BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC142143.6 - phase: 0 /pseudo
(175 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (j... 60 3e-08
emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultiva... 59 4e-08
gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cult... 57 2e-07
ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultiv... 56 4e-07
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 55 6e-07
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 55 6e-07
gb|AAP53939.1| putative non-LTR retroelement reverse transcripta... 55 6e-07
gb|AAY23271.1| retrotransposon protein, putative, unclassified [... 55 6e-07
gb|AAU10719.1| hypothetical protein [Oryza sativa (japonica cult... 54 2e-06
emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar... 54 2e-06
emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar... 54 2e-06
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 53 4e-06
ref|NP_912588.1| Putative non-LTR retroelement reverse transcrip... 52 5e-06
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 51 2e-05
gb|AAP53772.1| putative non-LTR retroelement reverse transcripta... 50 2e-05
gb|AAS82603.1| putative glycerol 3-phosphate permease [Zea mays] 50 2e-05
gb|AAM08777.1| Putative retroelement [Oryza sativa] 50 2e-05
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 49 5e-05
gb|AAX95621.1| hypothetical protein [Oryza sativa (japonica cult... 49 6e-05
gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cult... 49 6e-05
>ref|XP_468883.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|29126371|gb|AAO66563.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 746
Score = 59.7 bits (143), Expect = 3e-08
Identities = 27/73 (36%), Positives = 45/73 (60%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
Q G + F YLGLP+G +++ + P++DR+++RL + FL+ G R+ L FVLS +
Sbjct: 496 QSGNLPFTYLGLPVGTTKPKIIDFAPLIDRVERRLPAVTMFLNHGQRLTLVNFVLSSLPT 555
Query: 63 YALSFFKVPSGII 75
Y + K+P +I
Sbjct: 556 YYMCSLKIPKKVI 568
>emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)]
gi|50930119|ref|XP_474587.1| OSJNBa0019G23.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1140
Score = 59.3 bits (142), Expect = 4e-08
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIH 61
Q+G F YLG+PI R W+ V++R +K+LS K LS GGR+ L VLS +
Sbjct: 974 QVGNFPFRYLGIPIHCRKLRNAEWKEVVERFEKKLSSWKGKLLSLGGRLTLINSVLSSLP 1033
Query: 62 VYALSFFKVPSGIISSM 78
+Y +SF +PSG++ +
Sbjct: 1034 MYMMSFLAIPSGVLKKL 1050
>gb|AAT85026.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 352
Score = 57.4 bits (137), Expect = 2e-07
Identities = 28/74 (37%), Positives = 45/74 (59%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYA 64
G + F YLGLP+G R++ + P++DRI++RLS S FLS G R+ L V S + Y
Sbjct: 61 GSMPFTYLGLPLGTTKPRVIDFAPLVDRIERRLSANSAFLSNGDRLTLMNSVFSSLPTYY 120
Query: 65 LSFFKVPSGIISSM 78
+ ++P +I ++
Sbjct: 121 MCILQLPKSVIENI 134
>ref|XP_472472.1| OSJNBa0028I23.15 [Oryza sativa (japonica cultivar-group)]
gi|39546208|emb|CAE04633.3| OSJNBa0028I23.15 [Oryza
sativa (japonica cultivar-group)]
Length = 593
Score = 56.2 bits (134), Expect = 4e-07
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIHVY 63
G YLGLP+ W+ V +R +KRL S K LS GGR+VL VLS + +Y
Sbjct: 194 GSYTLKYLGLPMHYRKLSNKDWKEVEERFQKRLGSWKGKLLSVGGRLVLINSVLSSLAMY 253
Query: 64 ALSFFKVPSGIISSM 78
LSFF+VP GII +
Sbjct: 254 MLSFFEVPKGIIKKL 268
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/74 (40%), Positives = 47/74 (62%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + +E ++DR+KKR S S +FLS G+ ++ K V + VYA+S FK
Sbjct: 1132 YLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFK 1191
