BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.8 - phase: 0 /pseudo
(779 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 577 e-163
gb|AAO45752.1| pol protein [Cucumis melo] 546 e-154
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 534 e-150
gb|AAT66771.1| putative polyprotein [Solanum demissum] 531 e-149
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 516 e-145
gb|AAL59229.1| gag-pol [Zea mays] 516 e-144
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 515 e-144
ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cu... 515 e-144
ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultiv... 514 e-144
ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultiv... 514 e-144
gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cult... 514 e-144
emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar... 513 e-144
gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cult... 513 e-144
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 513 e-144
gb|AAV32172.1| putative polyprotein [Oryza sativa (japonica cult... 513 e-144
emb|CAD39363.2| OSJNBa0059H15.14 [Oryza sativa (japonica cultiva... 513 e-143
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 513 e-143
emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar... 512 e-143
gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cul... 511 e-143
gb|AAP51922.1| putative polyprotein [Oryza sativa (japonica cult... 511 e-143
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 577 bits (1487), Expect = e-163
Identities = 282/436 (64%), Positives = 350/436 (79%), Gaps = 2/436 (0%)
Query: 251 KANVVADALSRKTLHMSAM-MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSI 309
KANVVADALSR+++ +S++ M R+ EL E FRD+ L E+ P +K GM+KI S L+ I
Sbjct: 220 KANVVADALSRRSVSVSSLIMARQQELWEAFRDLHLNVEFAPGILKFGMIKISSGLLEDI 279
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+Q DDV + Q + +FKI VLR GRIC+P+ ++K ILEE+H+S L
Sbjct: 280 ANSQ-DDVLIQEKRNLIVQGKTTEFKIGADNVLRCNGRICVPEITAMRKTILEEAHKSKL 338
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPGATKMY DL++ +W G+K+ VA++V +CL CQ++KVEHQ+PAGM+ PLD+ EWKW
Sbjct: 339 SIHPGATKMYQDLRQNYWWPGMKKHVAEYVSTCLTCQKAKVEHQRPAGMLQPLDIPEWKW 398
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
DSISMDF+T LP T R +D+IWVIVDRLTKSAHFLP+ ++ V QL EIYI EIV+LHGV
Sbjct: 399 DSISMDFITGLPKTRRKNDSIWVIVDRLTKSAHFLPVRTTYKVDQLTEIYIAEIVRLHGV 458
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
PSSIVSDRDP+FTS FW +L EALG+KLRLSSAYHPQTDGQ+ERT QSLEDLLR CVL+
Sbjct: 459 PSSIVSDRDPKFTSHFWGALHEALGTKLRLSSAYHPQTDGQTERTNQSLEDLLRACVLDD 518
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
G+WD LPLIEFTYNNS+H+SIGMA ++ALYGR+C+TPLCW++ E +++GPE+VQQTT
Sbjct: 519 RGSWDHVLPLIEFTYNNSFHTSIGMAPYQALYGRKCQTPLCWYKDGENMIVGPEMVQQTT 578
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
KV+ I+EKMK SQ RQKSY DKRR+ LEF++GDH+FLRVTP TGVGRALKSKKLTPKFI
Sbjct: 579 AKVKKIKEKMKTSQDRQKSYADKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPKFI 638
Query: 670 GPYHILERVGTVAYRV 685
GPY I R+G VAYR+
Sbjct: 639 GPYQIYARIGPVAYRI 654
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 546 bits (1408), Expect = e-154
Identities = 269/529 (50%), Positives = 362/529 (67%), Gaps = 1/529 (0%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIK 310
KANVVADALSRK H +A++ R+ L + +++L L + + I
Sbjct: 393 KANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVLVGAVTMQLAQLTVQPTLRQRII 452
Query: 311 EAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLS 370
+AQ +D V+ + + +F + G L F R+C+P + +K +L E+H S S
Sbjct: 453 DAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLLFERRLCVPSDSAVKTELLSEAHSSPFS 512
Query: 371 IHPGATKMYHDLKKIFWGS-GLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
+HPG+T+ + F G +KR+VA+FV CLVCQ+ K QKPAG++ PL + EWKW
Sbjct: 513 MHPGSTEDVSGPEAGFIGGRNMKREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPEWKW 572
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
+++SMDF+T LP T RG IWV+VDRLTKSAHF+P ++ ++ A++Y+ EIV+LHGV
Sbjct: 573 ENVSMDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGV 632
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P SIVSDRD RFTS+FWK LQ A+G++L S+A+HPQTDGQ+ER Q LED+LR C LE
Sbjct: 633 PVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEF 692
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
G+WDSHL L+EF YNNSY ++IGMA FEALYGR CR+P+CW E E+ ++GPE+VQ T
Sbjct: 693 PGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTN 752
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
E +Q IR +M +QSRQKSY D RRKDLEF+ GD +FL+V PM GV R + KL+P+F+
Sbjct: 753 EAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFV 812
Query: 670 GPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVET 729
GP+ ILER+G VAYR+ LPP LS +H+VFHVS LRKYVPDPSHV+ + +++ +NL+
Sbjct: 813 GPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVE 872
Query: 730 LPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P+ + R VKTLR K+IPLV+V+W E TWE E M YP LF
Sbjct: 873 QPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 534 bits (1375), Expect = e-150
Identities = 256/532 (48%), Positives = 376/532 (70%), Gaps = 4/532 (0%)
Query: 251 KANVVADALSRKTLHMSAMMVR-EFELLEQFRDMSLVCEWTPQSVKLGML---KIDSEFL 306
KANVVAD+LSR ++ + + EL + ++ + S + G+ K +S +
Sbjct: 1064 KANVVADSLSRLSMGSTTHIEEGRRELAKDMHRLACLGVRFTDSTEGGIAVTSKAESSLM 1123
Query: 307 KSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHR 366
+KE Q D ++L + + F+ GVLR++GR+C+P + +++ ++EE+H
