BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141323.12 + phase: 0 /pseudo
(133 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_463928.1| hypothetical protein [Oryza sativa (japonica cu... 187 6e-47
ref|NP_197821.1| PHD finger family protein / SET domain-containi... 176 1e-43
emb|CAB89351.1| putative protein [Arabidopsis thaliana] gi|11357... 164 3e-40
dbj|BAB09537.1| unnamed protein product [Arabidopsis thaliana] 164 3e-40
gb|AAM52244.1| AT5g09790/F17I14_20 [Arabidopsis thaliana] gi|173... 164 3e-40
ref|NP_914284.1| P0458E05.13 [Oryza sativa (japonica cultivar-gr... 162 2e-39
ref|XP_419941.1| PREDICTED: similar to Integrin beta-1 binding p... 33 2.0
ref|XP_322578.1| predicted protein [Neurospora crassa] gi|289172... 32 3.4
emb|CAA72789.1| hNop56 [Homo sapiens] 32 4.4
gb|AAL94718.1| Exonuclease SBCC [Fusobacterium nucleatum subsp. ... 31 5.8
ref|XP_637730.1| structural maintenance of chromosome protein [D... 31 5.8
ref|YP_081407.1| adenylosuccinate synthetase [Bacillus lichenifo... 31 7.5
emb|CAH02332.1| unnamed protein product [Kluyveromyces lactis NR... 31 7.5
emb|CAF30430.1| SAM (and some other nucleotide) binding motif [M... 31 7.5
emb|CAD43185.1| alpha-aminoadipate reductase [Kluyveromyces lactis] 31 7.5
ref|NP_326532.1| hypothetical protein MYPU_7010 [Mycoplasma pulm... 30 9.8
ref|ZP_00527916.1| Arginyl-tRNA synthetase, class Ic [Chlorobium... 30 9.8
ref|NP_719598.1| hypothetical protein SO4068 [Shewanella oneiden... 30 9.8
gb|AAL85711.1| ABC transporter ABCC.8 [Dictyostelium discoideum] 30 9.8
ref|XP_639904.1| ABC transporter C family protein [Dictyostelium... 30 9.8
>ref|XP_463928.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|41053014|dbj|BAD07945.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 361
Score = 187 bits (474), Expect = 6e-47
Identities = 88/125 (70%), Positives = 106/125 (84%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VL KED ETLNL + MM RGE P L+VV+D EG+TVEAD+ IKDLT+I EYVGD+D+L
Sbjct: 205 VLPKEDVETLNLCKRMMARGEWPPLLVVYDPVEGFTVEADRFIKDLTIITEYVGDVDYLT 264
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
RE+DDGD +MTLLSA+ PS+SLV+ PDKRSNIA FI GI+NHTP+G KKQN+KCVRF++
Sbjct: 265 RREHDDGDSMMTLLSAATPSRSLVICPDKRSNIARFINGINNHTPDGRKKQNLKCVRFDV 324
Query: 128 GGECR 132
GGECR
Sbjct: 325 GGECR 329
>ref|NP_197821.1| PHD finger family protein / SET domain-containing protein
[Arabidopsis thaliana] gi|46402470|gb|AAS92337.1|
At5g24330 [Arabidopsis thaliana]
gi|45773812|gb|AAS76710.1| At5g24330 [Arabidopsis
thaliana]
Length = 349
Score = 176 bits (446), Expect = 1e-43
Identities = 88/126 (69%), Positives = 103/126 (80%), Gaps = 1/126 (0%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VLSKE ETL L + MM+ GECP LMVVFD EG+TVEAD+ IKD T+I EYVGD+D+L
