BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.5 - phase: 0 /pseudo
(1478 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD22153.1| polyprotein [Sorghum bicolor] 425 e-117
ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cu... 417 e-114
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 417 e-114
emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar... 417 e-114
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 417 e-114
ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultiv... 416 e-114
ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultiva... 416 e-114
gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cult... 415 e-114
gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cul... 415 e-114
gb|AAV43966.1| putative polyprotein [Oryza sativa (japonica cult... 415 e-114
gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cul... 415 e-114
gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica] 414 e-114
gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-... 414 e-114
gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cult... 414 e-113
ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cu... 413 e-113
ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cu... 413 e-113
emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa (japonica cultiva... 413 e-113
emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar... 413 e-113
gb|AAP52970.1| putative retroelement [Oryza sativa (japonica cul... 412 e-113
ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultiv... 412 e-113
>gb|AAD22153.1| polyprotein [Sorghum bicolor]
Length = 1484
Score = 425 bits (1092), Expect = e-117
Identities = 250/675 (37%), Positives = 366/675 (54%), Gaps = 54/675 (8%)
Query: 23 FLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVSLLP 82
F++ PP F DP A WL+ VER + QC++++KV + + QL A WW S
Sbjct: 74 FMKGRPPVFTHSADPMEADDWLRAVERQLNIAQCNDLEKVLYASGQLQGAAQTWWESYQA 133
Query: 83 NLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAEFYP 142
+ VTW F R+F R+ E V K+ EF L+ G+M V EY F +LA + P
Sbjct: 134 ARPNNASPVTWLEFCRDFRARHINEGVMELKQEEFRSLRMGSMTVAEYHDTFEQLARYAP 193
Query: 143 HYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYK------ 196
+ E + + F GL +++ + F LVN + + K+ K
Sbjct: 194 NDVREDADKQRL--FMKGLYYELRLQLAGNTYPTFQALVNRAIVLDNMRKSQDKKRRMLA 251
Query: 197 ----VVNERKTKGQQSRPKPYSAPA-----DKGKQRMVDDRRPKKKDAPAEITCFNCGEK 247
N ++ Q + + P ++ QR + + + P + N +
Sbjct: 252 QGSGSNNRQRFSSHQGHQQRFQGPVSQWNRNQQPQRFQNQSQSGNQRPPFQQRNHNQQQH 311
Query: 248 GHKS----NVCPEEIK--------KCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCK 295
G ++ N K +C RCGK+GH+ DC FN Q
Sbjct: 312 GQQAPRPGNPNANSTKRSASNTPTRCFRCGKEGHMSYDCPEK----FN--------PQYN 359
Query: 296 QPKKSPTTGRVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGL 355
+ +P + +V + + ++ T IN+ P + D+GA+H FI+ V L
Sbjct: 360 DRRSTPNSAKVNNVAAETVQEGPEIMMGTFSINSIPATVLFDSGASHTFISQAFVRVHSL 419
Query: 356 DLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEY 415
L MN M+V +P G + SL C LS+ G DF + + + SG+DVILG++W++
Sbjct: 420 PLVAMNTPMLVNSPG-GTIPVSLRCPSASLSLRGVDFPISPMVMRTSGIDVILGLDWMKQ 478
Query: 416 NHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQ 475
+ +IN + V L+T + +++ D + PL A ++ V +
Sbjct: 479 HATNINCKERVV------------VLTTPKGERISVDVTMQAPLAAKVNQLTDDVDPQNL 526
Query: 476 VVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEK 535
VV +FP+VFPDE+P +P +R++EF I+L+ GT P++ PYRM EL +LKKQ+++L +K
Sbjct: 527 VVDEFPDVFPDELPGMPPDRDIEFIIELLPGTAPIAKRPYRMGVKELEELKKQIKELQDK 586
Query: 536 KFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVF 595
