BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.9 - phase: 0
(523 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP21257.1| At5g24340 [Arabidopsis thaliana] gi|10177895|dbj|... 582 e-164
ref|XP_477920.1| unknown protein [Oryza sativa (japonica cultiva... 473 e-132
ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Ar... 80 2e-13
gb|AAV43946.1| unknown protein [Oryza sativa (japonica cultivar-... 79 4e-13
ref|XP_548348.1| PREDICTED: similar to hypothetical protein FLJ2... 73 3e-11
ref|XP_415556.1| PREDICTED: similar to hypothetical protein FLJ2... 70 2e-10
dbj|BAC04356.1| unnamed protein product [Homo sapiens] gi|313777... 69 3e-10
dbj|BAB70838.1| unnamed protein product [Homo sapiens] 69 3e-10
dbj|BAC10986.1| HBE269 [Homo sapiens] 68 6e-10
ref|YP_169783.1| Ribonuclease D [Francisella tularensis subsp. t... 66 3e-09
gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct] 66 3e-09
ref|NP_926693.1| probable ribonuclease D [Gloeobacter violaceus ... 64 9e-09
emb|CAB50219.1| Hypothetical protein [Pyrococcus abyssi GE5] gi|... 64 9e-09
emb|CAC12226.1| conserved hypothetical protein [Thermoplasma aci... 64 1e-08
emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis... 64 2e-08
gb|AAN70164.1| ribonuclease D [Pseudomonas putida KT2440] gi|269... 63 2e-08
gb|EAL34566.1| GA21642-PA [Drosophila pseudoobscura] 63 3e-08
gb|AAF53970.1| CG9247-PA [Drosophila melanogaster] gi|20129683|r... 62 3e-08
gb|AAM49831.1| GM01690p [Drosophila melanogaster] 62 3e-08
ref|ZP_00263471.1| COG0349: Ribonuclease D [Pseudomonas fluoresc... 62 4e-08
>gb|AAP21257.1| At5g24340 [Arabidopsis thaliana] gi|10177895|dbj|BAB11227.1|
unnamed protein product [Arabidopsis thaliana]
gi|15237941|ref|NP_197822.1| 3'-5' exonuclease
domain-containing protein [Arabidopsis thaliana]
Length = 505
Score = 582 bits (1500), Expect = e-164
Identities = 298/492 (60%), Positives = 369/492 (74%), Gaps = 17/492 (3%)
Query: 9 LEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLG---D 65
L+I+ V++TDS EFTHL S T+++++ LDAEWKP ++ +SFPTV+LLQ+AC+L D
Sbjct: 5 LKIYLVSSTDSSEFTHLKWSFTRSTIIALDAEWKPQHSNTSSFPTVTLLQVACRLSHATD 64
Query: 66 DEVVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKV 125
VFL+DL S+ L S+WE L +M VS D+LKLGFRFKQDLVYLSSTF + GC GF +V
Sbjct: 65 VSDVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQDLVYLSSTFTQHGCEGGFQEV 124
Query: 126 EPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQM 185
+ YLDITS+YN+LQ K+ GR A K KSL+ IC E+L I+LSKELQCSDWS RPLTEEQ
Sbjct: 125 KQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDISLSKELQCSDWSYRPLTEEQK 184
Query: 186 TYAAMDAHCLLGIFKVFQATVAKEGELVNKTNILSIRSANLGLKELFRKHDTSDKVHSTQ 245
YAA DAHCLL IF VF+A LV + +R N+GL+E+ + D S K+ + +
Sbjct: 185 LYAATDAHCLLQIFDVFEA------HLVEGITVQDLRVINVGLQEILTESDYSSKIVTVK 238
Query: 246 FCEALAIVQATSCSDVVRVISSAGAVIQKSSCRDTKPMDEFLLKIVRKHGDRILLKESDR 305
C+A ++++ S + + A V+ + + +T PMDE LLKIVRK G+RILLKESD
Sbjct: 239 LCKATDVIRSMSENGQ----NIANGVVPRKTTLNTMPMDENLLKIVRKFGERILLKESDL 294
Query: 306 APKTSKKKRKKQLPINGIPKEKHLENFDEWQGTAPWDPLVGGDGFPKFLCDVMVEGLAKH 365
PK KKK ++++ + + K L +WQG PWD +GGDG PKFL DVMVEGLAKH