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 1192 LPKGIVSEIESLLM 1205
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/74 (40%), Positives = 47/74 (62%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + +E ++DR+KKR S S +FLS G+ ++ K V + VYA+S FK
Sbjct: 906 YLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSPAGKEIMLKSVALAMPVYAMSCFK 965
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 966 LPKGIVSEIESLLM 979
>gb|AAP53939.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534700|ref|NP_921652.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 55.5 bits (132), Expect = 6e-07
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 9 FLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSF 67
F YLG+ + W+ V +RI+K+LS KFLS GGR+VL VLS + ++ LSF
Sbjct: 1463 FKYLGIRMHHKRINNKDWQGVEERIQKKLSSWKGKFLSVGGRLVLINSVLSNLAIFMLSF 1522
Query: 68 FKVPSGIISSM 78
F++P GI+ +
Sbjct: 1523 FEIPKGILKKL 1533
>gb|AAY23271.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 885
Score = 55.5 bits (132), Expect = 6e-07
Identities = 31/75 (41%), Positives = 45/75 (59%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVY 63
G+ F YLG+PI R W+ V++ +KRLS K LS GGR+ L VLS + +Y
Sbjct: 741 GQFPFRYLGIPIHYRRLRNADWKEVVECFEKRLSSWKGKLLSTGGRLTLINSVLSSLPLY 800
Query: 64 ALSFFKVPSGIISSM 78
+SFF +P GI++ +
Sbjct: 801 MMSFFAIPIGILTKL 815
>gb|AAU10719.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 816
Score = 53.9 bits (128), Expect = 2e-06
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
++G + F YLGLP+G R++ + P++D +++RL+ S FL GGR+ L V+ I
Sbjct: 528 KIGSLPFTYLGLPLGTTRPRVVDFAPLVDIVERRLTASSIFLPQGGRLTLINSVMPSIPT 587
Query: 63 YALSFFKVPSGII------SSMKSIFIKKKK 87
Y +S ++P +I SS + I K+K
Sbjct: 588 YYMSSLQLPVTVIKAIDTASSSDRVCIPKEK 618
>emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar-group)]
gi|50923465|ref|XP_472093.1| OSJNBa0061G20.4 [Oryza
sativa (japonica cultivar-group)]
Length = 632
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
Q+G + F YLGLP+G +++ + P++DR ++RL+ + FLS+G R+ L V S +
Sbjct: 207 QLGSLPFTYLGLPLGTIKPKVIDFAPLVDRTERRLTSNAYFLSYGVRLTLVNSVFSSLPT 266
Query: 63 YALSFFKVPSGIISSM 78
Y + +P +I S+
Sbjct: 267 YYMCTLMLPKTVIDSI 282
>emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar-group)]
gi|50921821|ref|XP_471271.1| OSJNBb0043H09.5 [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 53.5 bits (127), Expect = 2e-06
Identities = 24/72 (33%), Positives = 44/72 (60%)
Query: 4 MGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVY 63
+G + F YLGLP+G +++ + P++DR+++RL + FL+ G R+ + VLS + Y
Sbjct: 616 IGSLPFTYLGLPVGTTRPKIIDFVPLIDRVERRLPAITMFLNQGQRLTMVNSVLSSLPTY 675
Query: 64 ALSFFKVPSGII 75
+ K+P +I
Sbjct: 676 YMCTLKIPKKVI 687
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 52.8 bits (125), Expect = 4e-06
Identities = 29/74 (39%), Positives = 46/74 (61%), Gaps = 1/74 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + + ++DR+K+R + S KFLS G+ +L K V + VYA+S FK
Sbjct: 371 YLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSPAGKEILLKSVALAMPVYAMSCFK 430
Query: 70 VPSGIISSMKSIFI 83
+P GI+S ++S+ +
Sbjct: 431 LPQGIVSEIESLLM 444
>ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|22748339|gb|AAN05341.1|
Putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 603
Score = 52.4 bits (124), Expect = 5e-06
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVY 63
G F YLG+P+ W+ + +R +++LS K LS GGR+VL VLS + ++
Sbjct: 197 GTYPFRYLGIPMHHKKLSNKDWQIIEERFQRKLSSWKGKCLSVGGRLVLINSVLSSLAMF 256
Query: 64 ALSFFKVPSGIISSM 78
LSFF+VP GI+ +
Sbjct: 257 MLSFFEVPKGILKKL 271
