BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC143337.8 - phase: 0
(97 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA02114.1| GTP-binding protein [Pisum sativum] gi|7438433|p... 181 5e-45
emb|CAA98180.1| RAB11D [Lotus corniculatus var. japonicus] gi|30... 176 1e-43
gb|AAN03473.1| small GTP-binding protein [Glycine max] 171 3e-42
emb|CAA98181.1| RAB11E [Lotus corniculatus var. japonicus] gi|30... 157 5e-38
emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum] 150 6e-36
emb|CAA45351.1| Np-ypt3 [Nicotiana plumbaginifolia] gi|267527|sp... 147 5e-35
gb|AAG48791.1| putative GTP-binding protein RAB11D [Arabidopsis ... 145 2e-34
gb|AAN03472.1| GTP-binding protein [Glycine max] 144 7e-34
emb|CAA82709.1| guanine nucleotide regulatory protein [Vicia fab... 141 5e-33
gb|AAT64010.1| putative GTP-binding protein [Gossypium hirsutum] 141 5e-33
emb|CAA55865.1| Rab [Medicago sativa] gi|629626|pir||S45023 GTP-... 140 6e-33
gb|AAP92129.1| GTP-binding protein GTP1 [Oryza sativa (japonica ... 140 1e-32
gb|AAP21214.1| At1g16920 [Arabidopsis thaliana] gi|15219955|ref|... 139 1e-32
ref|XP_475714.1| putative GTP-binding protein RIC2 [Oryza sativa... 139 1e-32
gb|AAM63927.1| guanine nucleotide regulatory protein, putative [... 139 1e-32
gb|AAT64023.1| putative GTP-binding protein [Gossypium hirsutum] 139 2e-32
dbj|BAA02904.1| ras-related GTP binding protein [Oryza sativa] g... 137 5e-32
gb|AAK15703.1| GTP-binding protein [Oryza sativa] gi|53792703|db... 137 5e-32
emb|CAB78882.1| ras-like GTP-binding protein [Arabidopsis thalia... 135 3e-31
gb|AAL15217.1| putative Rab-type small GTP-binding protein [Arab... 134 6e-31
>dbj|BAA02114.1| GTP-binding protein [Pisum sativum] gi|7438433|pir||T06448
GTP-binding protein - garden pea gi|738938|prf||2001457F
GTP-binding protein
Length = 218
Score = 181 bits (458), Expect = 5e-45
Identities = 91/97 (93%), Positives = 94/97 (96%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAF+EVLSQIY IVSKK
Sbjct: 122 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFSEVLSQIYHIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAGE GSSS+VPS+GQTINVKEDSSV KRFGCCSN
Sbjct: 182 AVEAGESGSSSAVPSIGQTINVKEDSSVFKRFGCCSN 218
>emb|CAA98180.1| RAB11D [Lotus corniculatus var. japonicus]
gi|3024502|sp|Q40194|R11D_LOTJA Ras-related protein
Rab11D
Length = 218
Score = 176 bits (447), Expect = 1e-43
Identities = 89/96 (92%), Positives = 93/96 (96%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVL+QIYRIVSK+
Sbjct: 122 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
AVEAG+ GSSS +PS GQTINVKEDSSVLKRFGCCS
Sbjct: 182 AVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217
>gb|AAN03473.1| small GTP-binding protein [Glycine max]
Length = 218
Score = 171 bits (434), Expect = 3e-42
Identities = 86/97 (88%), Positives = 92/97 (94%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAVPTEDGKSFAE+ESLYFMETSALEATNVENAFTEVLSQIYRIVSK+
Sbjct: 122 MLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEAG+ SSS+VPS GQTINVK+DSSVLK+ GCCSN
Sbjct: 182 TVEAGKNASSSAVPSKGQTINVKDDSSVLKKIGCCSN 218
>emb|CAA98181.1| RAB11E [Lotus corniculatus var. japonicus]
gi|3024529|sp|Q40195|R11E_LOTJA Ras-related protein
Rab11E
Length = 218
Score = 157 bits (398), Expect = 5e-38
Identities = 80/97 (82%), Positives = 88/97 (90%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLV V TEDGK+FAE+ESLYFMETSALEATNVENAF+EVL+QIYRIVSK+
Sbjct: 122 MLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAG+ S+S VPS GQTINV EDSSVL R+ CCSN
Sbjct: 182 AVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218
>emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum]
Length = 218
Score = 150 bits (380), Expect = 6e-36
Identities = 73/97 (75%), Positives = 86/97 (88%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TE+ KS AERE+LYFMETSALEATNVENAFTE L+QIYRIVSKK
Sbjct: 122 MLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAG+ G++S+ P GQTIN+K++ S K+FGCCS+
Sbjct: 182 AVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS 218
>emb|CAA45351.1| Np-ypt3 [Nicotiana plumbaginifolia] gi|267527|sp|Q01111|YPT3_NICPL
Ras-related protein YPT3
Length = 218
Score = 147 bits (372), Expect = 5e-35
Identities = 72/97 (74%), Positives = 84/97 (86%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAV T++ K AERE LYFMETSALEATNVENAFTE L+QIYRIVSKK
Sbjct: 122 MLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVEAG+ G++SS P G+TIN+K++ S K+FGCCS+
Sbjct: 182 AVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218
>gb|AAG48791.1| putative GTP-binding protein RAB11D [Arabidopsis thaliana]
gi|20465351|gb|AAM20079.1| putative GTP-binding protein
[Arabidopsis thaliana] gi|17644169|gb|AAL38782.1|
putative GTP-binding protein RAB11D [Arabidopsis
thaliana] gi|217835|dbj|BAA00829.1| small GTP-binding
protein [Arabidopsis thaliana]
gi|15221477|ref|NP_172128.1| Ras-related GTP-binding
protein (ARA-2) [Arabidopsis thaliana]
gi|8927677|gb|AAF82168.1| Contains similarity to a Rab11
GTPase (Rab11a gene) from Lycopersicon esculentum
gb|AJ245570 and is a member of the Ras family PF|00071.
ESTs gb|T46264, gb|AI099600, gb|AA404778, gb|AI997429,
gb|T88574 come from this gene. [Arabidopsis thaliana]
gi|320559|pir||JS0639 GTP-binding protein ara2 -
Arabidopsis thaliana gi|114086|sp|P28185|ARA2_ARATH
Ras-related protein ARA-2
Length = 216
Score = 145 bits (367), Expect = 2e-34
Identities = 73/97 (75%), Positives = 85/97 (87%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNK DLRHLVAV TE+ K+FAERESLYFMETSAL+ATNVENAFTEVL+QI++IVSK+
Sbjct: 122 MLIGNKCDLRHLVAVKTEEAKAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKR 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
+V+ GG S+ +P G+TINVKED SVLKR GCCSN
Sbjct: 182 SVDG--GGESADLPGKGETINVKEDGSVLKRMGCCSN 216
>gb|AAN03472.1| GTP-binding protein [Glycine max]
Length = 217
Score = 144 bits (362), Expect = 7e-34
Identities = 73/97 (75%), Positives = 84/97 (86%), Gaps = 1/97 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGKS+AE+ESLYFMETSALEATNVENAF EVL+QIY IVSKK
Sbjct: 122 MLVGNKSDLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYHIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVE E G ++SVP+ G+ I++K D S LKR GCCS+
Sbjct: 182 AVEVAENG-TTSVPAKGEKIDLKNDVSALKRVGCCSS 217
>emb|CAA82709.1| guanine nucleotide regulatory protein [Vicia faba]
gi|303744|dbj|BAA02113.1| GTP-binding protein [Pisum
sativum] gi|541979|pir||S41431 GTP-binding protein,
ras-like - fava bean gi|1098295|prf||2115367C small
GTP-binding protein gi|738937|prf||2001457E GTP-binding
protein
Length = 217
Score = 141 bits (355), Expect = 5e-33
Identities = 71/97 (73%), Positives = 83/97 (85%), Gaps = 1/97 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNK+DLRHLVAV TEDGKS+AE+ESLYFMETSALEATNVENAF EVL+QIY IVSKK
Sbjct: 122 MLVGNKADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENAFAEVLTQIYHIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VE E G ++SVP+ G+ I++K D S LKR GCCS+
Sbjct: 182 TVEGAENG-NASVPAKGEKIDLKNDVSALKRVGCCSS 217
>gb|AAT64010.1| putative GTP-binding protein [Gossypium hirsutum]
Length = 218
Score = 141 bits (355), Expect = 5e-33
Identities = 70/97 (72%), Positives = 84/97 (86%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGKSFAE+ESLYFMETSALEATNVE AF EVL+QIY IVSKK