Sbjct: 1124 SEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLCVPMVDGLQERVMEEAHS 1183
Query: 367 SSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLE 426
S S+HPG+TKMY DL++ +W +G+K+ +A+FV C CQ+ KVEHQ+P G+ +++ E
Sbjct: 1184 SRYSVHPGSTKMYRDLREFYWWNGMKKGIAEFVAKCPNCQQVKVEHQRPGGLAQNIELPE 1243
Query: 427 WKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKL 486
WKW+ I+MDF+T LP + R D+IWVIVDR+TKSAHFLP+ + A++YI+EIV+L
Sbjct: 1244 WKWEMINMDFITGLPRSRRQHDSIWVIVDRMTKSAHFLPVKTTHSAEDYAKLYIQEIVRL 1303
Query: 487 HGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICV 546
HGVP SI+SDR +FT++FWKS Q+ LGSK+ LS+A+HPQTDGQ+ERTIQ+LED+LR CV
Sbjct: 1304 HGVPISIISDRGAQFTAQFWKSFQKGLGSKVSLSTAFHPQTDGQAERTIQTLEDMLRACV 1363
Query: 547 LEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQ 606
++ WD HLPLIEF YNNSYHSSI MA +EALYGRRCR+P+ WFE E ++GP++V
Sbjct: 1364 IDFKSNWDDHLPLIEFAYNNSYHSSIQMAPYEALYGRRCRSPIGWFEVGEARLIGPDLVH 1423
Query: 607 QTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTP 666
Q EKV++I+E++K +QSRQKSY D RR+ LEF+ D ++L+V+PM GV R K KL+P
Sbjct: 1424 QAMEKVKVIQERLKTAQSRQKSYTDVRRRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSP 1483
Query: 667 KFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLT 726
++IGPY I++RVG+VAY + LP L+ +H VFH+S L+K + DPS ++ ++ V+++DNL+
Sbjct: 1484 RYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISMLKKCIGDPSLILPTESVKIKDNLS 1543
Query: 727 VETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
E +P++I DR+V+ LR K++ V+V+W E TWE E M + YP LF
Sbjct: 1544 YEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 531 bits (1369), Expect = e-149
Identities = 269/538 (50%), Positives = 364/538 (67%), Gaps = 14/538 (2%)
Query: 251 KANVVADALSRKTLHMSAMMVREFEL------LEQFRDMSLVCEWTPQSVKLGMLKIDSE 304
KANVVADALSRK + M ++ E ++ + + + + L +++ S
Sbjct: 1230 KANVVADALSRKAVSMGSLAFLSVEERPLALDIQSLANSMVRLDISDSRCVLAFMRVQSS 1289
Query: 305 FLKSIKEAQRDDVKFVDLLVA-RDQTEDID---FKIDDQGVLRFRGRICIPDNEEIKKMI 360
L I+ Q +D D LVA RD+ D +D GVL+F GRIC+P ++ ++I
Sbjct: 1290 LLDRIRGCQFED----DTLVALRDRVLADDGGQATLDPDGVLKFAGRICVPRVGDLIQLI 1345
Query: 361 LEESHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMV 420
L E+H S SIHPG KMY DL++ +W SG++RD+A FV CL CQ+ K EH +P G
Sbjct: 1346 LSEAHESRYSIHPGTAKMYRDLRQHYWWSGMRRDIADFVSRCLCCQQVKAEHLRPGGEFQ 1405
Query: 421 PLDVLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYI 480
L + EWKW+ I+MDFV LP T RG D+IWVIVDRLTKSAHFLP++ +F +LA IYI
Sbjct: 1406 RLPIPEWKWERITMDFVVGLPRTSRGVDSIWVIVDRLTKSAHFLPVHTTFSAERLARIYI 1465
Query: 481 KEIVKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLED 540
+E+V+LHGVP SI+SDR +FTS FW++ QE LG+++ LS+++HPQTDGQSERTIQ LED
Sbjct: 1466 REVVRLHGVPVSIISDRGSQFTSSFWRAFQEELGTRVHLSTSFHPQTDGQSERTIQVLED 1525
Query: 541 LLRICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVL 600
+LR CV++ GG W+ LPL EF YNNSYHSSI MA FEALYGRRCR+P+ WFES E
Sbjct: 1526 MLRACVMDFGGQWEQFLPLAEFAYNNSYHSSIQMAPFEALYGRRCRSPVGWFESTEPRPR 1585
Query: 601 GPEIVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALK 660
G +++Q+ ++V++I+++++ +QSR +SY D+RR+ L F GD +FLRV+PM GV R +
Sbjct: 1586 GTDLLQEALDQVRVIQDRLRTAQSRHQSYADQRRRPLRFSVGDRVFLRVSPMKGVMRFGR 1645
Query: 661 SKKLTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQ 720
KL+P++IGP+ IL VG VAY + LPP S +H VFHVS LR+YVPD SHV+Q D V+
Sbjct: 1646 RGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVSMLRRYVPDESHVLQYDAVE 1705
Query: 721 VRDNLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
+ D LT P+ I R V+ LR + IP+V+V W E TWE E +M E +P LF
Sbjct: 1706 LDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHRPVEEATWETEQEMREQFPSLF 1763
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 516 bits (1330), Expect = e-145
Identities = 251/526 (47%), Positives = 356/526 (66%), Gaps = 4/526 (0%)
Query: 251 KANVVADALSRKTL-HMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSI 309
KANVVADALSRK +++ + + +L + + L QS L + I
Sbjct: 488 KANVVADALSRKAYCNIAQIRPDQGQLCRELEKLRLT---VVQSGVPASLTVQPTLESQI 544
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+EAQ++D +L+ + +D +F IDDQG + + RIC+P +E++ +IL+E+H S+
Sbjct: 545 REAQKEDEGIKELIERIQEKKDTNFSIDDQGTVWYGPRICVPAKKELRDLILKEAHESAY 604
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL + EWKW
Sbjct: 605 SIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKW 664
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
+ I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ ++ +LAE+Y+ +V G
Sbjct: 665 EEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHVVCRFGC 724
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 725 PKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACALDF 784
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
GTWD LP EF+YNNSY +SI M+ EA++GRRCRTPLCW E E +V GP+I++
Sbjct: 785 EGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRRCRTPLCWNEVGEALVFGPDILKSAE 844
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
E+V++IRE++K +Q+RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S KL P++I
Sbjct: 845 EQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYI 904
Query: 670 GPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVET 729
GPY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++ NLT +
Sbjct: 905 GPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKE 964
Query: 730 LPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 965 RPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFP 1010