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 50.8 bits (120), Expect = 2e-05
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 11 YLGLPIGGDLSRLMFWEPVLDRIKKRLSR-CSKFLSFGGRMVLFKFVLSFIHVYALSFFK 69
YLGLP + ++ ++DR+ KRLS KFLS GG+ VL K V+ + Y ++ FK
Sbjct: 20 YLGLPTPSGRMKAGKYQYLMDRLMKRLSDWAEKFLSMGGKEVLIKSVIQALPTYVMNVFK 79
Query: 70 VPSG 73
+PSG
Sbjct: 80 LPSG 83
>gb|AAP53772.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37534366|ref|NP_921485.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 339
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIH 61
++G + F YLGLP+G P++ +I+KRL S S LS+GGR + LS +
Sbjct: 33 KVGSLPFTYLGLPMGVGKVGKRDLLPIMQKIEKRLQSWHSGHLSYGGREIRINTFLSSVP 92
Query: 62 VYALSFFKVPSGIISSMKSI 81
+YA+ FFK+P ++++I
Sbjct: 93 MYAMGFFKLPEEFHKNLETI 112
>gb|AAS82603.1| putative glycerol 3-phosphate permease [Zea mays]
Length = 1279
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHV 62
++G + F YLGLP+G +L + P++ +I+KRL+ S FLS GR+ + V S +
Sbjct: 359 KIGSLSFTYLGLPLGIQRPKLGAFLPLIQKIEKRLASTSIFLSQAGRLEMVNAVFSSLPT 418
Query: 63 YALSFFKVPSGII 75
Y + K+P +I
Sbjct: 419 YYMCTLKLPKMVI 431
>gb|AAM08777.1| Putative retroelement [Oryza sativa]
Length = 779
Score = 50.4 bits (119), Expect = 2e-05
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 3 QMGKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRL-SRCSKFLSFGGRMVLFKFVLSFIH 61
++G + F YLGLP+G P++ +I+KRL S S LS+GGR + LS +
Sbjct: 138 KVGSLPFTYLGLPMGVGKVGKRDLLPIMQKIEKRLQSWHSGHLSYGGREIRINTFLSSVP 197
Query: 62 VYALSFFKVPSGIISSMKSI 81
+YA+ FFK+P ++++I
Sbjct: 198 MYAMGFFKLPEEFHKNLETI 217
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 49.3 bits (116), Expect = 5e-05
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCS-KFLSFGGRMVLFKFVLSFIHVY 63
G F YLG+PI R W+ V D +++LS K S+GGR+VL VLS + ++
Sbjct: 45 GSFPFRYLGIPIHYRKLRNSDWKCVEDMFQRKLSTWKGKNNSYGGRLVLLNSVLSSLPMF 104
Query: 64 ALSFFKVPSGIISSM 78
L FF++P G++ +
Sbjct: 105 MLLFFEIPRGVLQRL 119
>gb|AAX95621.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|50900978|ref|XP_462922.1| hypothetical protein
[Oryza sativa (japonica cultivar-group)]
Length = 263
Score = 48.9 bits (115), Expect = 6e-05
Identities = 25/70 (35%), Positives = 43/70 (60%)
Query: 9 FLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYALSFF 68
F YLGL +G +++ + P++DRI++RL+ S FL +GGR+ L VL I Y +
Sbjct: 3 FTYLGLLMGTTRPKVIDFVPLVDRIERRLTSSSMFLPYGGRLTLVNSVLYAIPRYYMCSL 62
Query: 69 KVPSGIISSM 78
++P +I ++
Sbjct: 63 QLPITVIEAI 72
>gb|AAV25285.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 720
Score = 48.9 bits (115), Expect = 6e-05
Identities = 23/71 (32%), Positives = 42/71 (58%)
Query: 5 GKVIFLYLGLPIGGDLSRLMFWEPVLDRIKKRLSRCSKFLSFGGRMVLFKFVLSFIHVYA 64
G + F YLGLP+ ++ + P++DR+++RL + FL++G R+ + VLS + Y
Sbjct: 443 GTLPFTYLGLPLVTTKPKVSDFAPLIDRVERRLPSTTIFLNYGQRLTMVNSVLSSLPTYY 502
Query: 65 LSFFKVPSGII 75
+ K+P +I
Sbjct: 503 MCTLKLPKKVI 513
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.357 0.167 0.590
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 243,624,032
Number of Sequences: 2540612
Number of extensions: 7783415
Number of successful extensions: 35169
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 85
Number of HSP's that attempted gapping in prelim test: 35043
Number of HSP's gapped (non-prelim): 161
length of query: 175
length of database: 863,360,394
effective HSP length: 119
effective length of query: 56
effective length of database: 561,027,566
effective search space: 31417543696
effective search space used: 31417543696
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 70 (31.6 bits)
Medicago: description of AC142143.6