F+RPS SPWGAPV+ V KKDGS R+C+DYR LN+VTIKN+YPLPRIDDL DQL GA VF
Sbjct: 587 GFIRPSSSPWGAPVIFVDKKDGSQRMCVDYRSLNEVTIKNKYPLPRIDDLFDQLRGACVF 646
Query: 596 SKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLD 655
SKIDLRSGYHQ+K+++ D+ KTAF+TRYG YEY VM FG+TNAP FM MN++F +LD
Sbjct: 647 SKIDLRSGYHQLKIRNSDIPKTAFTTRYGLYEYTVMSFGLTNAPAYFMYMMNKVFMEYLD 706
Query: 656 RFVVVFIDDILIYSK 670
+FVVVFIDDIL++SK
Sbjct: 707 KFVVVFIDDILVFSK 721
>ref|NP_914274.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1572
Score = 417 bits (1073), Expect = e-114
Identities = 252/708 (35%), Positives = 368/708 (51%), Gaps = 64/708 (9%)
Query: 8 QQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQK 61
Q A GNG M L FLR+ PP F +P A WLK+V+R ++QC+ V+K
Sbjct: 121 QHNAHGNGHPHMGNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEK 180
Query: 62 VRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELK 121
+ + +HQL A DWW + N + ++ W F F + PE K+ EF LK
Sbjct: 181 MLYASHQLRGPAADWWENYC-NAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLK 239
Query: 122 QGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLV 181
QGN + EY ++F +LA + P + K KF G+ ++ + F ++
Sbjct: 240 QGNSSINEYLSQFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMI 297
Query: 182 NSCRIYEEDTKAHYKVVNERKTKGQ----QSRPKP-YSAPADKGKQRMVDDRRP------ 230
N + E+ K + +RK+ Q + P+P Y P + +R+P
Sbjct: 298 NKALLLEDARKEATEEYKKRKSNHQGNSFRGAPRPRYGQPMQYHQSVTQANRQPGYAPRP 357
Query: 231 --------------------------KKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRC 264
K P+ + CF C + GH + CP+
Sbjct: 358 QINRPAPQPQQRAPSGNTAPNSVISFKSPQGPSAVQCFRCNQMGHYARQCPQNPTNT--- 414
Query: 265 GKKGHIVADCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRC 323
GH R Q + + GRV + ++ ++
Sbjct: 415 -NSGHANGSTARTPTPAAAQSRPSSQASGQGSRASNNFGRGRVNHIQAETAQDAPDVVMG 473
Query: 324 TCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRC 383
+N+ P + + D+GA+H FI+ V G ++ M+V +P + + T +C
Sbjct: 474 MFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQ-ICPEV 532
Query: 384 LLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLST 443
L + DF + L +D+ILGM+WL + I+ KS+ +++ G + T
Sbjct: 533 NLRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSI---TLQGPGGKQVRFT 589
Query: 444 KQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDL 503
R IL + SL + + +VC++P+VFP+E+ +P +RE+EF+I+L
Sbjct: 590 PNTPTASRS-ILTCLQVTSL--------ESVPIVCEYPDVFPEELKRMPPDREIEFAIEL 640
Query: 504 ILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCI 563
GT P++ PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKDGS R+ I
Sbjct: 641 APGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVI 700
Query: 564 DYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRY 623
DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ KTAFSTRY
Sbjct: 701 DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRY 760
Query: 624 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
G YE+ VM FG+TNAP FM MN+IF +LD+FVVVFID+ILIYSK+
Sbjct: 761 GLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDNILIYSKN 808
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 417 bits (1073), Expect = e-114
Identities = 268/707 (37%), Positives = 372/707 (51%), Gaps = 73/707 (10%)
Query: 1 AVAQAVGQQPAAGNGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQ 60
A+A G + + GE F+R PP F +P A+ WL+ +E+ +++ E
Sbjct: 35 AIASNQGNRGGSSFGE------FMRTKPPTFATADEPMEAEDWLRIIEKKLTLVRVREAD 88
Query: 61 KVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLEL 120
KV F +QL A DWW + + + TW F F + P V R K+ EF L
Sbjct: 89 KVIFAVNQLEGPAGDWWDTYKEAREDGAGEPTWEEFTVAFRENFVPAAVMRMKKNEFRRL 148
