Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC142222.6 - phase: 0 
         (123 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_175330.1| expressed protein [Arabidopsis thaliana] gi|463...    85  4e-16
dbj|BAB02214.1| unnamed protein product [Arabidopsis thaliana] g...    83  1e-15
ref|XP_467434.1| unknown protein [Oryza sativa (japonica cultiva...    64  6e-10
dbj|BAD45365.1| hypothetical protein [Oryza sativa (japonica cul...    57  8e-08
ref|NP_918803.1| B1096D03.21 [Oryza sativa (japonica cultivar-gr...    50  2e-05
dbj|BAD68489.1| hypothetical protein [Oryza sativa (japonica cul...    50  2e-05
ref|NP_917580.1| P0704D04.7 [Oryza sativa (japonica cultivar-gro...    48  5e-05
dbj|BAD53047.1| hypothetical protein [Oryza sativa (japonica cul...    48  5e-05
ref|XP_464594.1| hypothetical protein [Oryza sativa (japonica cu...    45  4e-04
gb|AAX55098.1| hypothetical protein At1g71740 [Arabidopsis thali...    45  5e-04
ref|NP_908426.1| unknown protein [Oryza sativa (japonica cultiva...    43  0.002
gb|AAM48026.1| unknown protein [Arabidopsis thaliana] gi|1825297...    39  0.029
dbj|BAD28960.1| hypothetical protein [Oryza sativa (japonica cul...    39  0.029
dbj|BAD28850.1| unknown protein [Oryza sativa (japonica cultivar...    37  0.11
ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7...    35  0.42
gb|EAK84359.1| hypothetical protein UM03254.1 [Ustilago maydis 5...    33  1.2
gb|AAB41260.1| lysine decarboxylase                                    33  1.2
ref|YP_149639.1| lysine decarboxylase [Salmonella enterica subsp...    33  1.6
ref|NP_804173.1| lysine decarboxylase [Salmonella enterica subsp...    33  1.6
gb|AAX66460.1| lysine decarboxylase 1 [Salmonella enterica subsp...    33  1.6

>ref|NP_175330.1| expressed protein [Arabidopsis thaliana] gi|46359837|gb|AAS88782.1|
           At1g49000 [Arabidopsis thaliana]
           gi|45476547|gb|AAS65939.1| At1g49000 [Arabidopsis
           thaliana] gi|7770334|gb|AAF69704.1| F27J15.21
           [Arabidopsis thaliana]
          Length = 156

 Score = 85.1 bits (209), Expect = 4e-16
 Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 44  KTKKLLSNMSNKALSQFG-KMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDI 102
           + K+L + +SNKA++    K    +K    E   G+WQ+EILMGGKCEPLDFSGVI+YD 
Sbjct: 72  RPKELFTTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDS 131

Query: 103 NGRQTGEVPLRSPRAIPFSRY 123
           NGR   EVP RSPR  P   Y
Sbjct: 132 NGRLLNEVPPRSPRGTPLPSY 152


>dbj|BAB02214.1| unnamed protein product [Arabidopsis thaliana]
           gi|15809742|gb|AAL06799.1| AT3g18560/K24M9_5
           [Arabidopsis thaliana] gi|14190489|gb|AAK55725.1|
           AT3g18560/K24M9_5 [Arabidopsis thaliana]
           gi|18401929|ref|NP_566614.1| expressed protein
           [Arabidopsis thaliana]
          Length = 195

 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 12/88 (13%)

Query: 42  KAKTKKLLSNMSNKALSQFGKMKK------TKK------QRDNELNDGVWQKEILMGGKC 89
           + + K+L + +SNKA++  G+  K      TKK        ++E   GVWQ+EILMGGKC
Sbjct: 85  RVRPKELYTTLSNKAMTMVGRKNKAYDGGPTKKTAVEMVMEEDEEEYGVWQREILMGGKC 144

Query: 90  EPLDFSGVIHYDINGRQTGEVPLRSPRA 117
           EPLD+SGVI+YD +G Q  +VP RSPRA
Sbjct: 145 EPLDYSGVIYYDCSGHQLKQVPPRSPRA 172


>ref|XP_467434.1| unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|41052652|dbj|BAD07500.1| unknown protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 138

 Score = 64.3 bits (155), Expect = 6e-10
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 5/66 (7%)

Query: 55  KALSQFGKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE----- 109
           KA+S   + +K   +      DGVW+KEILMG +C+PLDFSGVI+YD  GR+  +     
Sbjct: 56  KAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPR 115