Sbjct: 295 LPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFLLDVMVEGLAKH 354
Query: 366 LRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHD----YQIYKVKSLLKNE 421
LRCVGIDAA+P SKKP+ REL+ +A KE RVLLTRD KLLRH +QIY+VKSLLKNE
Sbjct: 355 LRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQIYRVKSLLKNE 414
Query: 422 QLLEIIETFQLNINEDQLMSRCTKCNGRFIQKPLSTEEAIEAAKGFQKIPNCLFNKNLEF 481
QLLE+IETFQL I+ +QLMSRCTKCNG+FIQKPLS EEAIEAAKGFQ+IPNCLFNKNLEF
Sbjct: 415 QLLEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRIPNCLFNKNLEF 474
Query: 482 WQCMDCHQLYWE 493
WQCM+CHQLYWE
Sbjct: 475 WQCMNCHQLYWE 486
>ref|XP_477920.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|34394896|dbj|BAC84412.1| unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 501
Score = 473 bits (1216), Expect = e-132
Identities = 263/520 (50%), Positives = 335/520 (63%), Gaps = 74/520 (14%)
Query: 3 PPNQKPLEIHFVTTT-DSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQN------------ 49
PP PL +H VT SPE L RSL +V LDAEWKP R
Sbjct: 8 PPASPPLAVHLVTGGGSSPEHALLLRSLAAARVVALDAEWKPRRRGPAVADDPSAAAAAT 67
Query: 50 ----SFPTVSLLQIACQLGDDE-------VVFLLDLISLPLSSIWEPLREMLVSADILKL 98
FPTV+LLQ+AC+ GD + VF++DL+++PL+ + EPLRE+ ++LKL
Sbjct: 68 PPPLQFPTVTLLQVACR-GDGDGGGAAAAEVFVVDLLAVPLAELREPLRELFERPEVLKL 126
Query: 99 GFRFKQDLVYLSSTFCEQ-GCNPGFDKVEPYLDITSVYNHLQFKKNGRIASKQNKSLSTI 157
GFRFKQDLVYLS+TF G + GF++VEP+LD+T+ Y +L+ + ++ KSL+TI
Sbjct: 127 GFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAYYYLKGHDMQKRLPRETKSLATI 186
Query: 158 CGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIFKVFQATVAKEGELVNKTN 217
C ELLG+ LSKELQCSDWS RPL+E Q+ YAA DA+ LL IF +F + EG+ + TN
Sbjct: 187 CEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKIRTEGKCL-PTN 245
Query: 218 ILSIRSANLGLKELFRKHDTSDKVHSTQFCEALAIVQATSCSDVVRVISSAGAVIQKSSC 277
L TSD H Q + CS S
Sbjct: 246 EL-----------------TSDG-HCPQ--------RDAECS----------------SS 263
Query: 278 RDTKPMDEFLLKIVRKHGDRILLKESDRAPKTSKKKRKKQLPINGIPKEKHLENFDEWQG 337
D D++ +V K+ ++ILL ESD P++S++K K++L N KEK E EWQG
Sbjct: 264 EDAVCFDDYFTSVVMKYAEKILLTESDTKPRSSRRKEKQKLATNAKCKEK-FEGSTEWQG 322
Query: 338 TAPWDPLVGGDGFPKFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVL 397
PWDP GGDG PKFLCDVM+EGLAKHLRCVGIDAA PSS+KPEPREL+ + KE+RVL
Sbjct: 323 LPPWDPSAGGDGCPKFLCDVMIEGLAKHLRCVGIDAATPSSRKPEPRELLNQTYKERRVL 382
Query: 398 LTRDAKLLRHDY----QIYKVKSLLKNEQLLEIIETFQLNINEDQLMSRCTKCNGRFIQK 453
LTRD KLL++ Y Q+Y+VKSLLK++QL E+I+TFQL I+ED+LMSRCTKCNGRFIQK
Sbjct: 383 LTRDVKLLKYQYLTSNQVYRVKSLLKHDQLAEVIDTFQLKISEDKLMSRCTKCNGRFIQK 442
Query: 454 PLSTEEAIEAAKGFQKIPNCLFNKNLEFWQCMDCHQLYWE 493
PL+ +EAIEA+KGFQ IP+CLF +NLEFW+C DC+QLYWE
Sbjct: 443 PLTLDEAIEASKGFQIIPSCLFKRNLEFWKCTDCNQLYWE 482
>ref|NP_176027.1| 3'-5' exonuclease domain-containing protein [Arabidopsis thaliana]
gi|12321757|gb|AAG50917.1| 3'-5' exonuclease, putative
[Arabidopsis thaliana] gi|25404113|pir||H96604 probable
3'-5' exonuclease [imported] - Arabidopsis thaliana
Length = 582
Score = 80.1 bits (196), Expect = 2e-13
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 36/197 (18%)
Query: 21 EFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISL--P 78
