BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142224.5 - phase: 0 /pseudo
(625 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 265 4e-69
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 258 4e-67
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 243 1e-62
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 243 1e-62
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 239 2e-61
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 238 3e-61
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 238 4e-61
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 238 4e-61
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 237 1e-60
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 234 8e-60
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 228 3e-58
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 228 6e-58
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 228 6e-58
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 226 2e-57
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 224 8e-57
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 224 8e-57
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 224 8e-57
gb|AAD15377.1| putative non-LTR retroelement reverse transcripta... 220 9e-56
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 217 8e-55
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 216 2e-54
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 265 bits (676), Expect = 4e-69
Identities = 141/337 (41%), Positives = 196/337 (57%), Gaps = 14/337 (4%)
Query: 246 KPIVSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHK 305
K + G P + DT + LI K+ P+ +K L P+SLCNV+YKI SKVLANRLK +L +
Sbjct: 929 KDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYKIASKVLANRLKPLLSE 988
Query: 306 CISDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQA 365
IS Q AFVP R I +N L +E+ H++K K +G G A+KQ +SKA+DR++W +L+
Sbjct: 989 IISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVKQGMSKAYDRVEWGFLEK 1048
Query: 366 VMEKK-WDSQMFGLTGSCNV*-------------PIDPHCGIRQGGPFSPYLYIICSEGL 411
+M K +D + C I+P G+RQG P SPYL+ IC+EG
Sbjct: 1049 MMLKLGFDRNWVFIVMKCVTSVTYRIKVNGEFTEQINPTGGLRQGDPISPYLFFICAEGF 1108
Query: 412 NSYIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASG 471
++ + E G + ++C+ +PSI LLFADDS L K L+N+L YE SG
Sbjct: 1109 STLLNAAEERGDLSVIKVCQNAPSINHLLFADDSLLLLKTDEGSAACLQNVLSLYERCSG 1168
Query: 472 QAINYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKER 531
+ IN KSSI FSRN + L + W+ KYLGLP + R K S++KER
Sbjct: 1169 ETINKEKSSIMFSRNIKEVNKQIFMGALDIGVGAWNEKYLGLPVYMGRSKAKTSSYLKER 1228
Query: 532 IWKNIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
+WK IQ W LSRAGK+VL+K++AQ IP ++ + F
Sbjct: 1229 VWKKIQGWKEKLLSRAGKDVLIKAVAQAIPAFAMSCF 1265
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 258 bits (659), Expect = 4e-67
Identities = 135/335 (40%), Positives = 201/335 (59%), Gaps = 14/335 (4%)
Query: 248 IVSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCI 307
+++ G P DT + LI K +P ++K L P+SLCNV YK++SKV+ NRLK +L + I
Sbjct: 822 VLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPISLCNVAYKLISKVIVNRLKVVLLEII 881
Query: 308 SDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVM 367
S SQ+AFVP R I N L +E+ HY+ + KGK G A+K D+SKA+DR++W +L+ +M
Sbjct: 882 SPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSKAYDRVEWDFLRHMM 941
Query: 368 EKK-WDSQMFGLTGSC-------------NV*PIDPHCGIRQGGPFSPYLYIICSEGLNS 413
+ + Q L C + I P G+RQG P SPYL+IIC+EGL++
Sbjct: 942 LRLGFHDQWVNLVMKCVTSVTYRIKINGEHSDQIYPQRGLRQGDPLSPYLFIICAEGLSA 1001
Query: 414 YIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQA 473
++ + G I G ++CR +P I L FADDS + +A ++ L+ +L YE ASGQ
Sbjct: 1002 LLQKAQADGKIEGIKVCRDTPRINHLFFADDSLVLMRAGQNDAQELRRVLNIYEVASGQV 1061
Query: 474 INYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIW 533
IN KSS+ FS NT + L + + + +YLGLP + + ++ F +IK ++W
Sbjct: 1062 INKDKSSVLFSPNTLQSDRMEVRSALCINQEAKNERYLGLPVSIGKSRRKAFEYIKRKVW 1121