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 516 bits (1329), Expect = e-144
Identities = 261/535 (48%), Positives = 362/535 (66%), Gaps = 14/535 (2%)
Query: 251 KANVVADALSRK------TLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSE 304
KANVVADALSRK T H+ + EL + ++L +V+ +++++S
Sbjct: 941 KANVVADALSRKGQVNNITTHLMSQ-----ELCWEMERLNL---GFLNNVEATVMEVEST 992
Query: 305 FLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEES 364
+ I++ Q D K ++ + DF D+QG + F+ RIC+P+ E ++++IL E+
Sbjct: 993 LEEEIRKGQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPEIEHLRQLILREA 1052
Query: 365 HRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDV 424
H S+ SIHPG+TKMY DLK+ +W GLKRDVA V C VCQ K EHQ+PAG++ PL V
Sbjct: 1053 HDSAYSIHPGSTKMYQDLKEKYWWYGLKRDVATHVALCDVCQRVKAEHQRPAGLLQPLKV 1112
Query: 425 LEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIV 484
EWKW+ ISMDF+ LP T G D+IWVIVDRLTK AHF+P+ ++ AQLAE+Y+ IV
Sbjct: 1113 PEWKWEEISMDFIVGLPRTRDGYDSIWVIVDRLTKVAHFIPVKTTYSGAQLAELYMSRIV 1172
Query: 485 KLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRI 544
LHGVP IVSDR +FTSRFWK L E++ +KL SSAYHPQTDGQ+ERT Q LED+LR
Sbjct: 1173 CLHGVPKKIVSDRGTQFTSRFWKRLHESMDTKLNFSSAYHPQTDGQTERTNQVLEDMLRA 1232
Query: 545 CVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEI 604
C L+ G +WD LP EF+YNNSY +S+ MA FEALYGR+CRTPL W ++ E V GPEI
Sbjct: 1233 CALKHGRSWDKSLPYAEFSYNNSYQASLKMAPFEALYGRKCRTPLYWNQTGESQVFGPEI 1292
Query: 605 VQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKL 664
+Q+ ++VQ+IRE +K +QSRQKSY D RR++L F+ GD ++L+V+PM G+ R KL
Sbjct: 1293 LQEAEKQVQIIRENLKTAQSRQKSYADNRRRELMFEVGDFVYLKVSPMRGMKRFKVKGKL 1352
Query: 665 TPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDN 724
+P++IGP+ ILER G VAY++ LP LS++H+VFHVSQL+K + P + +++ V ++
Sbjct: 1353 SPRYIGPFKILERKGEVAYQLELPDRLSDVHDVFHVSQLKKCLRVPEEQLPMEELNVNED 1412
Query: 725 LTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LFT 779
LT P+RI + + R K I + +V WS + + TWE E ++ +P LF+
Sbjct: 1413 LTYSEYPVRILETSRRITRSKVINMCKVQWSHHSEDEATWEREDELRAEFPQLFS 1467
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 515 bits (1327), Expect = e-144
Identities = 255/532 (47%), Positives = 355/532 (65%), Gaps = 16/532 (3%)
Query: 251 KANVVADALSRKTLHMSAM-------MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDS 303
KANVVADALSRK A + RE E L +++V P S L +
Sbjct: 1325 KANVVADALSRKAYCNIAQIRPDQDHLCRELEKLR----LTVVQSGVPAS-----LTVQP 1375
Query: 304 EFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEE 363
I+EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E
Sbjct: 1376 TLESQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTIWCGPRICVPAKKELRNLILKE 1435
Query: 364 SHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLD 423
+H S+ SIHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL
Sbjct: 1436 AHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLP 1495
Query: 424 VLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
+ EWKW+ I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ ++ +LAE+Y+ +
Sbjct: 1496 IPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHV 1555
Query: 484 VKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLR 543
V G P IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR
Sbjct: 1556 VCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLR 1615
Query: 544 ICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPE 603
C L+ GTWD LP EF+YNNSY +SI M+ EA++GRRCRTPLCW E E +V GP+
Sbjct: 1616 ACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRRCRTPLCWNEVGEALVFGPD 1675
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKK 663
I++ E+V++IRE+++ +Q+RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S K
Sbjct: 1676 ILKSAEEQVKLIRERLRTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGK 1735
Query: 664 LTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRD 723
L P++IGPY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++
Sbjct: 1736 LAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK 1795
Query: 724 NLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
NLT + P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 1796 NLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFP 1847
>ref|XP_475847.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|47900493|gb|AAT39250.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1688
Score = 515 bits (1326), Expect = e-144
Identities = 255/532 (47%), Positives = 354/532 (65%), Gaps = 16/532 (3%)
Query: 251 KANVVADALSRKTLHMSAM-------MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDS 303
KANVVADALSRK A + RE E L +++V P S L +
Sbjct: 1162 KANVVADALSRKAYCNVAQIRPDQDHLCRELEKLR----LTVVQSGVPAS-----LTVQP 1212
Query: 304 EFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEE 363
I+EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E
Sbjct: 1213 TLESQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGSRICVPAKKELRDLILKE 1272
Query: 364 SHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLD 423
+H S+ SIHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL
Sbjct: 1273 AHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLP 1332
Query: 424 VLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
+ EWKW+ I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ ++ +LAE+Y+ +
Sbjct: 1333 IPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHV 1392
Query: 484 VKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLR 543
V G P IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR
