BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141436.5 + phase: 0 /pseudo
(364 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 109 1e-22
pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana g... 109 1e-22
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 108 3e-22
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 106 1e-21
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 106 1e-21
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 106 1e-21
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 96 2e-18
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 92 2e-17
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 92 2e-17
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 91 5e-17
ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thal... 88 4e-16
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 86 2e-15
ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thal... 86 2e-15
emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabid... 81 4e-14
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta... 81 6e-14
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 79 2e-13
gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (jap... 78 4e-13
gb|AAU89136.1| F-box domain containing protein [Oryza sativa (ja... 78 4e-13
gb|AAD17398.1| putative non-LTR retroelement reverse transcripta... 78 5e-13
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 76 1e-12
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411326|pir||C84488 hypothetical protein
At2g07730 [imported] - Arabidopsis thaliana
Length = 970
Score = 109 bits (273), Expect = 1e-22
Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 17/252 (6%)
Query: 1 QSIFIDESSQDIKIWTHSPTGMYSVKSGYQWLTSNCLS--FAGQTQQETWQWIWKLHLPE 58
+SI D D W + G ++V+S Y+ L G ++ IWKL PE
Sbjct: 599 ESISADALLSDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQ----IWKLVAPE 654
Query: 59 NLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLF 118
++ FIWL H + TN R +HL+ ++C C + ES+LH RDCP IW LL
Sbjct: 655 RVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLP 714
Query: 119 NKDTNFNSQDFNWWFKHYALALNG--NIFVITCWVLWKARNHKVFNGNDWVC---LSHIY 173
+ N F W F + A +F + W WK R VF G +C L I
Sbjct: 715 QRRQNEFFSQFEWLFTNLDPAKGDWPTLFSMGIWWAWKWRCGDVF-GERKLCRDRLKFIK 773
Query: 174 SLHSDV----VAHISNDVIQKPI-K*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRN 228
+ +V V ++N V + + + ++W P D +K+ DG S + G + G I N
Sbjct: 774 DIAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILN 833
Query: 229 NNGDWLLGFFMD 240
G+WL GF ++
Sbjct: 834 LQGEWLGGFALN 845
>pir||A96682 protein F1E22.12 [imported] - Arabidopsis thaliana
gi|6686397|gb|AAF23831.1| F1E22.12 [Arabidopsis
thaliana]
Length = 1055
Score = 109 bits (272), Expect = 1e-22
Identities = 70/252 (27%), Positives = 115/252 (44%), Gaps = 27/252 (10%)
Query: 9 SQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAM 68
++D W S G +SV+S Y+ LT + + +WK+ +PE +K F+WL
Sbjct: 360 ARDRLSWKFSQDGQFSVRSAYEMLTVD--EVPRPNMASFFNCLWKVRVPERVKTFLWLVG 417
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLFNKDTN--FNS 126
+ + T R +HL++ + C+ C +ES+LH RDCP L IW ++ + F+
Sbjct: 418 NQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSK 477