Query: 534 KNIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
IQ W LS+AGKE+L+K++AQ IPTY+ + F
Sbjct: 1122 LRIQGWQEKLLSKAGKEILVKAVAQAIPTYAMSCF 1156
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 243 bits (621), Expect = 1e-62
Identities = 133/327 (40%), Positives = 189/327 (57%), Gaps = 15/327 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TNI +I KI P+++ P++LCNV+YKI+SK L RLK L +SDSQAAF+P R +
Sbjct: 849 TNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLV 908
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KKWDSQM 375
+N + E++H +K + + + +A+K DVSKA+DR++W++L+ M + W +
Sbjct: 909 NDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWI 968
Query: 376 FGLTGSCNV*---------PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
G S N I P GIRQG P SPYL+I+C++ LN IK+ G I G
Sbjct: 969 MGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRG 1028
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
RI G P +T L FADDS F ++ V LK++ YE SGQ IN KS I F
Sbjct: 1029 IRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSR 1088
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ + ++LG+ GKYLGLP R K+ +F++I ER+ K +WSA LS
Sbjct: 1089 VHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSP 1148
Query: 547 AGKEVLLKSIAQYIPTYSWAIFCSLPL 573
AGKE++LKS+A +P Y+ + F LPL
Sbjct: 1149 AGKEIMLKSVAMSMPVYAMSCF-KLPL 1174
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 243 bits (621), Expect = 1e-62
Identities = 133/327 (40%), Positives = 189/327 (57%), Gaps = 15/327 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TNI +I KI P+++ P++LCNV+YKI+SK L RLK L +SDSQAAF+P R +
Sbjct: 869 TNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHLDAIVSDSQAAFIPGRLV 928
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KKWDSQM 375
+N + E++H +K + + + +A+K DVSKA+DR++W++L+ M + W +
Sbjct: 929 NDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWI 988
Query: 376 FGLTGSCNV*---------PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
G S N I P GIRQG P SPYL+I+C++ LN IK+ G I G
Sbjct: 989 MGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRG 1048
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
RI G P +T L FADDS F ++ V LK++ YE SGQ IN KS I F
Sbjct: 1049 IRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINMSKSMITFGSR 1108
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ + ++LG+ GKYLGLP R K+ +F++I ER+ K +WSA LS
Sbjct: 1109 VHGTTQNRLKNILGIQSHGGGGKYLGLPEQFGRKKRDMFNYIIERVKKRTSSWSAKYLSP 1168
Query: 547 AGKEVLLKSIAQYIPTYSWAIFCSLPL 573
AGKE++LKS+A +P Y+ + F LPL
Sbjct: 1169 AGKEIMLKSVAMSMPVYAMSCF-KLPL 1194
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 239 bits (610), Expect = 2e-61
Identities = 134/334 (40%), Positives = 196/334 (58%), Gaps = 14/334 (4%)
Query: 249 VSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCIS 308
+ EG F L TNI LI K +RP M L P+SLCNV YK++SK+L RLK +L IS
Sbjct: 259 LQEGVFDKRLNTTNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLIS 318
Query: 309 DSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME 368
++Q+AFV R I +N L E+ H ++ + K+ +A+K D+SKA+D+++W++++A++
Sbjct: 319 ETQSAFVDGRLISDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLR 378
Query: 369 K-----KWDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSY 414
K KW S + + N P I P G+RQG P SPYL+I+C+E L +
Sbjct: 379 KMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIAN 438
Query: 415 IKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAI 474
I+ E LI G ++ SP+++ LLFADDS F KA + I+ IL YE+ SGQ I
Sbjct: 439 IRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQI 498
Query: 475 NYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWK 534
N+ KSSI F + +I +LG+ G YLGLP + K +FSF+++R+
Sbjct: 499 NFSKSSIQFGHKVEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQS 558
Query: 535 NIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
I WSA LS+ GKEV++KS+A +P Y + F
Sbjct: 559 RINGWSAKFLSKGGKEVMIKSVAATLPRYVMSCF 592
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 238 bits (608), Expect = 3e-61
Identities = 126/293 (43%), Positives = 177/293 (60%), Gaps = 14/293 (4%)
