HL C +W R G
Sbjct: 597 IQAAGQL----KKMKWSGSPNCKL-CGQTEDVDHLMFRCHISQFMWCCYRDAFG 645
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 116 bits (291), Expect = 1e-24
Identities = 77/212 (36%), Positives = 117/212 (54%), Gaps = 3/212 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
VL+NGSP RG+R+GDPLS +LF+L + L+ ++ G IG + +
Sbjct: 999 VLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG-NGAPA 1057
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLV-GVNVSESWLNE 126
I+HLQFADD+L + N +AL+ V + SG K+N KS++ G V S +
Sbjct: 1058 ITHLQFADDSLFFCQANVRNCQALKDVFDVYE-YYSGQKINVQKSMITFGSRVYGSTQSR 1116
Query: 127 ATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLK 186
+L YLGL ++ +E ++DRVKKR S W ++FLS G+ ++LK
Sbjct: 1117 LKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLK 1176
Query: 187 VFLSSLHVYALSFFRAPSGIISTLESLFINFF 218
++ VYA+S F+ P GI+S +ESL +NF+
Sbjct: 1177 SVALAMPVYAMSCFKLPKGIVSEIESLLMNFW 1208
Score = 41.6 bits (96), Expect = 0.061
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 405 DRWVWRLDPSNGYSVNGVYQMLTSQPVQTSEVL------LDL---IWHKQVPLKVSIFAW 455
D+ +W + + Y+V Y +LT P + +DL IW+ + K+ F W
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLW 1442
Query: 456 RLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSCPFYVALW 507
R L L T + L G+ + C + E+ H +CPF W
Sbjct: 1443 RALSQALATTERLTTRGM----RIDPSCPRCHRENESINHALFTCPFATMAW 1490
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 116 bits (291), Expect = 1e-24
Identities = 76/224 (33%), Positives = 123/224 (53%), Gaps = 7/224 (3%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
V VN F +GLR+GDPLS LF LAAE L +++Q E ++ G +G +
Sbjct: 425 VKVNDQIGSFFKTHKGLRQGDPLSPLLFNLAAEALTLLVQRAEENSLIEG--LGTNGDNK 482
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEA 127
I+ LQ+ADDT+ + + + L+ +L L SGLK+NF+KS + ++ +
Sbjct: 483 IAILQYADDTIFLINDKLDHAKNLKYILCLFEQL-SGLKINFNKSEVFCFGEAKEKQDLY 541
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLF--WESVVDRVKKRLSGWRSKFLSFGGRLVLL 185
+ + CKVG +P YLG+ I D +R+L W+ ++++ +L W+ + S GGRL+LL
Sbjct: 542 SNIFTCKVGSLPLKYLGIPI--DQKRILNKDWKLAENKMEHKLGCWQGRLQSIGGRLILL 599
Query: 186 KVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFH 229
LSS+ +Y +SF+R P G+ ++ F + I K+H
Sbjct: 600 NSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYH 643
Score = 61.2 bits (147), Expect = 7e-08
Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 377 WRRRLWAWEE-ELLGECRILLSDITLQHTDRWVWRLDPSNGYSVNGVYQMLTSQPVQTSE 435
WR+ + +WE L+ C+ D+ W L ++V Y+ L Q
Sbjct: 793 WRKIVNSWEGLNLVENCK-----------DKLWWTLSKDGKFTVRSFYRALKLQQTSFPN 841
Query: 436 VLLDLIWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQH 495
IW +VPLK+ IF W +N++ TKDNL G DN+ C C ET QH
Sbjct: 842 ---KKIWKFRVPLKIRIFIWFFTKNKILTKDNLLKRGW--RKGDNK-CQF-CDKVETVQH 894
Query: 496 LFRSCPFYVALWGQIRSWLGI 516
LF CP +W I L +
Sbjct: 895 LFFDCPLARLIWNIIACALNV 915