Query: 127 QDFNWWFKHYALALN------GNIFVITCWVLWKARNHKVFNGN-----------DWVCL 169
F W + + IF + W WK R +F N +W
Sbjct: 478 SLFEWLYDNLGDRSGCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAV- 536
Query: 170 SHIYSLHS-DVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRN 228
+Y HS +V+ I+ +++ I W+ P +KVN DG S N G + GG++R+
Sbjct: 537 -EVYRAHSGNVLVGITQPRVERMI---GWVSPCVGWVKVNTDGASRGNPGLASAGGVLRD 592
Query: 229 NNGDWLLGFFMD 240
G W GF ++
Sbjct: 593 CTGAWCGGFSLN 604
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 108 bits (270), Expect = 3e-22
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 19/240 (7%)
Query: 15 WTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMHGNLPT 74
W + G ++V+S Y L + + IWKL PE ++ FIWL + T
Sbjct: 872 WKGTQDGAFTVRSAYSLLQGDVGD--RPNMGSFFNRIWKLITPERVRVFIWLVSQNVIMT 929
Query: 75 NAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLL-FNKDTNFNSQDFNWWF 133
N R +HL+ ++ C C + E++LH RDCP IW LL + F SQ W
Sbjct: 930 NVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFFSQSLLEWL 989
Query: 134 KHYALALNG---NIFVITCWVLWKARNHKVFNGNDWVC----------LSHIYSLHSDVV 180
+ G +F + W WK R VF G +C + +H V
Sbjct: 990 FTNMDPVKGIWPTLFGMGIWWAWKWRCCDVF-GERKICRDRLKFIKDMAEEVRRVHVGAV 1048
Query: 181 AHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNGDWLLGFFMD 240
+ N V + + ++W P D +K+ DG S NHG + GG IRN G+WL GF ++
Sbjct: 1049 GNRPNGV--RVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAIRNGQGEWLGGFALN 1106
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 106 bits (265), Expect = 1e-21
Identities = 69/252 (27%), Positives = 116/252 (45%), Gaps = 23/252 (9%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMH 69
+D W + G ++V S Y L + + Q + +W++ +PE + F+WL +
Sbjct: 308 EDKMSWVGTENGRFTVSSAY--LIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGN 365
Query: 70 GNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDL--LFNKDTNFNSQ 127
+ TNA R +H+ C C + ESL+H RDCP + IW + + + F +
Sbjct: 366 QVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETS 425
Query: 128 DFNWWFKHYALALNG------NIFVITCWVLWKARNHKVFNGNDWVCLSHIYSLHSDV-- 179
W + + + +F +T W WK R VF G D C + L S V
Sbjct: 426 LLEWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVF-GEDSRCRDRVKFLKSAVAE 484
Query: 180 --VAHIS------NDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNG 231
AH++ DV+ + + + W P + + +N DG S N G++ GG+IR+ +G
Sbjct: 485 VEAAHLAANGDAREDVLVERM--IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHG 542
Query: 232 DWLLGFFMDFVV 243
WL+GF ++ V
Sbjct: 543 SWLVGFALNIGV 554
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 106 bits (265), Expect = 1e-21
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 27/252 (10%)
Query: 9 SQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAM 68
S D W + G ++VKS Y +L + Q ++ + +W++ E ++ FIWL +
Sbjct: 251 SNDRTSWGATANGQFTVKSAYSFLLQS--ETQAQNMRQFFDRVWRVTTTERVRVFIWLVV 308
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLFNKDTN--FNS 126
H + T+ R +HL++ C+ C E++LH RDCP IW L+ F S
Sbjct: 309 HQVIMTDVERRRRHLSASGVCQVCKGGDETILHVLRDCPSIAGIWGRLVPRGKITAFFAS 368
Query: 127 QDFNWWFKHYALALN------GNIFVITCWVLWKARNHKVFNGNDWVCLSHIYSLHSDV- 179