Query: 290 ILSKVLANRLKQILHKCISDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQ 349
++ KVLANRLK+IL IS +Q+AFVP R I +N L +E+ HYM+ K G+ G A K
Sbjct: 717 LIPKVLANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKL 776
Query: 350 DVSKAFDRIKWSYLQAVMEK-----KWDSQMFGLTGSCNV*---------PIDPHCGIRQ 395
D+SKA+DR++WS+L +M K W + + + P G+RQ
Sbjct: 777 DMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQ 836
Query: 396 GGPFSPYLYIICSEGLNSYIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSE 455
G P SPYL+++C+EG ++ + E G +HG RIC+G+PS++ LLFADDS + +A E
Sbjct: 837 GDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGE 896
Query: 456 DTILKNILYTYEAASGQAINYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPS 515
L+ IL YE SGQ IN KS++ FS NT S+ + L + + KYLGLP
Sbjct: 897 AQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPV 956
Query: 516 MVERDKKSIFSFIKERIWKNIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
V R + IFS++KERIW+ IQ W LSRAGKE+L+K++AQ IPT++ F
Sbjct: 957 FVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCF 1009
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 238 bits (607), Expect = 4e-61
Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 14/327 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P++ TNI +I KI P ++ P++LCNV+YK++SK L NRLK L+ +SDSQAAF+
Sbjct: 864 PSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFI 923
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KK 370
P R I +N + EV+H +K + + + +A+K DVSKA+DR++W +L+ M K
Sbjct: 924 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 983
Query: 371 WDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENT 421
W + S N P I P GIRQG P SPYL+I+C + L+ I ++
Sbjct: 984 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 1043
Query: 422 GLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSI 481
G + G RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I
Sbjct: 1044 GDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 1103
Query: 482 AFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSA 541
F + +L + GKYLGLP R KK +F +I +R+ K WSA
Sbjct: 1104 TFGSRVYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSA 1163
Query: 542 WSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGKE++LKS+A +P Y+ + F
Sbjct: 1164 RFLSPAGKEIMLKSVALAMPVYAMSCF 1190
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 238 bits (607), Expect = 4e-61
Identities = 132/327 (40%), Positives = 186/327 (56%), Gaps = 14/327 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P++ TNI +I KI P ++ P++LCNV+YK++SK L NRLK L+ +SDSQAAF+
Sbjct: 638 PSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFI 697
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KK 370
P R I +N + EV+H +K + + + +A+K DVSKA+DR++W +L+ M K
Sbjct: 698 PGRIINDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNK 757
Query: 371 WDSQMFGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENT 421
W + S N P I P GIRQG P SPYL+I+C + L+ I ++
Sbjct: 758 WIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASS 817
Query: 422 GLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSI 481
G + G RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I
Sbjct: 818 GDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMI 877
Query: 482 AFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSA 541
F + +L + GKYLGLP R KK +F +I +R+ K WSA
Sbjct: 878 TFGSRVYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSA 937
Query: 542 WSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGKE++LKS+A +P Y+ + F
Sbjct: 938 RFLSPAGKEIMLKSVALAMPVYAMSCF 964
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 237 bits (604), Expect = 1e-60
Identities = 132/322 (40%), Positives = 187/322 (57%), Gaps = 14/322 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
TNI +I KI P+++ P++LCNV+YK++SK + NRLK L+ +SDSQAAF+P R I
Sbjct: 108 TNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME-----KKWDSQM 375
+N + E++H +K + + + +A+K DVSKA+DR++W +L+ M KW +
