BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141923.1 + phase: 0 /pseudo
         (83 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAG25608.1| ftsH-like protease [Pisum sativum]                     48  7e-05
gb|AAP32310.1| putative FtsH protease [Lycopersicon esculentum]        42  0.003
ref|NP_918496.1| putative FtsH protease [Oryza sativa (japonica ...    33  1.4
gb|EAL18571.1| hypothetical protein CNBJ2120 [Cryptococcus neofo...    31  7.0
gb|EAL18570.1| hypothetical protein CNBJ2110 [Cryptococcus neofo...    31  7.0
gb|AAW45995.1| lactate transporter, putative [Cryptococcus neofo...    31  7.0

>emb|CAG25608.1| ftsH-like protease [Pisum sativum]
          Length = 706

 Score = 47.8 bits (112), Expect = 7e-05
 Identities = 24/32 (75%), Positives = 25/32 (78%)

Query: 1   MVAALEGGNFKEQQWHTIWFIAAAFLLISCVG 32
           MVAA EGGNFKEQ W TI  +A AFLLIS VG
Sbjct: 166 MVAASEGGNFKEQLWRTIRSVAVAFLLISGVG 197


>gb|AAP32310.1| putative FtsH protease [Lycopersicon esculentum]
          Length = 714

 Score = 42.4 bits (98), Expect = 0.003
 Identities = 20/31 (64%), Positives = 23/31 (73%)

Query: 2   VAALEGGNFKEQQWHTIWFIAAAFLLISCVG 32
           + A+EGGNFKEQ W T   +A AFLLIS VG
Sbjct: 163 MVAVEGGNFKEQLWRTFRSLAVAFLLISGVG 193


>ref|NP_918496.1| putative FtsH protease [Oryza sativa (japonica cultivar-group)]
           gi|20521392|dbj|BAB91903.1| cell division protein ftsH
           (ftsH)-like [Oryza sativa (japonica cultivar-group)]
          Length = 715

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 19/32 (59%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 1   MVAALEGGNFKEQQWHTIWFIAAAFLLISCVG 32
           MV A E G FKEQ W T   IA  FLLIS +G
Sbjct: 171 MVTA-ETGQFKEQLWRTFRSIALTFLLISGIG 201


>gb|EAL18571.1| hypothetical protein CNBJ2120 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 547

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 12  EQQWHTIWFIAAAFLLISCVGTSCIKESEKHIYVRRNA 49
           E  W  I+ + A F L++ +  SC+ ES + I  R  A
Sbjct: 236 EYGWRAIYLMGAGFSLLAAIVRSCLPESRQFIVAREEA 273


>gb|EAL18570.1| hypothetical protein CNBJ2110 [Cryptococcus neoformans var.
           neoformans B-3501A] gi|57229563|gb|AAW45996.1|
           carboxylic acid transport protein, putative
           [Cryptococcus neoformans var. neoformans JEC21]
           gi|58260206|ref|XP_567513.1| carboxylic acid transport
           protein, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 542

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 15  WHTIWFIAAAFLLISCVGTSCIKESEKHIYVRRNA 49
           W  I+F  A F L++ +  +C+ ES + I  R  A
Sbjct: 239 WRAIYFFGAGFSLLAAIVRACLPESRQFIVAREEA 273


>gb|AAW45995.1| lactate transporter, putative [Cryptococcus neoformans var.
           neoformans JEC21] gi|58260204|ref|XP_567512.1| lactate
           transporter, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 547

 Score = 31.2 bits (69), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 12  EQQWHTIWFIAAAFLLISCVGTSCIKESEKHIYVRRNA 49
           E  W  I+ + A F L++ +  SC+ ES + I  R  A
Sbjct: 236 EYGWRAIYLMGAGFSLLAAIVRSCLPESRQFIVAREEA 273


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.368    0.161    0.647 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,976,839
Number of Sequences: 2540612
Number of extensions: 3172469
Number of successful extensions: 20972
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20966
Number of HSP's gapped (non-prelim): 6
length of query: 83
length of database: 863,360,394
effective HSP length: 59
effective length of query: 24
effective length of database: 713,464,286
effective search space: 17123142864
effective search space used: 17123142864
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 68 (30.8 bits)