+W +++ + +F I W WK R VF G + C + +
Sbjct: 369 NILDWVYQNLSDVTEIRGCPWATLFAIVVWWAWKWRCGNVF-GENGRCRDRVRFVVDQAR 427
Query: 180 ---VAHIS--------NDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRN 228
+AH++ ++V +KW PP K+N DG S N G + GG++R+
Sbjct: 428 EIWIAHLNLRRGAMRGSEVEMS----IKWTPPSTGWFKLNTDGASRGNPGLATAGGVVRD 483
Query: 229 NNGDWLLGFFMD 240
G W +GF ++
Sbjct: 484 GEGQWCVGFVLN 495
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 106 bits (265), Expect = 1e-21
Identities = 69/252 (27%), Positives = 116/252 (45%), Gaps = 23/252 (9%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAMH 69
+D W + G ++V S Y L + + Q + +W++ +PE + F+WL +
Sbjct: 295 EDKMSWVGTENGRFTVSSAY--LIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWLVGN 352
Query: 70 GNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDL--LFNKDTNFNSQ 127
+ TNA R +H+ C C + ESL+H RDCP + IW + + + F +
Sbjct: 353 QVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFFETS 412
Query: 128 DFNWWFKHYALALNG------NIFVITCWVLWKARNHKVFNGNDWVCLSHIYSLHSDV-- 179
W + + + +F +T W WK R VF G D C + L S V
Sbjct: 413 LLEWMYGNLKERSDSERRSWPTLFALTVWWGWKWRCGYVF-GEDSRCRDRVKFLKSAVAE 471
Query: 180 --VAHIS------NDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNG 231
AH++ DV+ + + + W P + + +N DG S N G++ GG+IR+ +G
Sbjct: 472 VEAAHLAANGDAREDVLVERM--IAWRKPAEGWVTMNTDGASHGNPGQATAGGVIRDEHG 529
Query: 232 DWLLGFFMDFVV 243
WL+GF ++ V
Sbjct: 530 SWLVGFALNIGV 541
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412100|pir||F84611 hypothetical protein
At2g22350 [imported] - Arabidopsis thaliana
gi|15227192|ref|NP_179822.1| RNase H domain-containing
protein [Arabidopsis thaliana]
Length = 321
Score = 95.9 bits (237), Expect = 2e-18
Identities = 60/201 (29%), Positives = 98/201 (47%), Gaps = 18/201 (8%)
Query: 57 PENLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDL 116
PE ++ F+WL + + TN R +HL+ C+ C E++LH RDCP IW L
Sbjct: 3 PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62
Query: 117 LFNKDTN--FNSQDFNWWFKHYALALNGN---IFVITCWVLWKARNHKVFNGNDWVCLSH 171
+ F + W +K+ L G+ +FV+ W WK R +F GN C
Sbjct: 63 VPRDQIRQFFTASLLEWIYKN--LRERGSWPTVFVMAVWWGWKWRCGNIFGGNG-KCRDR 119
Query: 172 IYSLHSDVVAHIS--------NDV-IQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVF 222
+ + D+ ++ N+V + + + V W+ P D +K+N DG S N G +
Sbjct: 120 VKFI-KDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATA 178
Query: 223 GGLIRNNNGDWLLGFFMDFVV 243
GG++R++NG W+ GF ++ V
Sbjct: 179 GGVLRDHNGAWIGGFAVNIGV 199
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 92.4 bits (228), Expect = 2e-17
Identities = 65/246 (26%), Positives = 106/246 (42%), Gaps = 22/246 (8%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQ------ETWQWIWKLHLPENLKHF 63
+D W HS G+YSVK+GY++L+ Q + + IW LH ++ F
Sbjct: 977 EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIF 1036
Query: 64 IWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWD-DLLFNKDT 122
+W A+HG +P + + SD C C E++ H +CPL+ +W L + +
Sbjct: 1037 LWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGS 1096
Query: 123 NFNSQDFNWWFKHYALALNGNI-----FVI--TCWVLWKARNHKVFNGNDWVCLSHI--- 172
F++ + + L ++ FV W LWK RN +F G + + +
Sbjct: 1097 EFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKA 1156