E T L +VG+D EWKP + VS++QI G D +F+LDLI L
Sbjct: 367 ELRKATSFLEGCRVVGIDCEWKPNYIKGSKQNKVSIMQI----GSDTKIFILDLIKLYND 422
Query: 79 LSSIWEP-LREMLVSADILKL--------------GFRFKQDLVYLSSTFCEQGCNPGFD 123
S I + L +L S LKL G+ F+ D+ L+ ++ + C F+
Sbjct: 423 ASEILDNCLSHILQSKSTLKLVSLTEDYPDHKLSSGYNFQCDIKQLALSYGDLKC---FE 479
Query: 124 KVEPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEE 183
+ + LDI +V+N + L+ + ++LG++L+K + SDW QRPL++
Sbjct: 480 RYDMLLDIQNVFN------------EPFGGLAGLTKKILGVSLNKTRRNSDWEQRPLSQN 527
Query: 184 QMTYAAMDAHCLLGIFK 200
Q+ YAA+DA L+ IF+
Sbjct: 528 QLEYAALDAAVLIHIFR 544
>gb|AAV43946.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 580
Score = 79.0 bits (193), Expect = 4e-13
Identities = 57/169 (33%), Positives = 85/169 (49%), Gaps = 22/169 (13%)
Query: 34 LVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLSS---IWEPLREML 90
++G+D EWKP + VS++QIA D+ F+ DLI L + R ++
Sbjct: 395 IIGVDCEWKPNFEKGSKPNKVSIIQIA----SDKKAFIFDLIKLYEDDPKVLDSCFRRIM 450
Query: 91 VSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLDITSVYNHLQFKKNGRIASKQ 150
S++ILKLG+ + DL LS ++ E C F E LDI ++
Sbjct: 451 CSSNILKLGYNLQCDLHQLSQSYGELKC---FQSYEMLLDIQKLFKGT------------ 495
Query: 151 NKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIF 199
LS + ++LG L+K + S+W QRPLT+ Q YAA+DA L+ IF
Sbjct: 496 TGGLSGLSKKILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIF 544
>ref|XP_548348.1| PREDICTED: similar to hypothetical protein FLJ20433 [Canis
familiaris]
Length = 897
Score = 72.8 bits (177), Expect = 3e-11
Identities = 62/205 (30%), Positives = 98/205 (47%), Gaps = 26/205 (12%)
Query: 10 EIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVV 69
+IHF+ + + H L +VG+D EW+P P S++Q+A V
Sbjct: 359 DIHFLASWEDLA-RHEAELLQPGQVVGVDLEWRP-SFGTGGRPQASIMQVAV----GGRV 412
Query: 70 FLLDL--ISLPLS-----SIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGF 122
FLLDL +S P + + ++L I KLG+ DL L ++ P
Sbjct: 413 FLLDLPLLSQPTGGQASQAFCRLVSQLLSDPSITKLGYGMAGDLRSLGASC------PTL 466
Query: 123 DKVEPYL----DITSVYNHLQFKKN---GRIASKQNKSLSTICGELLGITLSKELQCSDW 175
VE L D+ V+ ++ GR ++ + LS + ++LG L K Q S+W
Sbjct: 467 AHVEKQLRGGLDLLQVHRQMRIADMPALGRGEARGLRGLSLLVQQVLGRPLDKAQQLSNW 526
Query: 176 SQRPLTEEQMTYAAMDAHCLLGIFK 200
+RPL+EEQ+ YAA DA+CLL +++
Sbjct: 527 DRRPLSEEQLVYAAADAYCLLEVYQ 551
Score = 45.8 bits (107), Expect = 0.003
Identities = 32/121 (26%), Positives = 56/121 (45%), Gaps = 9/121 (7%)
Query: 335 WQGTAPWDPLVGGDGFPKF--LCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQK 392
WQ A + + G F +CD M++GLA+ LRC+G+D + + R A++
Sbjct: 594 WQEPAAKEDMAPGVPARAFRVVCDNMLQGLARSLRCLGVD-VLALGTDDDHRRAAEVARQ 652
Query: 393 EKRVLLTRDAKLLRHDYQIYKVK------SLLKNEQLLEIIETFQLNINEDQLMSRCTKC 446
E R++LT + Q+ + SL +Q +++ F + + + SRC C
Sbjct: 653 EGRIILTSGLPYHKLRAQVGAGRCLSVDCSLKARQQAKAVLKHFNVCVTHADIFSRCQAC 712
Query: 447 N 447
N
Sbjct: 713 N 713
>ref|XP_415556.1| PREDICTED: similar to hypothetical protein FLJ20433 [Gallus gallus]
Length = 1737
Score = 70.1 bits (170), Expect = 2e-10
Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 40/197 (20%)