Sbjct: 168 NDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWI 227
Query: 376 FGLTGSC------NV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
S N P I P GIRQG P SPYL+I+C + L+ IK ++G I G
Sbjct: 228 MAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRG 287
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
RI G+P+IT L FADDS F +A V LK++ YE SGQ IN +KS I F
Sbjct: 288 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSR 347
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
+ LL + GKYLGLP R KK +F++I +R+ + +WSA LS
Sbjct: 348 VYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSP 407
Query: 547 AGKEVLLKSIAQYIPTYSWAIF 568
AGKE+LLKS+A +P Y+ + F
Sbjct: 408 AGKEILLKSVALAMPVYAMSCF 429
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 234 bits (596), Expect = 8e-60
Identities = 139/355 (39%), Positives = 198/355 (55%), Gaps = 16/355 (4%)
Query: 228 YNKPFKLLLTKALIKLL*KPIVSEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVI 287
+ KP+ + L L + +G F L TNI LI K +RP M L P+SLCNV
Sbjct: 306 FQKPWATIKMDMLF--LVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCNVG 363
Query: 288 YKILSKVLANRLKQILHKCISDSQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIAL 347
YKI+SK+L RLK+IL IS++ +AFV R I +N L E+ H ++ K +A+
Sbjct: 364 YKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGKFMAI 423
Query: 348 KQDVSKAFDRIKWSYLQAVMEK-----KWDSQMFGLTGSC------NV*P---IDPHCGI 393
K D+SKA+DR++W++++ +++K KW S + + N P I P G+
Sbjct: 424 KTDMSKAYDRVEWNFIEELLKKMGFCEKWISWIMWCITTVQYRVLLNGQPRGLIVPKRGL 483
Query: 394 RQGGPFSPYLYIICSEGLNSYIKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYV 453
RQG P SPYL+I+C+E L + I+ E LI G ++ SPS++ LLFA+DS F KA
Sbjct: 484 RQGDPLSPYLFILCTEVLIANIRKAEQEKLITGIKVATASPSVSHLLFANDSLFFCKANK 543
Query: 454 SEDTILKNILYTYEAASGQAINYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGL 513
+ ++ IL YEA SGQ IN+ KSSI F I LG+ G YLGL
Sbjct: 544 EQCGVILGILKQYEAVSGQMINFSKSSIQFGHKVGDDIKAEIKSALGIHSIGGMGSYLGL 603
Query: 514 PSMVERDKKSIFSFIKERIWKNIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
P + K IFSF+++R+ I WSA LS+ GKEV++KS+ +PTY + F
Sbjct: 604 PESLGGSKTRIFSFVRDRLQTRINGWSAKFLSKGGKEVMIKSVVAVLPTYVMSCF 658
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 228 bits (582), Expect = 3e-58
Identities = 130/328 (39%), Positives = 180/328 (54%), Gaps = 15/328 (4%)
Query: 255 PPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAF 314
P L D+ + LI K++ + P+SLCNV+YKI SKVLANRLK L +S+ Q+AF
Sbjct: 497 PEGLCDSVVVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAF 556
Query: 315 VPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK----- 369
VP R I ++AL +E LH ++ K K ALK D+ KA+DR++W+YL + K
Sbjct: 557 VPGRLITDSALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQ 615
Query: 370 KWDSQMFGLTGSCN---------V*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHEN 420
W + + S P+ P GIRQG P SPYL+++C+EGL+ + E
Sbjct: 616 DWINTVMRCVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEV 675
Query: 421 TGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSS 480
G + G + R P I+ LLFADDS F KA LKN L +Y +ASGQ IN KSS
Sbjct: 676 AGELQGIKNGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSS 735
Query: 481 IAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWS 540
I F + ++ L V + YLG+P+ + + F F+ ERIWK + W+
Sbjct: 736 IFFGKRCPDAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWT 795
Query: 541 AWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LSRAG E +LK++AQ IP Y + F
Sbjct: 796 DRPLSRAGMETMLKAVAQAIPNYVMSCF 823
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 228 bits (580), Expect = 6e-58
Identities = 129/331 (38%), Positives = 191/331 (56%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G + + DT I +I K + P MK PVSLCNVIYK+++K L NRL+ +L + IS++Q
Sbjct: 466 GEWKEGMNDTVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQ 525
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-- 369
+AFVP R I +NAL FE H + T+ + ALK D+SKA+DR+ W +L ++K
Sbjct: 526 SAFVPGRMITDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLG 585
