BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142222.6 - phase: 0
(123 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175330.1| expressed protein [Arabidopsis thaliana] gi|463... 85 4e-16
dbj|BAB02214.1| unnamed protein product [Arabidopsis thaliana] g... 83 1e-15
ref|XP_467434.1| unknown protein [Oryza sativa (japonica cultiva... 64 6e-10
dbj|BAD45365.1| hypothetical protein [Oryza sativa (japonica cul... 57 8e-08
ref|NP_918803.1| B1096D03.21 [Oryza sativa (japonica cultivar-gr... 50 2e-05
dbj|BAD68489.1| hypothetical protein [Oryza sativa (japonica cul... 50 2e-05
ref|NP_917580.1| P0704D04.7 [Oryza sativa (japonica cultivar-gro... 48 5e-05
dbj|BAD53047.1| hypothetical protein [Oryza sativa (japonica cul... 48 5e-05
ref|XP_464594.1| hypothetical protein [Oryza sativa (japonica cu... 45 4e-04
gb|AAX55098.1| hypothetical protein At1g71740 [Arabidopsis thali... 45 5e-04
ref|NP_908426.1| unknown protein [Oryza sativa (japonica cultiva... 43 0.002
gb|AAM48026.1| unknown protein [Arabidopsis thaliana] gi|1825297... 39 0.029
dbj|BAD28960.1| hypothetical protein [Oryza sativa (japonica cul... 39 0.029
dbj|BAD28850.1| unknown protein [Oryza sativa (japonica cultivar... 37 0.11
ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.42
gb|EAK84359.1| hypothetical protein UM03254.1 [Ustilago maydis 5... 33 1.2
gb|AAB41260.1| lysine decarboxylase 33 1.2
ref|YP_149639.1| lysine decarboxylase [Salmonella enterica subsp... 33 1.6
ref|NP_804173.1| lysine decarboxylase [Salmonella enterica subsp... 33 1.6
gb|AAX66460.1| lysine decarboxylase 1 [Salmonella enterica subsp... 33 1.6
>ref|NP_175330.1| expressed protein [Arabidopsis thaliana] gi|46359837|gb|AAS88782.1|
At1g49000 [Arabidopsis thaliana]
gi|45476547|gb|AAS65939.1| At1g49000 [Arabidopsis
thaliana] gi|7770334|gb|AAF69704.1| F27J15.21
[Arabidopsis thaliana]
Length = 156
Score = 85.1 bits (209), Expect = 4e-16
Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 44 KTKKLLSNMSNKALSQFG-KMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDI 102
+ K+L + +SNKA++ K +K E G+WQ+EILMGGKCEPLDFSGVI+YD
Sbjct: 72 RPKELFTTLSNKAMTMVRRKNPPEEKATAMEEEHGLWQREILMGGKCEPLDFSGVIYYDS 131
Query: 103 NGRQTGEVPLRSPRAIPFSRY 123
NGR EVP RSPR P Y
Sbjct: 132 NGRLLNEVPPRSPRGTPLPSY 152
>dbj|BAB02214.1| unnamed protein product [Arabidopsis thaliana]
gi|15809742|gb|AAL06799.1| AT3g18560/K24M9_5
[Arabidopsis thaliana] gi|14190489|gb|AAK55725.1|
AT3g18560/K24M9_5 [Arabidopsis thaliana]
gi|18401929|ref|NP_566614.1| expressed protein
[Arabidopsis thaliana]
Length = 195
Score = 83.2 bits (204), Expect = 1e-15
Identities = 43/88 (48%), Positives = 58/88 (65%), Gaps = 12/88 (13%)
Query: 42 KAKTKKLLSNMSNKALSQFGKMKK------TKK------QRDNELNDGVWQKEILMGGKC 89
+ + K+L + +SNKA++ G+ K TKK ++E GVWQ+EILMGGKC
Sbjct: 85 RVRPKELYTTLSNKAMTMVGRKNKAYDGGPTKKTAVEMVMEEDEEEYGVWQREILMGGKC 144
Query: 90 EPLDFSGVIHYDINGRQTGEVPLRSPRA 117
EPLD+SGVI+YD +G Q +VP RSPRA
Sbjct: 145 EPLDYSGVIYYDCSGHQLKQVPPRSPRA 172
>ref|XP_467434.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|41052652|dbj|BAD07500.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 138
Score = 64.3 bits (155), Expect = 6e-10
Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 5/66 (7%)
Query: 55 KALSQFGKMKKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE----- 109
KA+S + +K + DGVW+KEILMG +C+PLDFSGVI+YD GR+ +
Sbjct: 56 KAISSSRRRRKAGAELSFRAEDGVWRKEILMGERCQPLDFSGVIYYDAEGRRLEQPPPPR 115
Query: 110 VPLRSP 115
PLRSP
Sbjct: 116 SPLRSP 121
>dbj|BAD45365.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 171
Score = 57.4 bits (137), Expect = 8e-08
Identities = 27/52 (51%), Positives = 37/52 (70%), Gaps = 1/52 (1%)
Query: 69 QRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE-VPLRSPRAIP 119
+R+ + G+W+KEILMG +C+PLDFSGVI+YD +GR+ P RSP P
Sbjct: 105 RREEGDSGGLWRKEILMGERCQPLDFSGVIYYDADGRRLAHPPPPRSPMRSP 156