Query: 34 LVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLSSIWEPLREMLV-- 91
+VG+D EW+P P VSLLQ+A + + VFLLDL L + + +E L
Sbjct: 617 IVGIDMEWRPSFGMVGK-PRVSLLQLAVR----DEVFLLDLPRLLEQAEVKGEKEKLPHF 671
Query: 92 ------SADILKLGFRFKQDLVYLSSTFCEQGCNP--GFDKV-EPYLDITSVYNHLQ--- 139
A I KLG+ DL L++T C+ G DK + +D+ ++ LQ
Sbjct: 672 IQRLYSDATITKLGYGMSGDLSSLAAT-----CSTLKGMDKQSQSVVDLLTIDKLLQKSS 726
Query: 140 --FKKNGR----IASKQN----------KSLSTICGELLGITLSKELQCSDWSQRPLTEE 183
+KK G ++ +Q+ K LS + +LG L K Q S+W +RPL EE
Sbjct: 727 TDWKKGGLKVDVLSPEQSCEDGGLRQPEKGLSLLVQHVLGKPLDKTEQMSNWEKRPLREE 786
Query: 184 QMTYAAMDAHCLLGIFK 200
Q+ YAA DA+CLL +++
Sbjct: 787 QILYAASDAYCLLEVYE 803
>dbj|BAC04356.1| unnamed protein product [Homo sapiens] gi|31377746|ref|NP_060290.2|
hypothetical protein LOC54932 [Homo sapiens]
Length = 758
Score = 69.3 bits (168), Expect = 3e-10
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 25/179 (13%)
Query: 34 LVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLP-------LSSIWEPL 86
+VG+D EW PV P SLLQ+A + VFLLD+++L + +
Sbjct: 395 VVGVDVEWTPVFV-AGGRPRPSLLQVAVE----GHVFLLDVLALSQPPTGQGAQAFSRLV 449
Query: 87 REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYL----DITSVYNHLQFKK 142
++L I KLG+ DL L T C P VE + D+ V+ ++
Sbjct: 450 AQLLSDPSITKLGYGMVGDLQKLG-TSC-----PALAHVEKQILGGMDLLLVHRQMRVAS 503
Query: 143 NGRIA---SKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGI 198
A +++ + LS + ++LG L K Q S+W +RPL EEQ+ YAA DA+CLL +
Sbjct: 504 VPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEV 562
Score = 48.9 bits (115), Expect = 4e-04
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 352 KFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHDYQI 411
+ +CD M++GLA+ LRC+G+DA + + + + R A++E R++LT + Q+
Sbjct: 631 RVVCDNMLQGLARSLRCLGVDARMLGNGE-DHRRAAEVARQEGRIILTSGQPFHKLRAQV 689
Query: 412 YKVK------SLLKNEQLLEIIETFQLNINEDQLMSRCTKCN 447
+ SL +Q +++ F + + + SRC CN
Sbjct: 690 GAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACN 731
>dbj|BAB70838.1| unnamed protein product [Homo sapiens]
Length = 599
Score = 69.3 bits (168), Expect = 3e-10
Identities = 58/179 (32%), Positives = 87/179 (48%), Gaps = 25/179 (13%)
Query: 34 LVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLP-------LSSIWEPL 86
+VG+D EW PV P SLLQ+A + VFLLD+++L + +
Sbjct: 118 VVGVDVEWTPVFV-AGGRPRPSLLQVAVE----GHVFLLDVLALSQPPTGQGAQAFSRLV 172
Query: 87 REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYL----DITSVYNHLQFKK 142
++L I KLG+ DL L T C P VE + D+ V+ ++
Sbjct: 173 AQLLSDPSITKLGYGMVGDLQKLG-TSC-----PALAHVEKQILGGMDLLLVHRQMRVAS 226
Query: 143 NGRIA---SKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGI 198
A +++ + LS + ++LG L K Q S+W +RPL EEQ+ YAA DA+CLL +
Sbjct: 227 VPAPAVDRARELRGLSLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEV 285
Score = 48.9 bits (115), Expect = 4e-04
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 352 KFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHDYQI 411
+ +CD M++GLA+ LRC+G+DA + + + + R A++E R++LT + Q+
Sbjct: 354 RVVCDNMLQGLARSLRCLGVDARMLGNGE-DHRRAAEVARQEGRIILTSGQPFHKLRAQV 412
Query: 412 YKVK------SLLKNEQLLEIIETFQLNINEDQLMSRCTKCN 447