Sbjct: 192 VLSKEGVETLALCKKMMDLGECPPLMVVFDPYEGFTVEADRFIKDWTIITEYVGDVDYLS 251
Query: 68 NREYD-DGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFN 126
NRE D DGD +MTLL AS+PSQ LV+ PD+RSNIA FI+GI+NH+PEG KKQN+KCVRFN
Sbjct: 252 NREDDYDGDSMMTLLHASDPSQCLVICPDRRSNIARFISGINNHSPEGRKKQNLKCVRFN 311
Query: 127 IGGECR 132
I GE R
Sbjct: 312 INGEAR 317
>emb|CAB89351.1| putative protein [Arabidopsis thaliana] gi|11357504|pir||T49919
hypothetical protein F17I14.20 - Arabidopsis thaliana
Length = 379
Score = 164 bits (416), Expect = 3e-40
Identities = 81/125 (64%), Positives = 94/125 (74%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VL KED ETL +SM RGECP L+VVFD EGYTVEAD IKDLT I EY GD+D+LK
Sbjct: 223 VLCKEDLETLEQCQSMYRRGECPPLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDVDYLK 282
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
NRE DD D IMTLL + +PS++LV+ PDK NI+ FI GI+NH P KKQN KCVR++I
Sbjct: 283 NREKDDCDSIMTLLLSEDPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSI 342
Query: 128 GGECR 132
GECR
Sbjct: 343 NGECR 347
>dbj|BAB09537.1| unnamed protein product [Arabidopsis thaliana]
Length = 378
Score = 164 bits (416), Expect = 3e-40
Identities = 81/125 (64%), Positives = 94/125 (74%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VL KED ETL +SM RGECP L+VVFD EGYTVEAD IKDLT I EY GD+D+LK
Sbjct: 222 VLCKEDLETLEQCQSMYRRGECPPLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDVDYLK 281
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
NRE DD D IMTLL + +PS++LV+ PDK NI+ FI GI+NH P KKQN KCVR++I
Sbjct: 282 NREKDDCDSIMTLLLSEDPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSI 341
Query: 128 GGECR 132
GECR
Sbjct: 342 NGECR 346
>gb|AAM52244.1| AT5g09790/F17I14_20 [Arabidopsis thaliana]
gi|17381240|gb|AAL36039.1| AT5g09790/F17I14_20
[Arabidopsis thaliana] gi|22326695|ref|NP_196541.2| PHD
finger family protein / SET domain-containing protein
[Arabidopsis thaliana]
Length = 352
Score = 164 bits (416), Expect = 3e-40
Identities = 81/125 (64%), Positives = 94/125 (74%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
VL KED ETL +SM RGECP L+VVFD EGYTVEAD IKDLT I EY GD+D+LK
Sbjct: 196 VLCKEDLETLEQCQSMYRRGECPPLVVVFDPLEGYTVEADGPIKDLTFIAEYTGDVDYLK 255
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
NRE DD D IMTLL + +PS++LV+ PDK NI+ FI GI+NH P KKQN KCVR++I
Sbjct: 256 NREKDDCDSIMTLLLSEDPSKTLVICPDKFGNISRFINGINNHNPVAKKKQNCKCVRYSI 315
Query: 128 GGECR 132
GECR
Sbjct: 316 NGECR 320
>ref|NP_914284.1| P0458E05.13 [Oryza sativa (japonica cultivar-group)]
gi|21902065|dbj|BAC05613.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 385
Score = 162 bits (409), Expect = 2e-39
Identities = 76/123 (61%), Positives = 96/123 (77%)
Query: 8 VLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYVGDIDFLK 67