>gb|AAX92720.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62701880|gb|AAX92953.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 838
Score = 115 bits (289), Expect = 3e-24
Identities = 73/224 (32%), Positives = 122/224 (53%), Gaps = 7/224 (3%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
V VN P F +GLR+GDPLS LF LAA+ L +++Q + + G +GE+D+
Sbjct: 587 VQVNDQVGPYFKTHKGLRQGDPLSPLLFNLAAKALILLVQRAEDNLLIEG--LGENDNNK 644
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEA 127
+ LQ+ADDT+ + + + L+ +L L SGLK+NF+KS + + +
Sbjct: 645 VVILQYADDTIFLLPDNETYAKNLKYILCLFEQL-SGLKINFNKSEVFCIGEAADKAEVF 703
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLF--WESVVDRVKKRLSGWRSKFLSFGGRLVLL 185
+ + C VG +P YLG+ + D +R+ W + ++++ +L W+ K S GGRL+L+
Sbjct: 704 SQIFTCSVGVLPMKYLGIPL--DQKRITKKDWRNAENKMESKLGCWQGKLQSIGGRLILI 761
Query: 186 KVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVGVRIIGKFH 229
LSS+ +Y +SFF+ P G+ ++ F + I K+H
Sbjct: 762 NSSLSSVPMYMISFFKLPKGVKEKMDFFRRRFLWQEDQGIRKYH 805
>ref|NP_910568.1| Similar to Arabidopsis thaliana chromosome II BAC F13B15 genomic
sequence, putative non-LTR retroelement reverse
transcriptase. (AC006300) [Oryza sativa (japonica
cultivar-group)]
Length = 1285
Score = 111 bits (278), Expect = 5e-23
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 2/191 (1%)
Query: 10 VNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMVIS 69
+N F RGLR+GD LS LF L + L ++ E + G D ++
Sbjct: 994 INSKQGHFFKTYRGLRQGDHLSPILFNLVGDALAAILDKAKEWGVLEGLVPNLVDGG-LT 1052
Query: 70 HLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEATT 129
HLQ+ADDT+L S N+ AL+ +L SG+K+N+ KS + + V +S
Sbjct: 1053 HLQYADDTILFIKNSDENILALKFLLFCYEEM-SGMKINYQKSDVYVIGVEDSEGLRIAN 1111
Query: 130 MLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKVFL 189
ML CK+GK+PF YLGL +G D + + +V+KRL W+S L++GGR + + +L
Sbjct: 1112 MLNCKIGKMPFTYLGLPMGVDRIGMRDLSPIFQKVEKRLQSWKSCHLTYGGRGIKINSYL 1171
Query: 190 SSLHVYALSFF 200
SS +YA+ F+
Sbjct: 1172 SSAPMYAMVFY 1182
>ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29126371|gb|AAO66563.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 746
Score = 111 bits (278), Expect = 5e-23
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 4/211 (1%)
Query: 1 ICTATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSI 60
+ T++ VL+NG P F +RG+++GDP+S LF+LAA+ L M + I S I
Sbjct: 366 LSTSSSSVLLNGVPGKFFDCKRGVKQGDPISPLLFVLAADLLQSMTNRALSNGILS-LPI 424
Query: 61 GEHDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVS 120
HD + +Q+ADDTL++ + L+ +L +GLK+N+ KS ++ +NV
Sbjct: 425 PTHD-LKFPIIQYADDTLIIMKACQKEIFNLKGILQSYSES-TGLKINYQKSCMIHINVL 482
Query: 121 ESWLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGG 180
E + + GC+ G +PF YLGL +G +++ + ++DRV++RL + FL+ G
Sbjct: 483 EEDKDILSKTFGCQSGNLPFTYLGLPVGTTKPKIIDFAPLIDRVERRLPA-VTMFLNHGQ 541
Query: 181 RLVLLKVFLSSLHVYALSFFRAPSGIISTLE 211
RL L+ LSSL Y + + P +I ++