Query: 110 VPLRSP 115
            PLRSP
Sbjct: 116 SPLRSP 121


>dbj|BAD45365.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 171

 Score = 57.4 bits (137), Expect = 8e-08
 Identities = 27/52 (51%), Positives = 37/52 (70%), Gaps = 1/52 (1%)

Query: 69  QRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE-VPLRSPRAIP 119
           +R+   + G+W+KEILMG +C+PLDFSGVI+YD +GR+     P RSP   P
Sbjct: 105 RREEGDSGGLWRKEILMGERCQPLDFSGVIYYDADGRRLAHPPPPRSPMRSP 156


>ref|NP_918803.1| B1096D03.21 [Oryza sativa (japonica cultivar-group)]
          Length = 918

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 23/55 (41%), Positives = 38/55 (68%), Gaps = 2/55 (3%)

Query: 64  KKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAI 118
           ++ +++    + DGV +KEILM  +C+ LDFSG+I+YD+ GR+  + P   PRA+
Sbjct: 847 RRRRQELSFRVEDGVCRKEILMEERCQSLDFSGMIYYDVAGRRLEQPP--PPRAL 899


>dbj|BAD68489.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 138

 Score = 49.7 bits (117), Expect = 2e-05
 Identities = 23/55 (41%), Positives = 38/55 (68%), Gaps = 2/55 (3%)

Query: 64  KKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAI 118
           ++ +++    + DGV +KEILM  +C+ LDFSG+I+YD+ GR+  + P   PRA+
Sbjct: 67  RRRRQELSFRVEDGVCRKEILMEERCQSLDFSGMIYYDVAGRRLEQPP--PPRAL 119


>ref|NP_917580.1| P0704D04.7 [Oryza sativa (japonica cultivar-group)]
          Length = 135

 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 18/34 (52%), Positives = 25/34 (72%)

Query: 76  DGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
           +G+W++ ILMG +CEPL F G IHYD  GR+  +
Sbjct: 56  EGLWRRAILMGERCEPLSFPGAIHYDSRGRRLSQ 89


>dbj|BAD53047.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 505

 Score = 48.1 bits (113), Expect = 5e-05
 Identities = 18/34 (52%), Positives = 25/34 (72%)

Query: 76  DGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
           +G+W++ ILMG +CEPL F G IHYD  GR+  +
Sbjct: 426 EGLWRRAILMGERCEPLSFPGAIHYDSRGRRLSQ 459


>ref|XP_464594.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|49387925|dbj|BAD25025.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 299

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 23/40 (57%), Positives = 26/40 (64%), Gaps = 2/40 (5%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRA 117
           VWQK ILMGGKC+  +FSGVI+YD  G      P   PRA
Sbjct: 98  VWQKNILMGGKCQLPEFSGVINYDAAGNIV--APSGRPRA 135


>gb|AAX55098.1| hypothetical protein At1g71740 [Arabidopsis thaliana]
           gi|15217551|ref|NP_177319.1| hypothetical protein
           [Arabidopsis thaliana] gi|7239501|gb|AAF43227.1|
           F14O23.12 [Arabidopsis thaliana] gi|25406118|pir||G96739
           F14O23.12 [imported] - Arabidopsis thaliana
          Length = 130

 Score = 44.7 bits (104), Expect = 5e-04
 Identities = 19/28 (67%), Positives = 23/28 (81%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGR 105
           +WQK ILMGGKC+  DFSGVI YD +G+
Sbjct: 88  LWQKNILMGGKCQLPDFSGVILYDADGQ 115


>ref|NP_908426.1| unknown protein [Oryza sativa (japonica cultivar-group)]
           gi|14587253|dbj|BAB61171.1| unknown protein [Oryza
           sativa (japonica cultivar-group)]
           gi|13486649|dbj|BAB39887.1| unknown protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 175

 Score = 43.1 bits (100), Expect = 0.002
 Identities = 18/34 (52%), Positives = 23/34 (66%)

Query: 73  ELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQ 106
           E  + +W+K I+MG KC PL FSG I YD +G Q
Sbjct: 121 EEEEALWRKTIMMGDKCRPLQFSGHIAYDSDGNQ 154


>gb|AAM48026.1| unknown protein [Arabidopsis thaliana] gi|18252977|gb|AAL62415.1|
           unknown protein [Arabidopsis thaliana]
           gi|22331082|ref|NP_188094.2| expressed protein
           [Arabidopsis thaliana]
          Length = 168

 Score = 38.9 bits (89), Expect = 0.029
 Identities = 19/34 (55%), Positives = 22/34 (63%)

Query: 68  KQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYD 101
           K+R     D VWQ+ ILMG KCE   FSG+I YD
Sbjct: 106 KERSLNAVDPVWQRPILMGEKCELPRFSGLILYD 139