Query: 173 ---YSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNN 229
Y H+ ND +K +K KW PPL +K N+ H S ++R++
Sbjct: 1157 YEAYHEWFSAQTHMQND--EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDS 1214
Query: 230 NGDWLL 235
G LL
Sbjct: 1215 QGKVLL 1220
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 92.4 bits (228), Expect = 2e-17
Identities = 65/246 (26%), Positives = 106/246 (42%), Gaps = 22/246 (8%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQ------ETWQWIWKLHLPENLKHF 63
+D W HS G+YSVK+GY++L+ Q + + IW LH ++ F
Sbjct: 998 EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIF 1057
Query: 64 IWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWD-DLLFNKDT 122
+W A+HG +P + + SD C C E++ H +CPL+ +W L + +
Sbjct: 1058 LWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFECPLARQVWAITHLSSAGS 1117
Query: 123 NFNSQDFNWWFKHYALALNGNI-----FVI--TCWVLWKARNHKVFNGNDWVCLSHI--- 172
F++ + + L ++ FV W LWK RN +F G + + +
Sbjct: 1118 EFSNSVYTNMSRLIDLTQQNDLPHHLRFVSPWILWFLWKNRNALLFEGKGSITTTLVDKA 1177
Query: 173 ---YSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNN 229
Y H+ ND +K +K KW PPL +K N+ H S ++R++
Sbjct: 1178 YEAYHEWFSAQTHMQND--EKHLKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDS 1235
Query: 230 NGDWLL 235
G LL
Sbjct: 1236 QGKVLL 1241
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 90.9 bits (224), Expect = 5e-17
Identities = 64/247 (25%), Positives = 106/247 (42%), Gaps = 23/247 (9%)
Query: 7 ESSQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQ-------ETWQWIWKLHLPEN 59
+ ++D W +S +G YSVKSGY W+ + ++ Q+ +Q IWKL +P
Sbjct: 1004 KETRDRFTWEYSRSGHYSVKSGY-WVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPK 1062
Query: 60 LKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLFN 119
+ HF+W ++ L + A +HL + SC RC + E++ H CP + W
Sbjct: 1063 IHHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLP 1122
Query: 120 KDTNFNSQDFNWWFKHYALALNGN---------IFVITCWVLWKARNHKVFNGNDWVCLS 170
+ + H+ L+++ + + W LWK RN VF G ++
Sbjct: 1123 APPGGEWAESLFRNMHHVLSVHKSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQ 1182
Query: 171 HIYSLHSDVVAHISNDVIQKPI------K*VKWIPPLDNIIKVNVDGISLSNHGRSVFGG 224
I D+ A + Q + + VKW PP +K N DG + G G
Sbjct: 1183 VILKATEDMDAWNNRKEPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGW 1242
Query: 225 LIRNNNG 231
++RN+ G
Sbjct: 1243 VLRNHTG 1249
>ref|NP_850866.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 411
Score = 88.2 bits (217), Expect = 4e-16
Identities = 64/250 (25%), Positives = 110/250 (43%), Gaps = 29/250 (11%)
Query: 9 SQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAM 68
++D+ W+ G +SVKS Y LT + + +W++ +PE ++ F WL
Sbjct: 43 ARDMISWSGEADGRFSVKSAYGLLTRD--DTPRPDMGALFGRVWRIKVPERVRVFFWLLG 100
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLFNKDTN--FNS 126
+ + TN R +HL + C+ C +ES +H RDCP IW ++ + + F
Sbjct: 101 NQAIMTNEERHRRHLCASDLCEVCKGGVESAMHILRDCPTMEGIWLRIVPPRKRHEFFKK 160
Query: 127 QDFNWWFKHYA--LALNG----NIFVITCWVLWKARNHKVFNGNDWVCLSHIYSLHSDVV 180
F W + + ++G +F + W WK R VF G + C + V
Sbjct: 161 SLFEWVYGNLGDDAVVDGVPWSVMFAMGVWWGWKWRCGNVF-GENRKCRDRV-----QFV 214