Sbjct: 122 MLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVEIAFAEVLTQIYNIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
A+E + G++S+VPS G+ I+V +D S +K+ GCCS+
Sbjct: 182 AMETSDDGAASAVPSKGEKIDVGKDVSAMKKGGCCSS 218
>emb|CAA55865.1| Rab [Medicago sativa] gi|629626|pir||S45023 GTP-binding protein Rab
- alfalfa
Length = 217
Score = 140 bits (354), Expect = 6e-33
Identities = 70/97 (72%), Positives = 85/97 (87%), Gaps = 1/97 (1%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
+L+GNK+DLRHLVAV TEDGKS+AE+ESLYFMETSALEATNVEN+F EVL+QIYRI+SKK
Sbjct: 122 VLVGNKADLRHLVAVSTEDGKSYAEKESLYFMETSALEATNVENSFAEVLTQIYRILSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
AVE E G ++SVP+ G+ I++K D S LKR GCCS+
Sbjct: 182 AVEGAENG-NASVPAKGEKIDLKNDVSALKRVGCCSS 217
>gb|AAP92129.1| GTP-binding protein GTP1 [Oryza sativa (japonica cultivar-group)]
gi|34909538|ref|NP_916116.1| putative GTP-binding
protein [Oryza sativa (japonica cultivar-group)]
gi|14209558|dbj|BAB56054.1| GTP-binding protein GTP1
[Oryza sativa (japonica cultivar-group)]
Length = 221
Score = 140 bits (352), Expect = 1e-32
Identities = 71/97 (73%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGK +AE ESLYFMETSAL+ATNVENAF EVL+QIY+ VSKK
Sbjct: 127 MLVGNKSDLRHLVAVSTEDGKEYAEAESLYFMETSALDATNVENAFAEVLTQIYQTVSKK 186
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEA + GS++ P G+ INVK+D S LKR GCCSN
Sbjct: 187 TVEASDDGSNA--PIKGEKINVKDDVSALKRIGCCSN 221
>gb|AAP21214.1| At1g16920 [Arabidopsis thaliana] gi|15219955|ref|NP_173136.1|
Ras-related GTP-binding protein, putative [Arabidopsis
thaliana] gi|2118459|pir||S59942 GTP-binding protein
Rab11 - Arabidopsis thaliana gi|9802771|gb|AAF99840.1|
GTP-binding protein Rab11 [Arabidopsis thaliana]
gi|3024526|sp|Q39222|RB1B_ARATH Ras-related protein
Rab11 gi|451860|gb|AAA32872.1| small GTP-binding protein
Length = 216
Score = 139 bits (351), Expect = 1e-32
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHL+AVPTEDGKS+AE+ESL FMETSALEATNVE+AF EVL+QIYRI SKK
Sbjct: 122 MLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEAGE G ++SVP G+ I VK D S LK+ GCCSN
Sbjct: 182 QVEAGEDG-NASVPK-GEKIEVKNDVSALKKLGCCSN 216
>ref|XP_475714.1| putative GTP-binding protein RIC2 [Oryza sativa (japonica
cultivar-group)] gi|46575955|gb|AAT01316.1| putative
GTP-binding protein RIC2 [Oryza sativa (japonica
cultivar-group)]
Length = 220
Score = 139 bits (351), Expect = 1e-32
Identities = 71/97 (73%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
MLIGNKSDLRHLVAV TEDGK FAE ES+YFMETSAL+ATNV+NAF EVL+QIY+IV+KK
Sbjct: 126 MLIGNKSDLRHLVAVSTEDGKEFAEAESMYFMETSALDATNVDNAFAEVLTQIYQIVNKK 185
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEA E GS+ P G+ INVK+D S +KR GCCSN
Sbjct: 186 PVEAPEDGSAG--PGKGEKINVKDDVSAMKRVGCCSN 220
>gb|AAM63927.1| guanine nucleotide regulatory protein, putative [Arabidopsis
thaliana]
Length = 216
Score = 139 bits (351), Expect = 1e-32
Identities = 73/97 (75%), Positives = 83/97 (85%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHL+AVPTEDGKS+AE+ESL FMETSALEATNVE+AF EVL+QIYRI SKK
Sbjct: 122 MLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
VEAGE G ++SVP G+ I VK D S LK+ GCCSN
Sbjct: 182 QVEAGEDG-NASVPK-GEKIEVKNDVSALKKLGCCSN 216
>gb|AAT64023.1| putative GTP-binding protein [Gossypium hirsutum]
Length = 218
Score = 139 bits (350), Expect = 2e-32
Identities = 67/97 (69%), Positives = 84/97 (86%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TEDGKSFAE+ESLYFMETSALEATNVE +F EVL+QIY ++SKK