Sbjct: 1393 VCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLR 1452
Query: 544 ICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPE 603
C L+ GTWD LP EF+YNNSY +SI M+ EA++GR+CRTPLCW E E +V GP+
Sbjct: 1453 ACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWNEVGEALVFGPD 1512
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKK 663
I++ E+V++IRE++K +Q RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S K
Sbjct: 1513 ILKSAEEQVKLIRERLKTAQDRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGK 1572
Query: 664 LTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRD 723
L P++IGPY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++
Sbjct: 1573 LAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK 1632
Query: 724 NLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
NLT + P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 1633 NLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAKFP 1684
>ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultivar-group)]
gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 514 bits (1325), Expect = e-144
Identities = 255/532 (47%), Positives = 355/532 (65%), Gaps = 16/532 (3%)
Query: 251 KANVVADALSRKTLHMSAM-------MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDS 303
KANVVADALSRK A + RE E L +++V P S L +
Sbjct: 1325 KANVVADALSRKAYCNVAQIRPDQDHLCRELEKLR----LTVVQSGVPAS-----LTVQP 1375
Query: 304 EFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEE 363
I+EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E
Sbjct: 1376 TLESQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKE 1435
Query: 364 SHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLD 423
+H S+ SIHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL
Sbjct: 1436 AHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLP 1495
Query: 424 VLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
+ EWKW+ I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ ++ +LAE+Y+ +
Sbjct: 1496 IPEWKWEEIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHV 1555
Query: 484 VKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLR 543
V G P IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR
Sbjct: 1556 VCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLR 1615
Query: 544 ICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPE 603
C L+ GTWD LP EF+YNNSY +SI M+ EA++GR+CRTPLCW E E +V GP+
Sbjct: 1616 ACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWDEVGEALVFGPD 1675
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKK 663
I++ E+V++IRE++K +Q+RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S K
Sbjct: 1676 ILKSAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGK 1735
Query: 664 LTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRD 723
L P++IGPY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++
Sbjct: 1736 LAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK 1795
Query: 724 NLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
NLT + P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 1796 NLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFP 1847
>ref|XP_472517.1| OSJNBa0011E07.12 [Oryza sativa (japonica cultivar-group)]
gi|38346366|emb|CAE04203.2| OSJNBa0011E07.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1473
Score = 514 bits (1324), Expect = e-144
Identities = 256/530 (48%), Positives = 362/530 (68%), Gaps = 6/530 (1%)
Query: 251 KANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKS 308
KANVVADALSRK + +A R+ EL ++F ++L + L+ +
Sbjct: 936 KANVVADALSRKG-YCNATEGRQLPLELCKEFERLNL---GIVSRGFVAALEAKPTLIDQ 991
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
++EAQ +D ++ + + I F D+QG + RIC+PDN+++K IL+E+H +
Sbjct: 992 VREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKEAHDTL 1051
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHPG+TKMY DLK+ FW + +KR++A++V C VCQ K EHQKPAG++ PL + EWK
Sbjct: 1052 YSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWK 1111
Query: 429 WDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
W+ I MDF+TSLP T G D+IWVIVDRLTK AHF+P+ ++ ++LAE+Y+ IV LHG
Sbjct: 1112 WEEIGMDFITSLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHG 1171
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
VP IVSDR +FTS FWK LQE +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1172 VPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALD 1231
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
GG+WD +LP EF+YNNSY +S+ MA +EALYGR+CRTPL W ++ ER V G +I+++
Sbjct: 1232 FGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREA 1291
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+++LRVTP+ GV R KL P+F
Sbjct: 1292 EEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVRRFHTKGKLAPRF 1351
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GPY I+ R G VAY++ LP L+ +HNVFHVSQL+K + P+ + ++V+++LT
Sbjct: 1352 VGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYV 1411
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P+RI + + R + I +V WS + E TWE E ++ ++P LF
Sbjct: 1412 EKPIRILEINERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1461
>gb|AAP52480.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531782|ref|NP_920193.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657010|gb|AAL78097.1| Putative polyprotein [Oryza
sativa]
Length = 1473
Score = 514 bits (1323), Expect = e-144
Identities = 255/530 (48%), Positives = 361/530 (68%), Gaps = 6/530 (1%)
Query: 251 KANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKS 308