+ SL +Q +++ F + + + SRC CN
Sbjct: 413 GAGRCLSVDCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACN 454
>dbj|BAC10986.1| HBE269 [Homo sapiens]
Length = 514
Score = 68.2 bits (165), Expect = 6e-10
Identities = 57/179 (31%), Positives = 87/179 (47%), Gaps = 25/179 (13%)
Query: 34 LVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLP-------LSSIWEPL 86
+VG+D EW PV P SLLQ+A + VFLLD+++L + +
Sbjct: 75 VVGVDVEWTPVFV-AGGRPRPSLLQVAVE----GHVFLLDVLALSQPPTGQGAQAFSRLV 129
Query: 87 REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYL----DITSVYNHLQFKK 142
++L I KLG+ DL L T C P VE + D+ V+ ++
Sbjct: 130 AQLLSDPSITKLGYGMVGDLQKLG-TSC-----PALAHVEKQILGGMDLLLVHRQMRVAS 183
Query: 143 NGRIA---SKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGI 198
A +++ + L+ + ++LG L K Q S+W +RPL EEQ+ YAA DA+CLL +
Sbjct: 184 VPAPAVDRARELRGLTLLVQQVLGTALDKTQQLSNWDRRPLYEEQVIYAAADAYCLLEV 242
Score = 41.2 bits (95), Expect = 0.081
Identities = 25/94 (26%), Positives = 47/94 (49%), Gaps = 7/94 (7%)
Query: 360 EGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHDYQIYKVK---- 415
+GLA+ LRC+G+DA + + + + R A++E R++LT + Q+ +
Sbjct: 290 QGLARSLRCLGVDARMLGNGE-DHRRAAEVARQEGRIILTSGQPFHKLRAQVGAGRCLSV 348
Query: 416 --SLLKNEQLLEIIETFQLNINEDQLMSRCTKCN 447
SL +Q +++ F + + + SRC CN
Sbjct: 349 DCSLKAQQQAKAVLKHFNVRVTHADIFSRCQACN 382
>ref|YP_169783.1| Ribonuclease D [Francisella tularensis subsp. tularensis Schu 4]
gi|56604379|emb|CAG45409.1| Ribonuclease D [Francisella
tularensis subsp. tularensis SCHU S4]
Length = 364
Score = 65.9 bits (159), Expect = 3e-09
Identities = 66/243 (27%), Positives = 107/243 (43%), Gaps = 39/243 (16%)
Query: 21 EFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLS 80
+ ++ L TS + +D E+ +RT+ +P + L+Q+A + +FL+D +
Sbjct: 8 QLNNVIEILKNTSQIAVDTEFYWMRTY---YPELCLVQLATE----NEIFLIDTLK---D 57
Query: 81 SIWEPLREMLVSADILKLGFRFKQDLVYLSSTF-CEQGCNPGFDKVEPYLDITSVYNHLQ 139
++ L+E+ DILK+ D+ + F CE V D L
Sbjct: 58 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCE---------VNNIFDTQLAATFLG 108
Query: 140 FKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIF 199
F+ SL T+ E+L I + KE Q SDW RPLT+ Q+ YA D L+ +
Sbjct: 109 FQTQS--------SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 160
Query: 200 KVFQATVAK-------EGEL--VNKTNILSIRS--ANLGLKELFRKHDTSDKVHSTQFCE 248
+ Q +AK E EL V KT SI + A +G + F + + + Q+ E
Sbjct: 161 EYLQQQLAKSEYQDFFEQELIEVQKTQFNSIENIHAKIGNIQKFDEKTQRNAILIAQWRE 220
Query: 249 ALA 251
+A
Sbjct: 221 TIA 223
>gb|AAW50010.1| hypothetical protein FTT0776 [synthetic construct]
Length = 399
Score = 65.9 bits (159), Expect = 3e-09
Identities = 66/243 (27%), Positives = 107/243 (43%), Gaps = 39/243 (16%)
Query: 21 EFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLDLISLPLS 80
+ ++ L TS + +D E+ +RT+ +P + L+Q+A + +FL+D +
Sbjct: 34 QLNNVIEILKNTSQIAVDTEFYWMRTY---YPELCLVQLATE----NEIFLIDTLK---D 83
Query: 81 SIWEPLREMLVSADILKLGFRFKQDLVYLSSTF-CEQGCNPGFDKVEPYLDITSVYNHLQ 139
++ L+E+ DILK+ D+ + F CE V D L
Sbjct: 84 LEFKKLKEIFEDKDILKIIHSATNDIPIIKRFFNCE---------VNNIFDTQLAATFLG 134
Query: 140 FKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYAAMDAHCLLGIF 199
F+ SL T+ E+L I + KE Q SDW RPLT+ Q+ YA D L+ +
Sbjct: 135 FQTQS--------SLKTLLKEILDIEIEKESQFSDWRNRPLTQNQLNYAIKDVEYLIQLK 186
Query: 200 KVFQATVAK-------EGEL--VNKTNILSIRS--ANLGLKELFRKHDTSDKVHSTQFCE 248
+ Q +AK E EL V KT SI + A +G + F + + + Q+ E
Sbjct: 187 EYLQQQLAKSEYQDFFEQELIEVQKTQFNSIENIHAKIGNIQKFDEKTQRNAILIAQWRE 246
Query: 249 ALA 251
+A
Sbjct: 247 TIA 249
>ref|NP_926693.1| probable ribonuclease D [Gloeobacter violaceus PCC 7421]
gi|35214320|dbj|BAC91688.1| glr3747 [Gloeobacter
violaceus PCC 7421]
Length = 195
Score = 64.3 bits (155), Expect = 9e-09
Identities = 57/208 (27%), Positives = 92/208 (43%), Gaps = 30/208 (14%)
Query: 10 EIHFVTTTDSPEFTHLTRSLTQTSLVGLDAE---WKPVRTHQNSFPTVSLLQIACQLGDD 66
++ +V T++ + + L ++ +D E W V T +N VSLLQ+ G
Sbjct: 5 QVPYVLVTETAQLSELVDRWQTRKVLAVDTETAHWHQVSTGKNR---VSLLQVWD--GTS 59
Query: 67 EVVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVE 126
E V ++D ++ L++ E + + + +I+KL DL YL
Sbjct: 60 EAVSVIDCFAVDLTAFVE---KTMRNWEIVKLIHNAPYDLAYLGGA-------------- 102
Query: 127 PYLDITSVYNHLQFKKN---GRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEE 183
SV LQ ++ R + + SL + LGI L K Q S+W+ RPLT E
Sbjct: 103 --AQARSVVCTLQMARSIPTSRRGALERNSLKALSAHFLGIELDKRYQASNWALRPLTAE 160
Query: 184 QMTYAAMDAHCLLGIFKVFQATVAKEGE 211
Q+ YAA+D I++ +A V E E
Sbjct: 161 QLDYAALDPWVTFHIWEHMRALVEPENE 188
>emb|CAB50219.1| Hypothetical protein [Pyrococcus abyssi GE5]
gi|14521513|ref|NP_126989.1| hypothetical protein
PAB1509 [Pyrococcus abyssi GE5] gi|7518144|pir||F75040
hypothetical protein PAB1509 - Pyrococcus abyssi (strain
Orsay)
Length = 155
Score = 64.3 bits (155), Expect = 9e-09
Identities = 46/146 (31%), Positives = 78/146 (52%), Gaps = 17/146 (11%)
Query: 352 KFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRHDYQI 411
KF+ D+M+ LA+ LR G D + E+I A+KE R++L+RD +L+ ++
Sbjct: 2 KFIADMMLGRLARWLRLYGYDTKYGIK---DDDEIIETAKKEGRIILSRDLELVERAKKL 58
Query: 412 YKVKSLLKNEQLLE--IIETFQLNINEDQLM---SRCTKCNGRFIQKPLSTEEAIEAAKG 466
+K++ +E I + +L I ++L +RC KCNG ++ +S EE KG
Sbjct: 59 -GIKAIFIESNSIEGQIAQLMRLGIEFNELFPEGARCPKCNGIIVR--VSKEEV----KG 111
Query: 467 FQKIPNCLFNKNLEFWQCMDCHQLYW 492
K+P ++ EF+ C +C Q+YW
Sbjct: 112 --KVPEKVYESYDEFYVCTNCGQIYW 135
>emb|CAC12226.1| conserved hypothetical protein [Thermoplasma acidophilum]
gi|16082121|ref|NP_394558.1| hypothetical protein Ta1099
[Thermoplasma acidophilum DSM 1728]
Length = 157
Score = 63.9 bits (154), Expect = 1e-08
Identities = 50/151 (33%), Positives = 77/151 (50%), Gaps = 27/151 (17%)
Query: 348 DGFPKFLCDVMVEGLAKHLRCVGIDAAVPSSKKPEPRELITKAQKEKRVLLTRDAKLLRH 407
DG K D M+ LA+ +R +G D PS P+ E+ITK++ E R+++TRD +
Sbjct: 10 DGEIKLTVDQMLGKLARWIRLMGYDVYYPSGTVPDD-EIITKSRSEGRIIITRDYGM--- 65
Query: 408 DYQIYKVKSLLK-----NEQLLEIIETFQLNINEDQLMSRCTKCNGRFIQKPLSTEEAIE 462
YQ Y + S+ + N+QL + I F + +D+ M RC CNGR +
Sbjct: 66 -YQKYPM-SIFEPYDDINDQLRDFIAHFSSRM-KDRFM-RCPVCNGRLV----------- 110
Query: 463 AAKGFQKIPNCLFNKNLEFWQCMDCHQLYWE 493
K KIP L N + + + C CH++YW+
Sbjct: 111 --KLRSKIPEYLRN-HRDVYICTGCHKMYWK 138
>emb|CAH06690.1| putative 3'-5' exonuclease [Bacteroides fragilis NCTC 9343]
gi|60680496|ref|YP_210640.1| putative 3'-5' exonuclease