Query: 181 AHISNDVIQ-------------KPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIR 227
+++ +V Q + + + W P +K+N DG S N G + GG++R
Sbjct: 215 KNVAKEVFQAHGSRAGNDRGRNRVERLIGWGSPGVGWVKLNTDGASRGNPGLATAGGVLR 274
Query: 228 NNNGDWLLGF 237
+ G+W GF
Sbjct: 275 DEEGNWRGGF 284
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 85.5 bits (210), Expect = 2e-15
Identities = 68/256 (26%), Positives = 109/256 (42%), Gaps = 45/256 (17%)
Query: 9 SQDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQWIWKLHLPENLKHFIWLAM 68
++D W +S G+++VKS Y+ LT + + +W++ E +K F+W
Sbjct: 656 ARDRLSWGYSADGVFTVKSAYRLLTED--HDPRPNMAAFFDRLWRVVALERVKTFLW--- 710
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLFNKDTN--FNS 126
H+ S C+ C E++LH +DCP IW L+ + + FN
Sbjct: 711 -------------HIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSYDFFNG 757
Query: 127 QDFNWWFKHYAL--ALNG----NIFVITCWVLWKARNHKVFNGNDWVC------------ 168
F W + + + A G +F I W WK R VF G C
Sbjct: 758 SLFGWLYVNLGMKNAETGYAWATLFAIVVWWSWKWRCGYVF-GEVGKCRDRVKFFRDLAA 816
Query: 169 -LSHIYSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIR 227
+SH +++HS + + + + V W PP +K+N DG S N G + GG++R
Sbjct: 817 EVSHAHAIHSQ-----NGGLRTRVERLVAWKPPDGEWVKLNTDGASRGNLGLATTGGVLR 871
Query: 228 NNNGDWLLGFFMDFVV 243
+ G W GF +D V
Sbjct: 872 DGIGHWCGGFALDIGV 887
>ref|NP_680680.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 396
Score = 85.5 bits (210), Expect = 2e-15
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 25/252 (9%)
Query: 11 DIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQ--QETWQWIWKLHLPENLKHFIWLAM 68
D W+ + G ++V S Y L QTQ + + IW++ PE ++ F+WL
Sbjct: 29 DTLSWSGTENGEFTVGSAYSLLMEE----GSQTQDMERFFSRIWRVLAPERVRVFLWLVG 84
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLL--FNKDTNFNS 126
+ + TN RA +H+ C+ C + E+++H RDCP IW L+ ++ F
Sbjct: 85 NQAILTNVERARRHMGDTDVCQVCRGAKETIIHVLRDCPAMSGIWLRLVPARERERFFTR 144
Query: 127 QDFNWWFKHYALALNGN------IFVITCWVLWKARNHKVFNGNDWVCLSHIYSLHSDVV 180
W +++ + + +F ++ W WK R VF G C + + D+
Sbjct: 145 SLLEWLYENLHQKEDPSRGGWPTLFAMSIWWGWKWRCMNVF-GELRPCRDRVRFVR-DMA 202
Query: 181 AHI---------SNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGGLIRNNNG 231
A + ++ ++ + + W P + VN DG S N G + G++R+ G
Sbjct: 203 AEVGAAYLKVNAGRNLGERVERQIVWKKPSERWATVNTDGASHGNPGFATARGVVRDGEG 262
Query: 232 DWLLGFFMDFVV 243
WL GF ++ V
Sbjct: 263 SWLGGFALNIGV 274
>emb|CAB78094.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
gi|4538901|emb|CAB39638.1| RNA-directed DNA
polymerase-like protein [Arabidopsis thaliana]
gi|7485606|pir||T04018 hypothetical protein F17A8.60 -
Arabidopsis thaliana
Length = 1274
Score = 81.3 bits (199), Expect = 4e-14
Identities = 52/165 (31%), Positives = 80/165 (47%), Gaps = 13/165 (7%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQQETWQW-IWKLHLPENLKHFIWLAM 68
QD +W +G Y+ K+GY N SF WQ IWK+H +KHF+W AM
Sbjct: 934 QDSLVWLPVKSGEYTTKTGYALAKLN--SFPASQLDFNWQKNIWKIHTSPKVKHFLWKAM 991
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWD--DLLFN-KDTNFN 125
G LP + +++ ++ +CKRCG + ES LH CP + +W+ +LFN + +
Sbjct: 992 KGALPVGEALSRRNIEAEVTCKRCGQT-ESSLHLMLLCPYAKKVWELAPVLFNPSEATHS 1050
Query: 126 SQDFNWWFKHYALAL------NGNIFVITCWVLWKARNHKVFNGN 164
S +AL + ++ W LWKARN +F+ +