KANVVADALSRK + +A R+ EL ++F ++L + L+ +
Sbjct: 936 KANVVADALSRKG-YCNATEGRQLPLELCKEFERLNL---GIVSRGFVAALEAKPTLIDQ 991
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
++EAQ +D ++ R + + I F D+ G + RIC+PDN+++K IL+E+H +
Sbjct: 992 VREAQINDPDIQEIKKNRRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAHDTL 1051
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHPG+TKMY DLKK FW + +KR++A++V C VCQ K EHQKPAG++ PL + EWK
Sbjct: 1052 YSIHPGSTKMYQDLKKRFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWK 1111
Query: 429 WDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
W+ I MDF+T LP T G D+IWVIVDRLTK AHF+P+ ++ ++LAE+Y+ IV LHG
Sbjct: 1112 WEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVCLHG 1171
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
VP IVSDR +FTS FWK LQE +GSKL S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1172 VPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRACALD 1231
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
GG+WD +LP EF+YNNSY +S+ MA +EALYGR+CRTPL W ++ ER V G +I+++
Sbjct: 1232 FGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDILREA 1291
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
EKV++I+E+++ +QSR KSY D RR+DL F+EGD+++LRVTP+ GV R KL P+F
Sbjct: 1292 EEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFQTKGKLAPRF 1351
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GPY I+ R G VAY++ LP L+ +H+VFHVSQL+K + P+ + ++V+++LT
Sbjct: 1352 VGPYKIVSRRGEVAYQLELPQSLAGVHDVFHVSQLKKCLRVPTEEANIEQIEVQEDLTYV 1411
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P+RI + + R + I +V WS + E TWE E ++ ++P LF
Sbjct: 1412 EKPIRILETSERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1461
>emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar-group)]
gi|50927889|ref|XP_473472.1| OSJNBa0065O17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 513 bits (1322), Expect = e-144
Identities = 253/525 (48%), Positives = 353/525 (67%), Gaps = 2/525 (0%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIK 310
KANVVADALSRK A + + + L R++ + QS L + I+
Sbjct: 1325 KANVVADALSRKVYCNVAQIWPDQDRL--CRELEKLRLTVVQSGVPASLTVQPTLESQIR 1382
Query: 311 EAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLS 370
EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E+H S+ S
Sbjct: 1383 EAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYS 1442
Query: 371 IHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWD 430
IHPG+TKMY D+K FW +G+KRDVA++V C VCQ K EHQKPAG++ PL + EWKW+
Sbjct: 1443 IHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDVCQRVKAEHQKPAGLLQPLPIPEWKWE 1502
Query: 431 SISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVP 490
I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ +F +LAE+Y+ +V G P
Sbjct: 1503 EIGMDFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTTFDGKKLAELYMTRVVCRFGCP 1562
Query: 491 SSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG 550
IVSDR +FTSRFW L EALG+ L S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1563 KKIVSDRGTQFTSRFWNQLHEALGTDLNFSTAYHPQTDGQTERVNQVLEDMLRACALDFE 1622
Query: 551 GTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTE 610
GTWD LP EF+YNNSY +SI M+ EA++GR+CRTPLCW E+ E +V GP+I++ E
Sbjct: 1623 GTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWNEAGEALVFGPDILKTAEE 1682
Query: 611 KVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIG 670
+V++IRE++K +Q+ QK+Y D RR+DLEF++GDH++LRV+P+ G+ R S KL P++IG
Sbjct: 1683 QVKLIRERLKTAQNGQKNYADNRRRDLEFEKGDHVYLRVSPLRGMKRFGMSGKLAPRYIG 1742
Query: 671 PYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETL 730
PY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++ NLT +
Sbjct: 1743 PYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKKR 1802
Query: 731 PLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 1803 PIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEQEDLLRAEFP 1847
>gb|AAP52185.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531192|ref|NP_919898.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20177640|gb|AAM14695.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1680
Score = 513 bits (1321), Expect = e-144
Identities = 256/533 (48%), Positives = 362/533 (67%), Gaps = 12/533 (2%)
Query: 251 KANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGM---LKIDSEF 305
KANVVADALSRK + +A R+ EL ++F ++L V +G L+
Sbjct: 1143 KANVVADALSRKG-YCNATEGRQLPLELCKEFERLNLGI------VSIGFVAALEAKPTL 1195
Query: 306 LKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESH 365
+ ++EAQ +D ++ + + I F D+ G + RIC+PDN+++K IL+E+H
Sbjct: 1196 IDQVREAQTNDPDIQEIKKNMRRGKAIGFLEDEHGTVWLGERICVPDNKDLKDAILKEAH 1255
Query: 366 RSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVL 425
+ SIHPG+TKMY DLK+ FW + +KR++A++V C VCQ K EHQKPAG++ PL +
Sbjct: 1256 DTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLKIP 1315
Query: 426 EWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVK 485
EWKW+ I MDF+T LP T G D+IWVIVDRLTK AHF+P+ ++ ++LAE+Y+ IV
Sbjct: 1316 EWKWEEIGMDFITGLPKTSLGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARIVC 1375
Query: 486 LHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRIC 545
LHGVP IVSDR +FTS FWK LQE +GSKL S+AYHPQTDGQ+ER Q LED+LR C
Sbjct: 1376 LHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLRAC 1435
Query: 546 VLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIV 605
L+ GG+WD +LP EF+YNNSY +S+ MA +EALYGR+CRTPL W ++ ER V G +I+