>dbj|BAD28960.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 202

 Score = 38.9 bits (89), Expect = 0.029
 Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGRQ-TGEVPLRS 114
           VWQ+ ILMG +CE   FSG+I YD +GR   G  P RS
Sbjct: 138 VWQRRILMGMRCELPRFSGLILYDEHGRPIRGTTPGRS 175


>dbj|BAD28850.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 143

 Score = 37.0 bits (84), Expect = 0.11
 Identities = 15/28 (53%), Positives = 21/28 (74%)

Query: 78  VWQKEILMGGKCEPLDFSGVIHYDINGR 105
           +WQ+++LMG KC+   FSG+I YD  GR
Sbjct: 89  IWQRKVLMGVKCQLPRFSGMILYDERGR 116


>ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7]
            gi|23615755|emb|CAD52747.1| hypothetical protein
            [Plasmodium falciparum 3D7]
          Length = 2020

 Score = 35.0 bits (79), Expect = 0.42
 Identities = 23/72 (31%), Positives = 37/72 (50%), Gaps = 4/72 (5%)

Query: 33   SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQK-EILMGGKCEP 91
            ++Q ++ K   K KK+  N  NK + +  + KK K+ + N  N+ +  K EI    KC  
Sbjct: 1847 NKQNKQNKQNKKVKKIKKNKKNKKIKKNKRNKKIKRNKKNIQNNSLEDKIEIYESDKC-- 1904

Query: 92   LDFSGVIHYDIN 103
             + +GV   DIN
Sbjct: 1905 -NHNGVSKCDIN 1915


>gb|EAK84359.1| hypothetical protein UM03254.1 [Ustilago maydis 521]
            gi|49073276|ref|XP_400869.1| hypothetical protein
            UM03254.1 [Ustilago maydis 521]
          Length = 2102

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)

Query: 6    SSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKK 65
            SS  + SP   S+S FF  IS     L R +RR  G A     LS+  +K  S+F    +
Sbjct: 949  SSRHASSPSANSSSKFFSRIS-----LPRSSRR--GSAADSSPLSSPDSKPRSRFASFGR 1001

Query: 66   TKK--QRDNELNDG 77
              +   + N+LNDG
Sbjct: 1002 ISRGGSQPNQLNDG 1015


>gb|AAB41260.1| lysine decarboxylase
          Length = 715

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNA-CKRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>ref|YP_149639.1| lysine decarboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150] gi|56126821|gb|AAV76327.1|
           lysine decarboxylase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 714

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>ref|NP_804173.1| lysine decarboxylase [Salmonella enterica subsp. enterica serovar
           Typhi Ty2] gi|16503772|emb|CAD02762.1| lysine
           decarboxylase [Salmonella enterica subsp. enterica
           serovar Typhi] gi|16421105|gb|AAL21453.1| lysine
           decarboxylase 1 [Salmonella typhimurium LT2]
           gi|29136456|gb|AAO68022.1| lysine decarboxylase
           [Salmonella enterica subsp. enterica serovar Typhi Ty2]
           gi|16761472|ref|NP_457089.1| lysine decarboxylase
           [Salmonella enterica subsp. enterica serovar Typhi str.
           CT18] gi|25336653|pir||AF0826 lysine decarboxylase (EC
           4.1.1.18) [imported] - Salmonella enterica subsp.
           enterica serovar Typhi (strain CT18)
           gi|16765879|ref|NP_461494.1| lysine decarboxylase 1
           [Salmonella typhimurium LT2]
           gi|60392174|sp|P0A1Z1|DCLY_SALTI Lysine decarboxylase,
           inducible (LDC) gi|60392173|sp|P0A1Z0|DCLY_SALTY Lysine
           decarboxylase, inducible (LDC)
          Length = 714

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


>gb|AAX66460.1| lysine decarboxylase 1 [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67] gi|62181124|ref|YP_217541.1|
           lysine decarboxylase 1 [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 714

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 28  ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
           I+A     A  +KG A  K+L++    +A+    ++K+ K + D    D VWQ E + G 
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462

Query: 88  KCEPLDFSGVIH 99
           +C PL      H
Sbjct: 463 ECWPLRSDSAWH 474


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.315    0.130    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,683,385
Number of Sequences: 2540612
Number of extensions: 6874038
Number of successful extensions: 19658
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 19630
Number of HSP's gapped (non-prelim): 47
length of query: 123
length of database: 863,360,394
effective HSP length: 99
effective length of query: 24
effective length of database: 611,839,806
effective search space: 14684155344
effective search space used: 14684155344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)


Medicago: description of AC142222.6