[Bacteroides fragilis NCTC 9343]
gi|53712323|ref|YP_098315.1| hypothetical protein BF1031
[Bacteroides fragilis YCH46] gi|52215188|dbj|BAD47781.1|
conserved hypothetical protein [Bacteroides fragilis
YCH46]
Length = 216
Score = 63.5 bits (153), Expect = 2e-08
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 31/198 (15%)
Query: 8 PLEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDE 67
P IH + T E L +++G+D+E +P T +S V+LLQI+ DE
Sbjct: 21 PGRIHVIQTES--EAQKAVAYLQSQAILGIDSETRPSFTKGHSHK-VALLQIS----SDE 73
Query: 68 VVFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLS--STFCEQGCNPGFDKV 125
FL L ++ + +P+ E+L ++K+G K D + L + F +Q C + V
Sbjct: 74 CCFLF---RLNMTGLTQPIIELLEDPKVIKVGLSLKDDFMMLHKRAPFNQQACIELQEYV 130
Query: 126 EPYLDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQM 185
P+ Q+KSL I G L +SK + S+W LT+ Q
Sbjct: 131 RPF-------------------GIQDKSLQKIYGILFSEKISKSQRLSNWEADVLTDAQK 171
Query: 186 TYAAMDAHCLLGIFKVFQ 203
YAA DA L I+ + +
Sbjct: 172 QYAATDAWACLNIYHLLE 189
>gb|AAN70164.1| ribonuclease D [Pseudomonas putida KT2440]
gi|26991275|ref|NP_746700.1| ribonuclease D [Pseudomonas
putida KT2440]
Length = 377
Score = 63.2 bits (152), Expect = 2e-08
Identities = 59/201 (29%), Positives = 92/201 (45%), Gaps = 28/201 (13%)
Query: 9 LEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEV 68
+EIH++ D R Q V +D E+ V T +P L+QI GD +
Sbjct: 3 IEIHWIR--DDQSLAEHCRDWHQLPFVAVDTEFMRVDTF---YPKAGLIQI----GDGQR 53
Query: 69 VFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPY 128
FL+D + L W+PL ++L + ++K+ +DL L + P FD
Sbjct: 54 AFLIDPL---LIGNWQPLADLLEDSAVVKVLHACSEDLEVLLRLTGKLP-QPLFDT---- 105
Query: 129 LDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYA 188
+ + Y +L F + S + E+LGI L K SDW QRPL+E Q++YA
Sbjct: 106 -QLAAGYLNLGF----------SMGYSRLVQEVLGIELPKGETRSDWLQRPLSETQVSYA 154
Query: 189 AMDAHCLLGIFKVFQATVAKE 209
A DA L +F V + ++ +
Sbjct: 155 AEDAVHLAELFTVLRPRLSDD 175
>gb|EAL34566.1| GA21642-PA [Drosophila pseudoobscura]
Length = 625
Score = 62.8 bits (151), Expect = 3e-08
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 24/214 (11%)
Query: 14 VTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLD 73
+T + +F + L + ++ +D+EW ++ + LLQIA V+L+D
Sbjct: 409 ITVDTATQFDLMLGHLQREHIIYMDSEWVQNVCGESQ---LCLLQIATVRN----VYLID 461
Query: 74 LISLP--LSSIWEPL-REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLD 130
++ + W L ++ + +ILK+GF DL L + Q YLD
Sbjct: 462 CLARQSITADHWRALGADVFNNMNILKVGFSMYSDLTVLQRSLPLQ---LRLQLSHHYLD 518
Query: 131 ITSVYNHLQFKK--------NGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTE 182
+ +++ L+ ++ N A LS +C LG L+K QCS+W+ RPL
Sbjct: 519 LRTLWLELKKQRYAIRLPFGNVNRAGDALSDLSLVC---LGKKLNKSNQCSNWANRPLRR 575
Query: 183 EQMTYAAMDAHCLLGIFKVFQATVAKEGELVNKT 216
+Q+ YAA+DA CL+ I+ V ++K+
Sbjct: 576 DQILYAAIDARCLMLIYNTLLNRVPNISTAIDKS 609
>gb|AAF53970.1| CG9247-PA [Drosophila melanogaster] gi|20129683|ref|NP_610094.1|
CG9247-PA [Drosophila melanogaster]
Length = 625
Score = 62.4 bits (150), Expect = 3e-08
Identities = 56/211 (26%), Positives = 96/211 (44%), Gaps = 18/211 (8%)
Query: 14 VTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLD 73