Query: 370 ------KW-----DSQMFGLTGSCNV*-PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
KW S + + + N+ P P G+R+G P +PYL++ ++GL++ ++
Sbjct: 586 FGNIWRKWIMSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQR 645
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
+ I ++CR +P ++ LLFADDS LF+KA V + T +K L YE +GQ IN +
Sbjct: 646 RRDERQIQPLKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPK 705
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
+ S+ FS I +L V + + K LGLP+ R K F IKER K +
Sbjct: 706 ECSLLFSALCPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLT 765
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
+WS LS AGKE L+KS+AQ +PTY+ +F
Sbjct: 766 DWSERFLSLAGKEALIKSVAQALPTYTMGVF 796
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 228 bits (580), Expect = 6e-58
Identities = 132/328 (40%), Positives = 189/328 (57%), Gaps = 16/328 (4%)
Query: 256 PNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFV 315
P L +T++ LI KI P+ + P++LCNV YKI++K+L RL+ L + IS Q+AFV
Sbjct: 423 PRLNETHVTLIPKISAPRKVSDYRPIALCNVQYKIVAKILTRRLQPWLSELISLHQSAFV 482
Query: 316 PSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----K 370
P R I +N L E+LH+++ K ++A+K D+SKA+DRIKW++LQ V+ + K
Sbjct: 483 PGRAIADNVLITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDK 542
Query: 371 W----------DSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHEN 420
W S F + GS + P G+RQG P SPYL+I+C+E L+ + +
Sbjct: 543 WIRWVMQCVCTVSYSFLINGSPQG-SVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQE 601
Query: 421 TGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSS 480
G++ G R+ RGSP + LLFADD+ F K + L NIL YE ASGQ+IN KS+
Sbjct: 602 KGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALSNILKKYELASGQSINLAKSA 661
Query: 481 IAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWS 540
I FS T + L + GKYLGLP R K+ IFS I +RI + +WS
Sbjct: 662 ITFSSKTPQDIKRRVKLSLRIDNEGGIGKYLGLPEHFGRRKRDIFSSIVDRIRQRSHSWS 721
Query: 541 AWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
LS AGK++LLK++ +P+Y+ F
Sbjct: 722 IRFLSSAGKQILLKAVLSSMPSYAMMCF 749
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 226 bits (575), Expect = 2e-57
Identities = 130/322 (40%), Positives = 183/322 (56%), Gaps = 14/322 (4%)
Query: 261 TNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRFI 320
T I LI KI PK M P+SLC YKI+SK+L RLKQ L ISDSQAAFVP + I
Sbjct: 849 TQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNI 908
Query: 321 LENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK-----KWDSQM 375
+N L E+LH +K + + + G +A+K D+SKA+DR++W++L+ VM + +W +
Sbjct: 909 SDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWI 968
Query: 376 FGLTGSCNV*---------PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHG 426
S + I P GIRQG P SPYL++ C+E L++ ++ E IHG
Sbjct: 969 MTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHG 1028
Query: 427 TRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRN 486
+I + +I+ LLFADDS F +A L I YE ASGQ INY KSSI F +
Sbjct: 1029 MKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQK 1088
Query: 487 TDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSR 546
++ + LLG+ GKYLGLP + R K +F +I ++ + + W+ LS
Sbjct: 1089 IPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSP 1148
Query: 547 AGKEVLLKSIAQYIPTYSWAIF 568
AGKE+++K+IA +P YS F
Sbjct: 1149 AGKEIVIKAIAMALPVYSMNCF 1170
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 224 bits (570), Expect = 8e-57
Identities = 129/331 (38%), Positives = 183/331 (54%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
GS + TNI LI KI + + M P+SLCNVIYK++ K++ANRLK+IL IS++Q
Sbjct: 478 GSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQ 537
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVME--- 368
AAFV R I +N L E+LH + K E IA+K D+SKA+DR++W +L+ M
Sbjct: 538 AAFVKGRLISDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLG 597
Query: 369 --KKWDSQMFGLTGS------CNV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
W + S N P I P G+RQG P SPYL++IC+E L ++