Sbjct: 122 MLVGNKSDLRHLVAVSTEDGKSFAEKESLYFMETSALEATNVEISFAEVLTQIYNVISKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
A+E + G++S+VPS G+ I+V +D S +K+ GCCS+
Sbjct: 182 AMETSDDGAASAVPSKGEKIDVGKDVSAMKKGGCCSS 218
>dbj|BAA02904.1| ras-related GTP binding protein [Oryza sativa]
gi|730512|sp|P40393|RIC2_ORYSA Ras-related protein RIC2
gi|481506|pir||S38741 GTP-binding protein ric2 - rice
Length = 217
Score = 137 bits (346), Expect = 5e-32
Identities = 68/96 (70%), Positives = 82/96 (84%), Gaps = 2/96 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV T++GK+FAERESLYFMETSALE+TNVENAF EVL+QIYRIVSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
+VEAG+ S P G+ IN+K+D S +K+ GCCS
Sbjct: 183 SVEAGDDAGSG--PGKGEKINIKDDVSAVKKGGCCS 216
>gb|AAK15703.1| GTP-binding protein [Oryza sativa] gi|53792703|dbj|BAD53715.1|
GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 217
Score = 137 bits (346), Expect = 5e-32
Identities = 68/96 (70%), Positives = 82/96 (84%), Gaps = 2/96 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV T++GK+FAERESLYFMETSALE+TNVENAF EVL+QIYRIVSK+
Sbjct: 123 MLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKR 182
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCS 96
+VEAG+ S P G+ IN+K+D S +K+ GCCS
Sbjct: 183 SVEAGDDAGSG--PGKGEKINIKDDVSAVKKGGCCS 216
>emb|CAB78882.1| ras-like GTP-binding protein [Arabidopsis thaliana]
gi|4539399|emb|CAB37465.1| ras-like GTP-binding protein
[Arabidopsis thaliana] gi|28827250|gb|AAO50469.1|
putative ras-related GTP binding protein [Arabidopsis
thaliana] gi|28393029|gb|AAO41949.1| putative
ras-related GTP binding protein [Arabidopsis thaliana]
gi|15234020|ref|NP_193615.1| Ras-related GTP-binding
family protein [Arabidopsis thaliana]
gi|7438436|pir||T04872 GTP-binding protein F28A21.210 -
Arabidopsis thaliana
Length = 214
Score = 135 bits (339), Expect = 3e-31
Identities = 71/97 (73%), Positives = 82/97 (84%), Gaps = 4/97 (4%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TED KSFAE ESLYFMETSALE+TNVENAF+EVL+QIY +VSKK
Sbjct: 122 MLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
A+EAGE S +VPS G+ I+V D S +K+ GCCSN
Sbjct: 182 AMEAGE--DSGNVPSKGEKIDV--DVSAVKKTGCCSN 214
>gb|AAL15217.1| putative Rab-type small GTP-binding protein [Arabidopsis thaliana]
gi|13877913|gb|AAK44034.1| putative Rab-type small
GTP-binding protein [Arabidopsis thaliana]
gi|9758678|dbj|BAB09217.1| Rab-type small GTP-binding
protein-like [Arabidopsis thaliana]
gi|15242483|ref|NP_199387.1| Ras-related GTP-binding
protein, putative [Arabidopsis thaliana]
Length = 216
Score = 134 bits (337), Expect = 6e-31
Identities = 69/97 (71%), Positives = 81/97 (83%), Gaps = 2/97 (2%)
Query: 1 MLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLSQIYRIVSKK 60
ML+GNKSDLRHLVAV TED KSFAE+ESLYFMETSALEATNVENAF EVL+QI+ IVSKK
Sbjct: 122 MLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKK 181
Query: 61 AVEAGEGGSSSSVPSVGQTINVKEDSSVLKRFGCCSN 97
A+EA S++VPS G I++ +D S +K+ GCCSN
Sbjct: 182 AMEA--ASESANVPSKGDKIDIGKDVSAVKKGGCCSN 216
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,378,449
Number of Sequences: 2540612
Number of extensions: 4205555
Number of successful extensions: 12425
Number of sequences better than 10.0: 2068
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 10587
Number of HSP's gapped (non-prelim): 2069
length of query: 97
length of database: 863,360,394
effective HSP length: 73
effective length of query: 24
effective length of database: 677,895,718
effective search space: 16269497232
effective search space used: 16269497232
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC143337.8