+ + EF + L Q ++ LD+EW N + +LQIA V+L+D
Sbjct: 411 IIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQ---LCVLQIAT----GHNVYLID 463
Query: 74 LISLPL--SSIWEPL-REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLD 130
++ S W L + + +I K+GF DL L + Q YLD
Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLQ---LRLQMPHHYLD 520
Query: 131 ITSVYNHLQFKKNG-----RIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQM 185
+ +++ L+ ++ G ++ +L+ + LG L+K QCS+W+ RPL EQ+
Sbjct: 521 LRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRREQI 580
Query: 186 TYAAMDAHCLLGIFKVFQATVAKEGELVNKT 216
YAA+DA CL+ I+ V+ ++ K+
Sbjct: 581 LYAAIDARCLMLIYNTLIERVSFIQAVIEKS 611
>gb|AAM49831.1| GM01690p [Drosophila melanogaster]
Length = 625
Score = 62.4 bits (150), Expect = 3e-08
Identities = 56/211 (26%), Positives = 96/211 (44%), Gaps = 18/211 (8%)
Query: 14 VTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEVVFLLD 73
+ + EF + L Q ++ LD+EW N + +LQIA V+L+D
Sbjct: 411 IIVNKADEFDRMLYHLQQECVIYLDSEWMQSVCGDNQ---LCVLQIAT----GHNVYLID 463
Query: 74 LISLPL--SSIWEPL-REMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPYLD 130
++ S W L + + +I K+GF DL L + Q YLD
Sbjct: 464 CLARESLRSEHWRLLGANIFNNVNIRKVGFSMVSDLSVLQRSLPLQ---LRLQMPHHYLD 520
Query: 131 ITSVYNHLQFKKNG-----RIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQM 185
+ +++ L+ ++ G ++ +L+ + LG L+K QCS+W+ RPL EQ+
Sbjct: 521 LRNLWLELKKQRFGVELPFGNVNRAGDALTDLSLACLGKKLNKSNQCSNWANRPLRREQI 580
Query: 186 TYAAMDAHCLLGIFKVFQATVAKEGELVNKT 216
YAA+DA CL+ I+ V+ ++ K+
Sbjct: 581 LYAAIDARCLMLIYNTLIERVSFIQAVIEKS 611
>ref|ZP_00263471.1| COG0349: Ribonuclease D [Pseudomonas fluorescens PfO-1]
Length = 377
Score = 62.0 bits (149), Expect = 4e-08
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 9 LEIHFVTTTDSPEFTHLTRSLTQTSLVGLDAEWKPVRTHQNSFPTVSLLQIACQLGDDEV 68
++IH++ DS Q V LD E+ V T +P LLQ+ GD +
Sbjct: 3 IDIHWIRDNDS--LAQFCAEWQQLPFVALDTEFMRVDTF---YPIAGLLQV----GDGKR 53
Query: 69 VFLLDLISLPLSSIWEPLREMLVSADILKLGFRFKQDLVYLSSTFCEQGCNPGFDKVEPY 128
+L+D +++ + W+PL +L + +LK+ +DL L P FD
Sbjct: 54 AYLIDPLTI---NAWQPLAALLENPAVLKVLHACSEDLEVLLRLTGSLPA-PLFDT---- 105
Query: 129 LDITSVYNHLQFKKNGRIASKQNKSLSTICGELLGITLSKELQCSDWSQRPLTEEQMTYA 188
+ + Y +L F + S + E+LGI L K SDW QRPL++ Q++YA
Sbjct: 106 -QLAAAYLNLGF----------SMGYSRLVQEVLGIELPKGETRSDWLQRPLSDTQISYA 154
Query: 189 AMDAHCLLGIF 199
A DA L +F
Sbjct: 155 AEDAVHLAEVF 165
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.136 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 874,080,986
Number of Sequences: 2540612
Number of extensions: 36435728
Number of successful extensions: 84886
Number of sequences better than 10.0: 368
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 84458
Number of HSP's gapped (non-prelim): 408
length of query: 523
length of database: 863,360,394
effective HSP length: 133
effective length of query: 390
effective length of database: 525,458,998
effective search space: 204929009220
effective search space used: 204929009220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 77 (34.3 bits)
Medicago: description of AC141323.9