Sbjct: 598 FADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQS 657
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
E I G ++ RG+P I+ LLFADDS + K + I+ Y ASGQ +NY
Sbjct: 658 AEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYL 717
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KSSI F ++ + LG+ G YLGLP + K + S++K+R+ K +
Sbjct: 718 KSSIYFGKHISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVL 777
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W + LS GKE+LLK++A +PTY+ + F
Sbjct: 778 GWQSNFLSPGGKEILLKAVAMALPTYTMSCF 808
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 224 bits (570), Expect = 8e-57
Identities = 122/333 (36%), Positives = 187/333 (55%), Gaps = 15/333 (4%)
Query: 250 SEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISD 309
S G+ P + +T I LI K ++P+ +K P+SLCNV+YKI+SK L NRL+ IL +S
Sbjct: 1090 SLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQ 1149
Query: 310 SQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK 369
+Q+AFVP R I +NAL FE H+++ + A K D+SKA+DR+ W +L+ M K
Sbjct: 1150 NQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVK 1209
Query: 370 --------KWDSQMFGLT------GSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYI 415
KW L + P G+RQG P SP+L++ ++GL+ +
Sbjct: 1210 LGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLL 1269
Query: 416 KHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAIN 475
+ + G ++ ICR +P++ LLFADD+ LF+KA + ++K +L TY + +GQ IN
Sbjct: 1270 EEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLIN 1329
Query: 476 YRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKN 535
K SI F +++ + + I L + S + KYLG P+ R K F ++ER+WK
Sbjct: 1330 PSKCSIMFGQSSPTAVQNQIKQTLQISNS-FEDKYLGFPTPEGRMTKGKFQSLQERLWKR 1388
Query: 536 IQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
I W LS GKE+L+K++ Q +P Y +F
Sbjct: 1389 IMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1421
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 224 bits (570), Expect = 8e-57
Identities = 122/333 (36%), Positives = 187/333 (55%), Gaps = 15/333 (4%)
Query: 250 SEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISD 309
S G+ P + +T I LI K ++P+ +K P+SLCNV+YKI+SK L NRL+ IL +S
Sbjct: 1047 SLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQ 1106
Query: 310 SQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK 369
+Q+AFVP R I +NAL FE H+++ + A K D+SKA+DR+ W +L+ M K
Sbjct: 1107 NQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVK 1166
Query: 370 --------KWDSQMFGLT------GSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYI 415
KW L + P G+RQG P SP+L++ ++GL+ +
Sbjct: 1167 LGFAHCWVKWIMACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLL 1226
Query: 416 KHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAIN 475
+ + G ++ ICR +P++ LLFADD+ LF+KA + ++K +L TY + +GQ IN
Sbjct: 1227 EEKVDQGAMNPIHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLIN 1286
Query: 476 YRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKN 535
K SI F +++ + + I L + S + KYLG P+ R K F ++ER+WK
Sbjct: 1287 PSKCSIMFGQSSPTAVQNQIKQTLQISNS-FEDKYLGFPTPEGRMTKGKFQSLQERLWKR 1345
Query: 536 IQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
I W LS GKE+L+K++ Q +P Y +F
Sbjct: 1346 IMLWGEKFLSTGGKEILIKAVLQAMPVYVMGLF 1378
>gb|AAD15377.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411392|pir||B84497 hypothetical protein
At2g11240 [imported] - Arabidopsis thaliana
Length = 1044
Score = 220 bits (561), Expect = 9e-56
Identities = 131/334 (39%), Positives = 188/334 (56%), Gaps = 16/334 (4%)
Query: 250 SEGSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISD 309
S + P + T+I LI KI K M P++LC V YKI+SK+L+ RL+ IL + IS+
Sbjct: 302 SSSTLQPTINKTHITLIPKIQSLKRMVDYRPIALCTVFYKIISKLLSRRLQPILQEIISE 361
Query: 310 SQAAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEK 369
+Q+AFVP R +N L E LHY+K K +A+K ++SKA+DRI+W +++ VM++
Sbjct: 362 NQSAFVPKRASNDNVLITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQE 421
Query: 370 --------KW-------DSQMFGLTGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSY 414