Sbjct: 542 RLTLVNFVLSSLPTYYMCSLKIPKKVIDHID 572
>dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 111 bits (278), Expect = 5e-23
Identities = 72/219 (32%), Positives = 120/219 (53%), Gaps = 7/219 (3%)
Query: 3 TATMYVLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGE 62
T+ VL+NG P ++GLR+GDPLS +LF+L A+ ++Q ++E N + I
Sbjct: 622 TSKSAVLLNGIPGKWINCKKGLRQGDPLSPYLFILVAD----VLQRLLEKNFQIRHPI-- 675
Query: 63 HDSMVISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSES 122
+ + +Q+ADDTL++ +V ALR+ LL +GL++NF KS ++ +++ S
Sbjct: 676 YQDRPCATIQYADDTLVICRAEEDDVLALRSTLLQFSKA-TGLQINFAKSTMISLHIDRS 734
Query: 123 WLNEATTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRL 182
+ + +L CK+ +P YLGL + + +V +V L+GW + LS RL
Sbjct: 735 KESSLSELLQCKLESLPMSYLGLPLSLHKLTNNDLQPIVVKVDSFLTGWEASLLSQAERL 794
Query: 183 VLLKVFLSSLHVYALSFFRAPSGIISTLESLFINFFLVG 221
+L+ LSS+ VYA+S F+ P +I ++ FF G
Sbjct: 795 ILVNAVLSSVPVYAMSAFKLPPKVIEAIDKRRRAFFWTG 833
Score = 52.0 bits (123), Expect = 5e-05
Identities = 26/67 (38%), Positives = 38/67 (55%), Gaps = 4/67 (5%)
Query: 441 IWHKQVPLKVSIFAWRLLQNRLPTKDNLCVHGVIPHSHDNQHCVIGCGDFETAQHLFRSC 500
IW ++PLK+ +FAW L+++RL TK NL ++ C I ETA HL +C
Sbjct: 1036 IWDCRMPLKIKLFAWLLVRDRLSTKLNLLKKKIV----QTATCDICSTTDETADHLSFNC 1091
Query: 501 PFYVALW 507
PF ++ W
Sbjct: 1092 PFAISFW 1098
>gb|AAX96121.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1556
Score = 110 bits (274), Expect = 1e-22
Identities = 71/188 (37%), Positives = 102/188 (53%), Gaps = 2/188 (1%)
Query: 8 VLVNGSPTPEFPLERGLRKGDPLSQFLFLLAAEGLNVMMQSMVEINIFSGYSIGEHDSMV 67
V VN F ++GLR+GDPLS LF L A+ L +++ ++ +G I +
Sbjct: 1351 VKVNDEIGHFFQTKKGLRQGDPLSPILFNLVADMLAILINRARDLETLNGV-IPQLVDNG 1409
Query: 68 ISHLQFADDTLLVGVKSWANVRALRAVLLLLR*CRSGLKMNFHKSLLVGVNVSESWLNEA 127
+S LQ+ADDT+L L+ VL SGLK+NFHKS + ++ +
Sbjct: 1410 LSILQYADDTILFMDHDLVKANNLKLVLAAFERL-SGLKINFHKSEMFCFGKAKEVEKDY 1468
Query: 128 TTMLGCKVGKVPFLYLGLSIGGDPRRLLFWESVVDRVKKRLSGWRSKFLSFGGRLVLLKV 187
TT+ GCK+G PF YLGL + W+ + D+ +K+LS WR KFLS GG+LVL+
Sbjct: 1469 TTLFGCKMGTFPFRYLGLPMHFKRLSNKDWKDLEDKFQKKLSCWRGKFLSSGGKLVLINS 1528
Query: 188 FLSSLHVY 195
LSSL +
Sbjct: 1529 VLSSLATF 1536
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.338 0.150 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 876,539,688
Number of Sequences: 2540612
Number of extensions: 36310002
Number of successful extensions: 110409
Number of sequences better than 10.0: 624
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 109273
Number of HSP's gapped (non-prelim): 903
length of query: 518
length of database: 863,360,394
effective HSP length: 133
effective length of query: 385
effective length of database: 525,458,998
effective search space: 202301714230
effective search space used: 202301714230
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 77 (34.3 bits)
Medicago: description of AC143339.8