+L KED ET+ L R+M +RGECP L+VVFD EG+TV+AD IKD+T I EY GD+DFL+
Sbjct: 229 ILPKEDKETIELCRTMQKRGECPPLLVVFDSREGFTVQADADIKDMTFIAEYTGDVDFLE 288
Query: 68 NREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTPEGNKKQNMKCVRFNI 127
NR DDGD IMTLL +PS+ LV+ PDKR NI+ FI GI+NHT +G KK+N+KCVR++I
Sbjct: 289 NRANDDGDSIMTLLLTEDPSKRLVICPDKRGNISRFINGINNHTLDGKKKKNIKCVRYDI 348
Query: 128 GGE 130
GE
Sbjct: 349 DGE 351
>ref|XP_419941.1| PREDICTED: similar to Integrin beta-1 binding protein 1 (Integrin
cytoplasmic domain-associated protein 1) (ICAP-1)
[Gallus gallus]
Length = 208
Score = 32.7 bits (73), Expect = 2.0
Identities = 16/49 (32%), Positives = 29/49 (58%)
Query: 58 EYVGDIDFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITG 106
+YVG I+ LK+ E + + + L++ + +Q+ V FP K+ PF+ G
Sbjct: 66 KYVGAIEKLKHNESKNLEGPLDLINYIDVAQAFVCFPPKQDGKLPFVPG 114
>ref|XP_322578.1| predicted protein [Neurospora crassa] gi|28917228|gb|EAA26941.1|
predicted protein [Neurospora crassa]
Length = 994
Score = 32.0 bits (71), Expect = 3.4
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 38 HAEGYTVEADKSIKDLTVIREYVGDIDFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKR 97
H E E D D TV E +GD D + DDG+ + + S +++ D R
Sbjct: 610 HEEAEAEEQDDHEIDRTVGAEELGD-DLTLRQTLDDGNFSLDITEGSTEGNAVLGRDDNR 668
Query: 98 SNIAPFITGIDNHTP 112
+ PF+ H P
Sbjct: 669 TGKYPFLFSSPTHNP 683
>emb|CAA72789.1| hNop56 [Homo sapiens]
Length = 602
Score = 31.6 bits (70), Expect = 4.4
Identities = 14/38 (36%), Positives = 25/38 (64%)
Query: 23 MMERGECPLLMVVFDHAEGYTVEADKSIKDLTVIREYV 60
M RG LL V+F+HA GY + A K ++++++++ V
Sbjct: 1 MAGRGAMVLLHVLFEHAVGYALVALKEVEEISLLQPQV 38
>gb|AAL94718.1| Exonuclease SBCC [Fusobacterium nucleatum subsp. nucleatum ATCC
25586] gi|19703857|ref|NP_603419.1| Exonuclease SBCC
[Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
Length = 921
Score = 31.2 bits (69), Expect = 5.8
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 9 LSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVEADKSIKDLTV--------IREYV 60
+ KED E NL +++ E+ + + VVF+ + E +KSIKDL + ++E
Sbjct: 495 IKKEDLE--NLKKNIKEKTQILVEKVVFEDKKKQYFELEKSIKDLEISLKNEEINLKEIE 552
Query: 61 GDI--------DFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDNHTP 112
DI ++N+E+ + + + + +KR N+ + ++
Sbjct: 553 LDIKNLDIDIQKLIENQEFQNSQMLREKKTELEVELRNLNLDEKRENLKNILENLEIEKE 612
Query: 113 EGNKKQN 119
+ K QN
Sbjct: 613 KILKNQN 619
>ref|XP_637730.1| structural maintenance of chromosome protein [Dictyostelium
discoideum] gi|60466163|gb|EAL64226.1| structural
maintenance of chromosome protein [Dictyostelium
discoideum]
Length = 1415
Score = 31.2 bits (69), Expect = 5.8
Identities = 17/86 (19%), Positives = 43/86 (49%), Gaps = 8/86 (9%)
Query: 44 VEADKSIKDLTVIREYVGD--------IDFLKNREYDDGDRIMTLLSASNPSQSLVVFPD 95