Sbjct: 1051 SVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNH 1095
>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411805|pir||C84554 hypothetical protein
At2g17610 [imported] - Arabidopsis thaliana
Length = 773
Score = 80.9 bits (198), Expect = 6e-14
Identities = 50/174 (28%), Positives = 77/174 (43%), Gaps = 18/174 (10%)
Query: 9 SQDIKIWTHSPTGMYSVKSGYQWLT-------SNCLSFAGQTQQETWQWIWKLHLPENLK 61
+ D W ++ G YSVKSGY L ++ S + Q + IWK + P +K
Sbjct: 452 ANDAITWIYTHDGNYSVKSGYHLLRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIK 511
Query: 62 HFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWD------- 114
HF W + H LPT + L +D +C+RCG + E + H C +S IW+
Sbjct: 512 HFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQAHIKLC 571
Query: 115 --DLLFNKDTNFNSQDFNWWFKHYALALNGNIFVITCWVLWKARNHKVFNGNDW 166
D L + N N + + + + ++F W +WK RN +FN W
Sbjct: 572 PGDSLMSNSFNQNLESIQ--KLNQSARKDVSLFPFIGWRIWKMRNDLIFNNKRW 623
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 79.0 bits (193), Expect = 2e-13
Identities = 61/251 (24%), Positives = 98/251 (38%), Gaps = 29/251 (11%)
Query: 11 DIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQ------------QETWQWIWKLHLPE 58
D W H G+YSV+S Y S FA Q+ Q+ W+ +WK++ P
Sbjct: 1015 DFASWPHDKLGLYSVRSAYNLARSEAF-FADQSNSGRGMASRLLESQKDWKGLWKINAPG 1073
Query: 59 NLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLF 118
+K +W A H L T +H+ S C C +++ H F CP + IW+++
Sbjct: 1074 KMKITLWRAAHECLATGFQLRRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKG 1132
Query: 119 NKDTNFNSQDFN----WWFKHYALALN--GNIFVITCWVLWKARNHKVFNGNDWV----- 167
F+ W F + + +T W +W+ARN+ N N V
Sbjct: 1133 KCAVKLGRNGFSTMRQWIFDFLKRGSSHANTLLAVTFWHIWEARNN-TKNNNGTVHPQRV 1191
Query: 168 ---CLSHIYSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGG 224
LS++ + + +W PP ++ +N D S+ G
Sbjct: 1192 VIKILSYVDMILKHNTKTVDGQRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGA 1251
Query: 225 LIRNNNGDWLL 235
LIR+N G L+
Sbjct: 1252 LIRDNTGKCLV 1262
>gb|AAP44645.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50917607|ref|XP_469200.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 404
Score = 78.2 bits (191), Expect = 4e-13
Identities = 60/251 (23%), Positives = 98/251 (38%), Gaps = 29/251 (11%)
Query: 11 DIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQ------------QETWQWIWKLHLPE 58
D W H G+YSV+S Y + S FA Q+ Q+ W+ +WK++ P
Sbjct: 37 DFASWPHEKLGLYSVRSAYNMVRSEAF-FADQSNSGRGMASRLLESQKDWKGLWKINAPG 95
Query: 59 NLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLF 118
+K +W A H L T +H+ S C C +++ H F CP + IW+++
Sbjct: 96 KMKIILWRAAHECLATGFQLPRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKR 154
Query: 119 NKDTNFNSQDF----NWWFKHY--ALALNGNIFVITCWVLWKARNHKVFNGNDWV----- 167
F +W F + + +T W +W+ARN+ N N V
Sbjct: 155 KCAVKLGRNGFSTMRHWIFDFLKRGSSHTNTLLAVTFWHIWEARNN-TKNNNGTVHPQRV 213
Query: 168 ---CLSHIYSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGG 224
LS++ + + + +W P + +N D S+ G
Sbjct: 214 VIKILSYVDMILKHNTKTVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGA 273
Query: 225 LIRNNNGDWLL 235
LIR+N G L+
Sbjct: 274 LIRDNTGKCLV 284
>gb|AAU89136.1| F-box domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 855