Sbjct: 1436 ALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTDIL 1495
Query: 606 QQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLT 665
++ EKV++I+E+++ +QSR KSY D RR+DL F+EGD+++LRVTP+ GV R KL
Sbjct: 1496 REAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPLRGVHRFHTKGKLV 1555
Query: 666 PKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNL 725
P+F+GPY I+ R G VAY++ LP L+ +HNVFHVSQL+K + P+ + ++V+++L
Sbjct: 1556 PRFVGPYKIVSRRGEVAYQLELPQSLAEVHNVFHVSQLKKCLRVPTEEANLEQIEVQEDL 1615
Query: 726 TVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
T P+RI + + R + I +V WS + E TWE E ++ ++P LF
Sbjct: 1616 TYVEKPIRILETNERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPYLF 1668
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 513 bits (1321), Expect = e-144
Identities = 253/525 (48%), Positives = 353/525 (67%), Gaps = 2/525 (0%)
Query: 251 KANVVADALSRKTLHMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSIK 310
KANVVADALSRK A + + + L R++ + QS L + I+
Sbjct: 1235 KANVVADALSRKAYCNVAQIRPDQDRL--CRELEKLRLTVVQSGVPASLTVQPTLESQIR 1292
Query: 311 EAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSLS 370
EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E+H S+ S
Sbjct: 1293 EAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKEAHESAYS 1352
Query: 371 IHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKWD 430
IHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL + EWKW+
Sbjct: 1353 IHPGSTKMYQDIKAYFWWTGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKWE 1412
Query: 431 SISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGVP 490
I M F+T LP TP G D+IWVIVDRLTKSAHF+P+ F +LAE+Y+ +V G P
Sbjct: 1413 EIGMYFITGLPRTPSGYDSIWVIVDRLTKSAHFVPVKTIFDGKKLAELYMTHVVCRFGCP 1472
Query: 491 SSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQG 550
IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR C L+
Sbjct: 1473 KKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLRACALDFE 1532
Query: 551 GTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTTE 610
GTWD LP EF+YNNSY +SI M+ EA++GR+CRTPLCW E E +V GP+I++ E
Sbjct: 1533 GTWDRCLPYAEFSYNNSYQASIQMSPNEAMFGRKCRTPLCWNEVGEALVFGPDILKAAEE 1592
Query: 611 KVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFIG 670
+V++IRE++K +Q+RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S KL P++IG
Sbjct: 1593 QVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIG 1652
Query: 671 PYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVETL 730
PY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++ NLT +
Sbjct: 1653 PYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKER 1712
Query: 731 PLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
P+++ + V+ R K I +V WS + + TWE E + +P
Sbjct: 1713 PIKVLEEAVRQTRRKTIKFYKVQWSNHSEDEATWEREDLLRAEFP 1757
>gb|AAV32172.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1820
Score = 513 bits (1321), Expect = e-144
Identities = 263/530 (49%), Positives = 350/530 (65%), Gaps = 6/530 (1%)
Query: 251 KANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKS 308
KANVVADALSRK H + + VR EL +Q ++L L L+ L
Sbjct: 1283 KANVVADALSRKG-HCNTLNVRGIPPELNQQMEALNLSIV---SRGFLAALEAKPTLLDQ 1338
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
I+EAQ++D LL Q + F D+ G L R+C+P N E+K++IL+E+H S
Sbjct: 1339 IREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPHNRELKQLILQEAHESP 1398
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHPG+TKMY DLK+ +W +KR++A+FV C VCQ K EHQ+PAG++ PL V EWK
Sbjct: 1399 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWK 1458
Query: 429 WDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
WD I MDF+T LP T G D+IWV+VDRLTK A F+P+ ++ +LAE+Y IV LHG
Sbjct: 1459 WDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHG 1518
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
VP IVSDR +FTS FWK LQE LG++L S+AYHPQTDGQ+ER Q LED+LR CVL+
Sbjct: 1519 VPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLD 1578
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
G TWD LP EF+YNNSY +SI MA +EALYGR+CRTPL W + E V G +I+++
Sbjct: 1579 FGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREA 1638
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
KV++IR+ +K +QSRQKSY D RR+DLEF GD ++LRVTP+ GV R KL P++
Sbjct: 1639 EAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRY 1698
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GP+HI+ R G VAY++ LP L N+H+VFHVSQL+K + PS S+ ++VR++LT
Sbjct: 1699 VGPFHIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYV 1758
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P++I D + R + I +V WS E TWE E ++ ++P LF
Sbjct: 1759 ERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1808
>emb|CAD39363.2| OSJNBa0059H15.14 [Oryza sativa (japonica cultivar-group)]
gi|50921675|ref|XP_471198.1| OSJNBa0059H15.14 [Oryza
sativa (japonica cultivar-group)]
gi|32490114|emb|CAE04950.1| OSJNBa0070D17.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1030
Score = 513 bits (1320), Expect = e-143
Identities = 264/529 (49%), Positives = 350/529 (65%), Gaps = 6/529 (1%)
Query: 252 ANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSI 309
ANVVADALSRK+ H + + VR EL +Q ++L L L+ L I
Sbjct: 494 ANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNLSIVGRGF---LAALEAKPTLLDQI 549
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+EAQR+D LL Q + F D+ G L R+C+PDN E+K++IL+E+H S
Sbjct: 550 REAQRNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDNGELKQLILQEAHESPY 609
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+TKMY DLK+ +W +KR++A+FV C VCQ K EHQ+PAG++ PL V EWKW
Sbjct: 610 SIHPGSTKMYLDLKERYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKW 669
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
D I MDF+T LP T G D+IWV+VDRLTK A F+P+ ++ +LAE+Y IV LHGV
Sbjct: 670 DEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGV 729
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P IVSDR +FTS FWK LQE LG++L S+AYHPQTDGQ+ER Q LED+LR CVL+
Sbjct: 730 PKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDF 789
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
G TWD LP EF+YNNSY +SI MA +EALYGR+CRTPL W + E V G +I+++
Sbjct: 790 GKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAE 849
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
KV++IR+ +K +QSRQKSY D RR+DLEF GD ++LRVTP+ GV R KL P+++
Sbjct: 850 AKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQAKGKLAPRYV 909
Query: 670 GPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVET 729
GP+ IL R G VAY++ LP L N+H+VFHVSQL+K + PS S+ ++VR++LT
Sbjct: 910 GPFRILARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYVE 969
Query: 730 LPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P++I D + R + I +V WS E TWE E ++ ++P LF
Sbjct: 970 RPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1018
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1447
Score = 513 bits (1320), Expect = e-143
Identities = 249/529 (47%), Positives = 364/529 (68%), Gaps = 4/529 (0%)
Query: 251 KANVVADALSRKTL-HMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKSI 309
KANVVADALSRK+ +MS +EL ++F ++L + + L+ +
Sbjct: 910 KANVVADALSRKSYCNMSEGRRLPWELCQEFEKLNL---GIVSNGFVAALEAKPTLFDQV 966
Query: 310 KEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSSL 369
+EAQ +D +++ + + I + D+QG + RIC+P+N+E+K I++E+H +
Sbjct: 967 REAQVNDPDILEIKKNMRRGKAIGYVEDEQGTVWLGERICVPENKELKDTIMKEAHETLY 1026
Query: 370 SIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWKW 429
SIHPG+TKMY DLK+ FW + ++R++A++V C VCQ K EHQKPAG++ PL + EWKW
Sbjct: 1027 SIHPGSTKMYQDLKQQFWWASMRREIAEYVALCDVCQRVKAEHQKPAGLLQPLKIPEWKW 1086
Query: 430 DSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHGV 489
+ I MDF+T LP T G D+IWV+VDRLTK AHF+P+ ++ +LAE+Y+ +V LHGV
Sbjct: 1087 EEIGMDFITGLPRTLAGHDSIWVVVDRLTKVAHFIPVKTTYTGNKLAELYMARVVCLHGV 1146
Query: 490 PSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLEQ 549
P IVSDR +FTS+FW+ LQ +G++L S+AYHPQTDGQ+ER Q LED+LR CVL
Sbjct: 1147 PKKIVSDRGSQFTSKFWQKLQVEMGTRLNFSTAYHPQTDGQTERVNQILEDMLRACVLAF 1206
Query: 550 GGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQTT 609
GG+WD +LP EF+YNNSY +S+ MAS+EALYGR+CRTPL W ++ ER V G +I++Q
Sbjct: 1207 GGSWDKNLPYAEFSYNNSYQASLQMASYEALYGRKCRTPLLWDQTGERQVFGTDILRQAE 1266
Query: 610 EKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKFI 669
EKV++I+E+++ +QSRQKSY D RR+DL F+EGD+++LRVTP+ GV R KL P+F+
Sbjct: 1267 EKVKIIQERLRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLQGVHRFQTKGKLAPRFV 1326
Query: 670 GPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVET 729
GPY I+ R G VAY++ LPP ++ +H+VFHVSQL+K + P+ D ++++++LT
Sbjct: 1327 GPYKIVSRRGEVAYQLELPPSMAGIHDVFHVSQLKKCLRVPTEEADPDCIELQEDLTYVE 1386
Query: 730 LPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P+RI + + R + I +V WS + E TWE E ++ ++P LF
Sbjct: 1387 KPVRILEVSERNTRNRVIRFCKVQWSNHSEEEATWEREDELKSAHPHLF 1435
>emb|CAE03019.3| OSJNBa0091D06.9 [Oryza sativa (japonica cultivar-group)]
gi|50926829|ref|XP_473331.1| OSJNBa0091D06.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1762
Score = 512 bits (1319), Expect = e-143
Identities = 254/532 (47%), Positives = 354/532 (65%), Gaps = 16/532 (3%)
Query: 251 KANVVADALSRKTLHMSAM-------MVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDS 303
KANVVADALSRK A + RE E L +++V P S L +
Sbjct: 1236 KANVVADALSRKAYCNVAQIRPDQDHLCRELEKLR----LTVVQSGVPAS-----LTVQP 1286
Query: 304 EFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEE 363
I+EAQ+DD +L+ + +D +F IDDQG + RIC+P +E++ +IL+E
Sbjct: 1287 TLESQIREAQKDDEGIKELIKRIQEKKDTNFSIDDQGTVWCGPRICVPAKKELRDLILKE 1346
Query: 364 SHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLD 423
+H S+ SIHPG+TKMY D+K FW +G+KRDVA++V C +CQ K EHQ+PAG++ PL
Sbjct: 1347 AHESAYSIHPGSTKMYQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLP 1406
Query: 424 VLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
+ EWKW+ I MDF+T LP TP G D+IWVIVDRLTKSAHF+P+ ++ +LAE+Y+ +
Sbjct: 1407 IPEWKWEEIGMDFITGLPRTPNGYDSIWVIVDRLTKSAHFVPVKTTYDGKKLAELYMTHV 1466
Query: 484 VKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLR 543
V G P IVSDR +FTSRFWK L EALG+ L S+AYHPQTDGQ+ER Q LED+LR
Sbjct: 1467 VCRFGCPKKIVSDRGTQFTSRFWKQLHEALGTDLNFSTAYHPQTDGQTERVNQILEDMLR 1526
Query: 544 ICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPE 603
C L+ GTWD LP EF+YNNSY +SI M+ A++GR+CRTPLCW E E +V GP+
Sbjct: 1527 ACALDFEGTWDRCLPYAEFSYNNSYQASIQMSPNGAMFGRKCRTPLCWNEVGEALVFGPD 1586
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKK 663
I++ E+V++IRE++K +Q+RQK+Y D RR+DLEF++GDH++LRV+P+ G+ R S K
Sbjct: 1587 ILKSAEEQVKLIRERLKTAQNRQKNYADNRRRDLEFEKGDHVYLRVSPLRGMRRFGMSGK 1646
Query: 664 LTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRD 723
L P++IGPY I R G VAY++ LP L+++HNVFHVSQL+K + P + ++++
Sbjct: 1647 LAPRYIGPYLITARRGEVAYQLELPEGLADVHNVFHVSQLKKCLRVPEEQVPLGNIELEK 1706
Query: 724 NLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP 775
NLT + P+++ + + R K I +V WS + + TWE E + +P