++A K++++I Y+ + I L+N ++ DR++ + N ++S+ + P+
Sbjct: 1320 IDAALDFKNVSIIANYIKERTKNAQFIIISLRNYMFELADRLVGIYKTDNCTKSVTINPN 1379
Query: 96 KRSNIAPFITGIDNHTPEGNKKQNMK 121
++++ T +N + +KQ K
Sbjct: 1380 SFTSLSTTTTTTNNSQQQQQQKQQQK 1405
>ref|YP_081407.1| adenylosuccinate synthetase [Bacillus licheniformis ATCC 14580]
gi|52005827|gb|AAU25769.1| adenylosuccinate synthetase
[Bacillus licheniformis ATCC 14580]
gi|52788013|ref|YP_093842.1| PurA [Bacillus
licheniformis ATCC 14580] gi|52350515|gb|AAU43149.1|
PurA [Bacillus licheniformis DSM 13]
Length = 430
Score = 30.8 bits (68), Expect = 7.5
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 5 ISHVLSKEDFETLNLSRSMMERGECPLLMVVFDHAEGYTVE--ADKSIKDLTVIREYVGD 62
I+ +L ++ FE L+R++ E+ LL ++D AEG+ +E D+ + I++YV D
Sbjct: 147 IADLLDRDVFEE-KLARNLEEKNR--LLEKMYD-AEGFKIEDILDEYYEYGQQIKQYVCD 202
Query: 63 IDFLKNREYDDGDRIM 78
+ N DDG R++
Sbjct: 203 TSVVLNDALDDGRRVL 218
>emb|CAH02332.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
gi|50303979|ref|XP_451939.1| unnamed protein product
[Kluyveromyces lactis]
Length = 1385
Score = 30.8 bits (68), Expect = 7.5
Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 16/68 (23%)
Query: 56 IREYVGDIDFLKNREYDDGDRIMT-------------LLSASNPSQSLVVFPDK---RSN 99
IR + G++D +KN +GD I T +L PS+ P+ + N
Sbjct: 904 IRAFAGEVDRVKNSSSSEGDEIKTADYANDAKKLVDSMLPTEYPSREAFADPESLSAKKN 963
Query: 100 IAPFITGI 107
I F+TG+
Sbjct: 964 INVFVTGV 971
>emb|CAF30430.1| SAM (and some other nucleotide) binding motif [Methanococcus
maripaludis S2] gi|45358437|ref|NP_987994.1| SAM (and
some other nucleotide) binding motif [Methanococcus
maripaludis S2]
Length = 265
Score = 30.8 bits (68), Expect = 7.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 42 YTVEADKSIKDLTVIREYVGDIDFLKNR 69
YT+ + +K++TV+ + G ID LKNR
Sbjct: 55 YTMPLAREVKEITVVEQSTGMIDILKNR 82
>emb|CAD43185.1| alpha-aminoadipate reductase [Kluyveromyces lactis]
Length = 1384
Score = 30.8 bits (68), Expect = 7.5
Identities = 19/68 (27%), Positives = 30/68 (43%), Gaps = 16/68 (23%)
Query: 56 IREYVGDIDFLKNREYDDGDRIMT-------------LLSASNPSQSLVVFPDK---RSN 99
IR + G++D +KN +GD I T +L PS+ P+ + N
Sbjct: 903 IRAFAGEVDRVKNSSSSEGDEIKTADYANDAKKLVDSMLPTEYPSREAFADPESLSAKKN 962
Query: 100 IAPFITGI 107
I F+TG+
Sbjct: 963 INVFVTGV 970
>ref|NP_326532.1| hypothetical protein MYPU_7010 [Mycoplasma pulmonis UAB CTIP]
gi|14090116|emb|CAC13874.1| unknown; predicted coding
region [Mycoplasma pulmonis] gi|25392819|pir||E90599
hypothetical protein MYPU_7010 [imported] - Mycoplasma
pulmonis (strain UAB CTIP)
Length = 214
Score = 30.4 bits (67), Expect = 9.8
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 63 IDFLKNREYDDGDRIMTLLSASNPSQSLVVFPDKRSNIAPFITGIDN 109
I ++KN Y D I T+ S+ NP+ + F D SN++ G N
Sbjct: 92 ISWVKNNRYSYVDLIPTIKSSENPNSDSLNFIDGNSNVSQNFFGTYN 138