W S F L GS + P G+RQG P SP+L+IICSE L+
Sbjct: 422 MGFHQTWISWILQCITTVSYSFLLNGSAQG-AVTPERGLRQGDPLSPFLFIICSEVLSGL 480
Query: 415 IKHHENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAI 474
+ + G + G R+ +G+P + LLFADD+ F ++ + IL YE ASGQ I
Sbjct: 481 CRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEASGQMI 540
Query: 475 NYRKSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWK 534
N KS+I FSR T +LG+ GKYLGLP M R K+ +F+ I +RI +
Sbjct: 541 NKSKSAITFSRKTPDHIKTEAQQILGIQLVGGLGKYLGLPKMFGRKKRDLFNQIVDRIRQ 600
Query: 535 NIQNWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
+WS+ LS AGK +LKS+ +PTY+ + F
Sbjct: 601 RSLSWSSRFLSTAGKTTMLKSVLASMPTYTMSCF 634
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 217 bits (553), Expect = 8e-55
Identities = 121/310 (39%), Positives = 176/310 (56%), Gaps = 7/310 (2%)
Query: 260 DTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQAAFVPSRF 319
DT I LI KI++P+ ++ P+SLCNVIYK+LSK L NRL+ L + IS +Q+AFVP R
Sbjct: 874 DTAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRM 933
Query: 320 ILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVMEKKWDSQMF-GL 378
I +NAL FE H+++ + A K D+SKA+DR+ W +L+ M K S +
Sbjct: 934 ITDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSW 993
Query: 379 TGSCNV*PIDPHCGIRQGGPFSPYLYIICSEGLNSYIKHHENTGLIHGTRICRGSPSITQ 438
+C I C +G P+L++ ++GL+ ++ G I R+C +P I+
Sbjct: 994 VMTC----ISTVCD--KGTRCDPFLFLFVADGLSLLLEEKVEQGAISPIRVCHQAPGISH 1047
Query: 439 LLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYRKSSIAFSRNTDSIGHHNITHL 498
LLFADD+ LF+KA +S+ +K + +Y ++GQ IN K SI F + IT+
Sbjct: 1048 LLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNSLPIASRDAITNC 1107
Query: 499 LGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQNWSAWSLSRAGKEVLLKSIAQ 558
L + + + KYLGLP+ R K F ++ERIWK I W LS GKEVL+K++ Q
Sbjct: 1108 LQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSSGGKEVLIKAVIQ 1167
Query: 559 YIPTYSWAIF 568
IP Y IF
Sbjct: 1168 AIPVYVMGIF 1177
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 216 bits (549), Expect = 2e-54
Identities = 130/331 (39%), Positives = 180/331 (54%), Gaps = 14/331 (4%)
Query: 252 GSFPPNLIDTNIALIAKIDRPKSMKHLCPVSLCNVIYKILSKVLANRLKQILHKCISDSQ 311
G P + T+I LI KI P+ M L P+SLC+V+YKI+SK+L RLK+ L +S +Q
Sbjct: 456 GVLPQDWNHTHICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQ 515
Query: 312 AAFVPSRFILENALTYFEVLHYMKCKTKGKEGNIALKQDVSKAFDRIKWSYLQAVM---- 367
+AFVP R I +N L E++H ++ + + ++A K D+SKA+DR++W +L+ +M
Sbjct: 516 SAFVPQRLISDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALG 575
Query: 368 -EKKWDSQMFGLTGS------CNV*P---IDPHCGIRQGGPFSPYLYIICSEGLNSYIKH 417
KW S + S N P I P GIRQG P SP L+++C+E L +
Sbjct: 576 FNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNK 635
Query: 418 HENTGLIHGTRICRGSPSITQLLFADDSFLFYKAYVSEDTILKNILYTYEAASGQAINYR 477
E G I G + S+ LLFADD+ L KA E L L Y SGQ IN
Sbjct: 636 AEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLN 695
Query: 478 KSSIAFSRNTDSIGHHNITHLLGVVESMWHGKYLGLPSMVERDKKSIFSFIKERIWKNIQ 537
KS+I F +N D I G+ GKYLGLP + K+ +F FIKE++ +
Sbjct: 696 KSAITFGKNVDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLT 755
Query: 538 NWSAWSLSRAGKEVLLKSIAQYIPTYSWAIF 568
W A +LS+ GKEVLLKSIA +P Y + F
Sbjct: 756 GWYAKTLSQGGKEVLLKSIALALPVYVMSCF 786
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.342 0.149 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 971,243,525
Number of Sequences: 2540612
Number of extensions: 38050506
Number of successful extensions: 120780
Number of sequences better than 10.0: 691
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 119015
Number of HSP's gapped (non-prelim): 1037
length of query: 625
length of database: 863,360,394
effective HSP length: 134
effective length of query: 491
effective length of database: 522,918,386
effective search space: 256752927526
effective search space used: 256752927526
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 78 (34.7 bits)
Medicago: description of AC142224.5