Score = 78.2 bits (191), Expect = 4e-13
Identities = 60/251 (23%), Positives = 98/251 (38%), Gaps = 29/251 (11%)
Query: 11 DIKIWTHSPTGMYSVKSGYQWLTSNCLSFAGQTQ------------QETWQWIWKLHLPE 58
D W H G+YSV+S Y + S FA Q+ Q+ W+ +WK++ P
Sbjct: 488 DFASWPHEKLGLYSVRSAYNMVRSEAF-FADQSNSGRGMASRLLESQKDWKGLWKINAPG 546
Query: 59 NLKHFIWLAMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIWDDLLF 118
+K +W A H L T +H+ S C C +++ H F CP + IW+++
Sbjct: 547 KMKIILWRAAHECLATGFQLPRRHIPSTDGCVFCNRD-DTVEHVFLFCPFAAQIWEEIKR 605
Query: 119 NKDTNFNSQDF----NWWFKHY--ALALNGNIFVITCWVLWKARNHKVFNGNDWV----- 167
F +W F + + +T W +W+ARN+ N N V
Sbjct: 606 KCAVKLGRNGFSTMRHWIFDFLKRGSSHTNTLLAVTFWHIWEARNN-TKNNNGTVHPQRV 664
Query: 168 ---CLSHIYSLHSDVVAHISNDVIQKPIK*VKWIPPLDNIIKVNVDGISLSNHGRSVFGG 224
LS++ + + + +W P + +N D S+ G
Sbjct: 665 VIKILSYVDMILKHNTKTVDGQRGENTQAIPRWQPLPAGVWMINSDAAIFSSSRTMGVGA 724
Query: 225 LIRNNNGDWLL 235
LIR+N G L+
Sbjct: 725 LIRDNTGKCLV 735
>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411644|pir||C84530 hypothetical protein
At2g15540 [imported] - Arabidopsis thaliana
Length = 1225
Score = 77.8 bits (190), Expect = 5e-13
Identities = 50/162 (30%), Positives = 76/162 (46%), Gaps = 16/162 (9%)
Query: 15 WTHSPTGMYSVKSGYQWLTSNC------LSFAGQTQQETWQWIWKLHLPENLKHFIWLAM 68
W+ + +G Y+VKSGY W + L F G + +WK+ KHF W +
Sbjct: 885 WSFTKSGNYTVKSGY-WAARDLSRPTCDLPFQGPSVSALQAQVWKIKTTRKFKHFEWQCL 943
Query: 69 HGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW-------DDLLFNKD 121
G L TN +H+ ++ C RCGA ES+ H CP S IW + +F ++
Sbjct: 944 SGCLATNQRLFSRHIGTEKVCPRCGAEEESINHLLFLCPPSRQIWALSPIPSSEYIFPRN 1003
Query: 122 TNFNSQDFNW-WFKHYALALN-GNIFVITCWVLWKARNHKVF 161
+ F + DF K + +A + IF W +WK+RN +F
Sbjct: 1004 SLFYNFDFLLSRGKEFDIAEDIMEIFPWILWYIWKSRNRFIF 1045
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 76.3 bits (186), Expect = 1e-12
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 10 QDIKIWTHSPTGMYSVKSGYQWLTSNC---LSFAGQTQQETWQWIWKLHLPENLKHFIWL 66
+D W + G Y+VKSGY + + G +IWK+ P L+HF+W
Sbjct: 784 EDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQ 843
Query: 67 AMHGNLPTNAFRAGKHLTSDSSCKRCGASIESLLHTFRDCPLSLAIW-------DDLLFN 119
+ G +P + + + D C CGAS ES+ HT C + IW +F
Sbjct: 844 ILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFP 903
Query: 120 KDTNFNSQDFNWWFKHYALALNGNIFVITCWVLWKARNHKVFNGND 165
++ F + D +W ++ + W +WKARN KVF D
Sbjct: 904 SNSIFTNLDHLFW--RIPSGVDSAPYPWIIWYIWKARNEKVFENVD 947
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.337 0.147 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,162,860
Number of Sequences: 2540612
Number of extensions: 25552393
Number of successful extensions: 87227
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 82
Number of HSP's that attempted gapping in prelim test: 86819
Number of HSP's gapped (non-prelim): 275
length of query: 364
length of database: 863,360,394
effective HSP length: 129
effective length of query: 235
effective length of database: 535,621,446
effective search space: 125871039810
effective search space used: 125871039810
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 76 (33.9 bits)
Medicago: description of AC141436.5