>ref|ZP_00527916.1| Arginyl-tRNA synthetase, class Ic [Chlorobium phaeobacteroides DSM
266] gi|67776083|gb|EAM35744.1| Arginyl-tRNA synthetase,
class Ic [Chlorobium phaeobacteroides DSM 266]
Length = 551
Score = 30.4 bits (67), Expect = 9.8
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 8/75 (10%)
Query: 38 HAEGYTVEADKSIKDLTVIREYVGDID----FLKNREYDDGDRIMTLLSASNPSQSLVVF 93
H EG A++ + DL ++++G+ D FL +R + D+++ + S+ PS L
Sbjct: 256 HREGSGQSANEEVIDLLREKQFIGEYDGATWFLTSRIGQEKDKVL-IKSSGEPSYRL--- 311
Query: 94 PDKRSNIAPFITGID 108
PD +I F G D
Sbjct: 312 PDIAYHITKFKRGYD 326
>ref|NP_719598.1| hypothetical protein SO4068 [Shewanella oneidensis MR-1]
gi|24350437|gb|AAN57042.1| hypothetical protein
[Shewanella oneidensis MR-1]
Length = 702
Score = 30.4 bits (67), Expect = 9.8
Identities = 14/29 (48%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 5 ISHVLSKEDFETLNL--SRSMMERGECPL 31
I+H+L E+++TLN+ S S+ E+GE PL
Sbjct: 375 ITHILVTENYKTLNIAWSSSLKEKGEVPL 403
>gb|AAL85711.1| ABC transporter ABCC.8 [Dictyostelium discoideum]
Length = 1593
Score = 30.4 bits (67), Expect = 9.8
Identities = 29/95 (30%), Positives = 40/95 (41%), Gaps = 10/95 (10%)
Query: 29 CPLLMVVFDHAEGYTVEADKSI--KDLTVIREYVGDIDFLKNREYDDGDRIMTLLSASNP 86
C ++ HA Y D+ I KD ++ E GD + L + G L+S
Sbjct: 768 CNKTRILVTHAVHYLPYVDRIILMKDGRIVEE--GDFNTL----IEAGSHFTELMSHDEQ 821
Query: 87 SQSLVV--FPDKRSNIAPFITGIDNHTPEGNKKQN 119
Q L PDK S+ I G DN E N++QN
Sbjct: 822 QQQLQQQQAPDKSSDSNEQIGGGDNKESENNEEQN 856
>ref|XP_639904.1| ABC transporter C family protein [Dictyostelium discoideum]
gi|60466853|gb|EAL64897.1| ABC transporter C family
protein [Dictyostelium discoideum]
Length = 1593
Score = 30.4 bits (67), Expect = 9.8
Identities = 29/95 (30%), Positives = 40/95 (41%), Gaps = 10/95 (10%)
Query: 29 CPLLMVVFDHAEGYTVEADKSI--KDLTVIREYVGDIDFLKNREYDDGDRIMTLLSASNP 86
C ++ HA Y D+ I KD ++ E GD + L + G L+S
Sbjct: 768 CNKTRILVTHAVHYLPYVDRIILMKDGRIVEE--GDFNTL----IEAGSHFTELMSHDEQ 821
Query: 87 SQSLVV--FPDKRSNIAPFITGIDNHTPEGNKKQN 119
Q L PDK S+ I G DN E N++QN
Sbjct: 822 QQQLQQQQAPDKSSDSNEQIGGGDNKESENNEEQN 856
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.137 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 216,655,047
Number of Sequences: 2540612
Number of extensions: 7900107
Number of successful extensions: 16818
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16807
Number of HSP's gapped (non-prelim): 21
length of query: 133
length of database: 863,360,394
effective HSP length: 109
effective length of query: 24
effective length of database: 586,433,686
effective search space: 14074408464
effective search space used: 14074408464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 67 (30.4 bits)
Medicago: description of AC141323.12