>ref|NP_918803.1| B1096D03.21 [Oryza sativa (japonica cultivar-group)]
Length = 918
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/55 (41%), Positives = 38/55 (68%), Gaps = 2/55 (3%)
Query: 64 KKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAI 118
++ +++ + DGV +KEILM +C+ LDFSG+I+YD+ GR+ + P PRA+
Sbjct: 847 RRRRQELSFRVEDGVCRKEILMEERCQSLDFSGMIYYDVAGRRLEQPP--PPRAL 899
>dbj|BAD68489.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 138
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/55 (41%), Positives = 38/55 (68%), Gaps = 2/55 (3%)
Query: 64 KKTKKQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRAI 118
++ +++ + DGV +KEILM +C+ LDFSG+I+YD+ GR+ + P PRA+
Sbjct: 67 RRRRQELSFRVEDGVCRKEILMEERCQSLDFSGMIYYDVAGRRLEQPP--PPRAL 119
>ref|NP_917580.1| P0704D04.7 [Oryza sativa (japonica cultivar-group)]
Length = 135
Score = 48.1 bits (113), Expect = 5e-05
Identities = 18/34 (52%), Positives = 25/34 (72%)
Query: 76 DGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
+G+W++ ILMG +CEPL F G IHYD GR+ +
Sbjct: 56 EGLWRRAILMGERCEPLSFPGAIHYDSRGRRLSQ 89
>dbj|BAD53047.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 505
Score = 48.1 bits (113), Expect = 5e-05
Identities = 18/34 (52%), Positives = 25/34 (72%)
Query: 76 DGVWQKEILMGGKCEPLDFSGVIHYDINGRQTGE 109
+G+W++ ILMG +CEPL F G IHYD GR+ +
Sbjct: 426 EGLWRRAILMGERCEPLSFPGAIHYDSRGRRLSQ 459
>ref|XP_464594.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49387925|dbj|BAD25025.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 299
Score = 45.1 bits (105), Expect = 4e-04
Identities = 23/40 (57%), Positives = 26/40 (64%), Gaps = 2/40 (5%)
Query: 78 VWQKEILMGGKCEPLDFSGVIHYDINGRQTGEVPLRSPRA 117
VWQK ILMGGKC+ +FSGVI+YD G P PRA
Sbjct: 98 VWQKNILMGGKCQLPEFSGVINYDAAGNIV--APSGRPRA 135
>gb|AAX55098.1| hypothetical protein At1g71740 [Arabidopsis thaliana]
gi|15217551|ref|NP_177319.1| hypothetical protein
[Arabidopsis thaliana] gi|7239501|gb|AAF43227.1|
F14O23.12 [Arabidopsis thaliana] gi|25406118|pir||G96739
F14O23.12 [imported] - Arabidopsis thaliana
Length = 130
Score = 44.7 bits (104), Expect = 5e-04
Identities = 19/28 (67%), Positives = 23/28 (81%)
Query: 78 VWQKEILMGGKCEPLDFSGVIHYDINGR 105
+WQK ILMGGKC+ DFSGVI YD +G+
Sbjct: 88 LWQKNILMGGKCQLPDFSGVILYDADGQ 115
>ref|NP_908426.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|14587253|dbj|BAB61171.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|13486649|dbj|BAB39887.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 175
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/34 (52%), Positives = 23/34 (66%)
Query: 73 ELNDGVWQKEILMGGKCEPLDFSGVIHYDINGRQ 106
E + +W+K I+MG KC PL FSG I YD +G Q
Sbjct: 121 EEEEALWRKTIMMGDKCRPLQFSGHIAYDSDGNQ 154
>gb|AAM48026.1| unknown protein [Arabidopsis thaliana] gi|18252977|gb|AAL62415.1|
unknown protein [Arabidopsis thaliana]
gi|22331082|ref|NP_188094.2| expressed protein
[Arabidopsis thaliana]
Length = 168
Score = 38.9 bits (89), Expect = 0.029
Identities = 19/34 (55%), Positives = 22/34 (63%)
Query: 68 KQRDNELNDGVWQKEILMGGKCEPLDFSGVIHYD 101
K+R D VWQ+ ILMG KCE FSG+I YD
Sbjct: 106 KERSLNAVDPVWQRPILMGEKCELPRFSGLILYD 139
>dbj|BAD28960.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 38.9 bits (89), Expect = 0.029
Identities = 21/38 (55%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 78 VWQKEILMGGKCEPLDFSGVIHYDINGRQ-TGEVPLRS 114
VWQ+ ILMG +CE FSG+I YD +GR G P RS
Sbjct: 138 VWQRRILMGMRCELPRFSGLILYDEHGRPIRGTTPGRS 175
>dbj|BAD28850.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 143
Score = 37.0 bits (84), Expect = 0.11
Identities = 15/28 (53%), Positives = 21/28 (74%)
Query: 78 VWQKEILMGGKCEPLDFSGVIHYDINGR 105
+WQ+++LMG KC+ FSG+I YD GR
Sbjct: 89 IWQRKVLMGVKCQLPRFSGMILYDERGR 116
>ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615755|emb|CAD52747.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2020
Score = 35.0 bits (79), Expect = 0.42