Sbjct: 1707 NLTYKERPIKVLEEAERQTRRKTIKFYKVQWSNHSEDEATWEQEDLLRAEFP 1758
>gb|AAP52927.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532676|ref|NP_920640.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|22725935|gb|AAN04945.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1825
Score = 511 bits (1317), Expect = e-143
Identities = 262/530 (49%), Positives = 350/530 (65%), Gaps = 6/530 (1%)
Query: 251 KANVVADALSRKTLHMSAMMVREF--ELLEQFRDMSLVCEWTPQSVKLGMLKIDSEFLKS 308
KANVVADALSRK+ H + + VR EL +Q ++L L L+ L
Sbjct: 1288 KANVVADALSRKS-HCNTLNVRGIPPELNQQMEALNLSIV---SRGFLAALEAKPTLLDQ 1343
Query: 309 IKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEESHRSS 368
I+EAQ++D LL Q + F ++ G L R+C+PDN E+K++IL+E+H S
Sbjct: 1344 IREAQKNDPDMHGLLKNMKQGKAAGFTEEEHGTLWNGNRVCVPDNRELKQLILQEAHESP 1403
Query: 369 LSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLDVLEWK 428
SIHPG+TKMY DLK+ +W +KR++A+FV C VCQ K EHQ+PAG++ PL V EWK
Sbjct: 1404 YSIHPGSTKMYLDLKEKYWWVSMKREIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWK 1463
Query: 429 WDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEIVKLHG 488
WD I MDF+T LP T G D+IWV+VDRLTK A F+P+ ++ +LAE+Y IV LHG
Sbjct: 1464 WDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHG 1523
Query: 489 VPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLRICVLE 548
VP IVSDR +FTS FWK LQE LG++L S+AYHPQTDGQ+ER Q LED+LR CVL+
Sbjct: 1524 VPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLD 1583
Query: 549 QGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPEIVQQT 608
G TWD LP EF+YNNSY +SI MA +EALYGR+CRTPL W + E V G +I+++
Sbjct: 1584 FGKTWDKSLPYAEFSYNNSYQASIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREA 1643
Query: 609 TEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKKLTPKF 668
KV++IRE +K +QSRQKSY D RR+DLEF D ++LRVTP+ GV R KL P++
Sbjct: 1644 EAKVRIIRENLKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKGKLAPRY 1703
Query: 669 IGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRDNLTVE 728
+GP+ I+ R G VAY++ LP L N+H+VFHVSQL+K + PS S+ ++VR++LT
Sbjct: 1704 VGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYV 1763
Query: 729 TLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
P++I D + R + I +V WS E TWE E ++ ++P LF
Sbjct: 1764 ERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEATWEREDELKAAHPDLF 1813
>gb|AAP51922.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530666|ref|NP_919635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20042905|gb|AAM08733.1| Putative polyprotein [Oryza
sativa] gi|18997227|gb|AAL83344.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1443
Score = 511 bits (1317), Expect = e-143
Identities = 255/535 (47%), Positives = 360/535 (66%), Gaps = 16/535 (2%)
Query: 251 KANVVADALSRKTL-------HMSAMMVREFELLEQFRDMSLVCEWTPQSVKLGMLKIDS 303
KANVVADALSRK + + +EFE+L ++ +V +++ ID
Sbjct: 906 KANVVADALSRKGYCNATEGRQLPLELCKEFEIL----NLGIVSRGFVAALEAKPTLIDQ 961
Query: 304 EFLKSIKEAQRDDVKFVDLLVARDQTEDIDFKIDDQGVLRFRGRICIPDNEEIKKMILEE 363
++EAQ +D ++ + + I F D+QG + RIC+PDN+++K IL+E
Sbjct: 962 -----VREAQINDPDIQEIKKNMRRGKAIGFLEDEQGTVWLGERICVPDNKDLKDAILKE 1016
Query: 364 SHRSSLSIHPGATKMYHDLKKIFWGSGLKRDVAQFVYSCLVCQESKVEHQKPAGMMVPLD 423
+H + SIHPG+TKMY DLK+ FW + +KR++A++V C VCQ K EHQKPAG++ PL
Sbjct: 1017 AHDTLYSIHPGSTKMYQDLKERFWWASMKREIAEYVAVCDVCQRVKAEHQKPAGLLQPLK 1076
Query: 424 VLEWKWDSISMDFVTSLPNTPRGSDAIWVIVDRLTKSAHFLPINISFPVAQLAEIYIKEI 483
+ EWKW+ I MDF+T LP T G D+IWVIVDRLTK AHF+P+ ++ ++LAE+Y+ I
Sbjct: 1077 IPEWKWEEIGMDFITGLPRTSSGHDSIWVIVDRLTKVAHFIPVKTTYSGSRLAELYMARI 1136
Query: 484 VKLHGVPSSIVSDRDPRFTSRFWKSLQEALGSKLRLSSAYHPQTDGQSERTIQSLEDLLR 543
V LHGVP IVSDR +FTS FWK LQE +GSKL S+AYHPQTDGQ+ER Q LED+LR
Sbjct: 1137 VCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGSKLNFSTAYHPQTDGQTERVNQILEDMLR 1196
Query: 544 ICVLEQGGTWDSHLPLIEFTYNNSYHSSIGMASFEALYGRRCRTPLCWFESDERVVLGPE 603
C L+ GG+WD +LP EF+YNNSY +S+ MA +EALYGR+CRTPL W ++ ER V G +
Sbjct: 1197 ACALDFGGSWDKNLPYAEFSYNNSYQASLQMAPYEALYGRKCRTPLLWDQTGERQVFGTD 1256
Query: 604 IVQQTTEKVQMIREKMKASQSRQKSYHDKRRKDLEFKEGDHMFLRVTPMTGVGRALKSKK 663
I+++ EKV++I+E+++ +QSR KSY D RR+DL F+EGD+++LRVTP GV R K
Sbjct: 1257 ILREAEEKVKIIQERLRVAQSRHKSYADNRRRDLSFEEGDYVYLRVTPFRGVHRFHTKGK 1316
Query: 664 LTPKFIGPYHILERVGTVAYRVGLPPHLSNLHNVFHVSQLRKYVPDPSHVIQSDDVQVRD 723
L P+F+GPY I+ R G VAY++ LP L+ +HNVFHVSQL+K + P+ + ++V++
Sbjct: 1317 LAPRFVGPYKIVSRRGEVAYQLELPQSLAGVHNVFHVSQLKKCLRVPTEEANLEQIEVQE 1376
Query: 724 NLTVETLPLRIDDRKVKTLRGKEIPLVRVVWSGATGESLTWELESKMLESYP*LF 778
+LT P+RI + + R + I +V WS + E TWE E ++ ++P LF
Sbjct: 1377 DLTYVEKPIRILEINERRTRNRVIRFCKVQWSNHSEEESTWEREDELKSAHPHLF 1431
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.336 0.146 0.476
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,216,255,200
Number of Sequences: 2540612
Number of extensions: 47818934
Number of successful extensions: 172060
Number of sequences better than 10.0: 1801
Number of HSP's better than 10.0 without gapping: 1580
Number of HSP's successfully gapped in prelim test: 221
Number of HSP's that attempted gapping in prelim test: 167711
Number of HSP's gapped (non-prelim): 2412
length of query: 779
length of database: 863,360,394
effective HSP length: 136
effective length of query: 643
effective length of database: 517,837,162
effective search space: 332969295166
effective search space used: 332969295166
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 79 (35.0 bits)
Medicago: description of AC141111.8