Identities = 23/72 (31%), Positives = 37/72 (50%), Gaps = 4/72 (5%)
Query: 33 SRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQK-EILMGGKCEP 91
++Q ++ K K KK+ N NK + + + KK K+ + N N+ + K EI KC
Sbjct: 1847 NKQNKQNKQNKKVKKIKKNKKNKKIKKNKRNKKIKRNKKNIQNNSLEDKIEIYESDKC-- 1904
Query: 92 LDFSGVIHYDIN 103
+ +GV DIN
Sbjct: 1905 -NHNGVSKCDIN 1915
>gb|EAK84359.1| hypothetical protein UM03254.1 [Ustilago maydis 521]
gi|49073276|ref|XP_400869.1| hypothetical protein
UM03254.1 [Ustilago maydis 521]
Length = 2102
Score = 33.5 bits (75), Expect = 1.2
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 6 SSPESLSPKRQSNSSFFITISAILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKK 65
SS + SP S+S FF IS L R +RR G A LS+ +K S+F +
Sbjct: 949 SSRHASSPSANSSSKFFSRIS-----LPRSSRR--GSAADSSPLSSPDSKPRSRFASFGR 1001
Query: 66 TKK--QRDNELNDG 77
+ + N+LNDG
Sbjct: 1002 ISRGGSQPNQLNDG 1015
>gb|AAB41260.1| lysine decarboxylase
Length = 715
Score = 33.5 bits (75), Expect = 1.2
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
I+A A +KG A K+L++ +A+ ++K+ K + D D VWQ E + G
Sbjct: 405 IVASTETAAAMMKGNA-CKRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462
Query: 88 KCEPLDFSGVIH 99
+C PL H
Sbjct: 463 ECWPLRSDSAWH 474
>ref|YP_149639.1| lysine decarboxylase [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150] gi|56126821|gb|AAV76327.1|
lysine decarboxylase [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
Length = 714
Score = 33.1 bits (74), Expect = 1.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
I+A A +KG A K+L++ +A+ ++K+ K + D D VWQ E + G
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462
Query: 88 KCEPLDFSGVIH 99
+C PL H
Sbjct: 463 ECWPLRSDSAWH 474
>ref|NP_804173.1| lysine decarboxylase [Salmonella enterica subsp. enterica serovar
Typhi Ty2] gi|16503772|emb|CAD02762.1| lysine
decarboxylase [Salmonella enterica subsp. enterica
serovar Typhi] gi|16421105|gb|AAL21453.1| lysine
decarboxylase 1 [Salmonella typhimurium LT2]
gi|29136456|gb|AAO68022.1| lysine decarboxylase
[Salmonella enterica subsp. enterica serovar Typhi Ty2]
gi|16761472|ref|NP_457089.1| lysine decarboxylase
[Salmonella enterica subsp. enterica serovar Typhi str.
CT18] gi|25336653|pir||AF0826 lysine decarboxylase (EC
4.1.1.18) [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16765879|ref|NP_461494.1| lysine decarboxylase 1
[Salmonella typhimurium LT2]
gi|60392174|sp|P0A1Z1|DCLY_SALTI Lysine decarboxylase,
inducible (LDC) gi|60392173|sp|P0A1Z0|DCLY_SALTY Lysine
decarboxylase, inducible (LDC)
Length = 714
Score = 33.1 bits (74), Expect = 1.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
I+A A +KG A K+L++ +A+ ++K+ K + D D VWQ E + G
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462
Query: 88 KCEPLDFSGVIH 99
+C PL H
Sbjct: 463 ECWPLRSDSAWH 474
>gb|AAX66460.1| lysine decarboxylase 1 [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67] gi|62181124|ref|YP_217541.1|
lysine decarboxylase 1 [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
Length = 714
Score = 33.1 bits (74), Expect = 1.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 28 ILAMLSRQARRLKGKAKTKKLLSNMSNKALSQFGKMKKTKKQRDNELNDGVWQKEILMGG 87
I+A A +KG A K+L++ +A+ ++K+ K + D D VWQ E + G
Sbjct: 405 IVASTETAAAMMKGNAG-KRLINGSIERAIKFRKEIKRLKSESDGWFFD-VWQPEHIDGA 462
Query: 88 KCEPLDFSGVIH 99
+C PL H
Sbjct: 463 ECWPLRSDSAWH 474
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,683,385
Number of Sequences: 2540612
Number of extensions: 6874038
Number of successful extensions: 19658
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 19630
Number of HSP's gapped (non-prelim): 47
length of query: 123
length of database: 863,360,394
effective HSP length: 99
effective length of query: 24
effective length of database: 611,839,806
effective search space: 14684155344
effective search space used: 14684155344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC142222.6