Query: 121 KQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDL 180
+QGN V EY KF +LA + A+ E K KF GL +++ + Q F L
Sbjct: 149 RQGNTTVQEYLNKFTQLARYAIGDLADEEE--KIDKFIEGLNDELRGPMIGQDHESFQSL 206
Query: 181 VNSCRIYEEDTKAHYKVVNERKTKGQQSR-------------PKPYSAP----------A 217
+N E D + V + RK + SR P + P +
Sbjct: 207 INKVVRLENDQRT---VEHNRKRRLAMSRLPQTVPQRLKGATPSGWKPPVMVTNRPAALS 263
Query: 218 DKGKQRMVDDRRPKKK----DAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVAD 273
+ + + +R P A + CFNCGE GH +N CP K +R G V
Sbjct: 264 NFNRPVALQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPIRTGANAMTVRG 323
Query: 274 CKRNDIVCFNFNEEGHIGSQCKQPKKSPTT-----GRVFALDGTQTENEDRLIRCTCYIN 328
+ F K P+ + TT G+V + + + + ++ IN
Sbjct: 324 TTTPAVGRGLF----------KTPQSNRTTTGFGRGQVNHVRAEEAQEDQGVLMGMFSIN 373
Query: 329 NTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMF 388
+TP+ + D+GA+H FI+ L L + M+V +P G +T S C+ + +
Sbjct: 374 STPVKVLFDSGASHSFISLKASQKHNLTLVGLRKPMIVHSPG-GEITVSHACIDVPIRLR 432
Query: 389 GRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLST--KQL 446
F +L+ L +DVILGM+WL + I+ + V ++ G++ +T +
Sbjct: 433 DVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTT---PWGSDMRATMDQDP 489
Query: 447 KQMERDG--ILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLI 504
+ ER G M PL + VV FP+VFP+++P +P +R+VEF IDLI
Sbjct: 490 RLTERAGGIFTMLPLKG------------MPVVQRFPDVFPEDLPGMPPDRDVEFIIDLI 537
Query: 505 LGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCID 564
GT P+S PYRM +EL +LKKQ+ +L +K FVRPS SPWGAPVL KKKDGSMR+C+D
Sbjct: 538 PGTAPISKRPYRMPVNELEELKKQIRELQQKGFVRPSSSPWGAPVLFDKKKDGSMRMCVD 597
Query: 565 YRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYG 624
YR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSGYHQ+K++ ED+ KTAFSTRYG
Sbjct: 598 YRSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTEDIPKTAFSTRYG 657
Query: 625 HYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
YE+ VM FG+TNAP FM MN++F +LD+FVVVFIDDILIYSKD
Sbjct: 658 LYEFTVMSFGLTNAPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKD 704
>emb|CAD40516.1| OSJNBa0023J03.1 [Oryza sativa (japonica cultivar-group)]
gi|50922727|ref|XP_471724.1| OSJNBa0023J03.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1827
Score = 417 bits (1072), Expect = e-114
Identities = 249/660 (37%), Positives = 359/660 (53%), Gaps = 15/660 (2%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 398 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 457
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGNM VTEY +F LA
Sbjct: 458 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNMTVTEYLHEFNRLAR 516
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHY---- 195
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 517 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKMDRKR 573
Query: 196 KVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN--V 253
K R +G Q RP+ +V RP + T + +G + N
Sbjct: 574 KAAQFRSNQGSQHRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGA 633
Query: 254 CPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFALD 310
P + + + CFN E GH +C +P+++ RV
Sbjct: 634 APRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS 693
Query: 311 GTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPA 370
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V TP
Sbjct: 694 AEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKDELSTPMRVRTPG 753
Query: 371 KGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS 430
+ S L+ + F +L+ L +DVILGM+WL I+ +++V +
Sbjct: 754 NSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLT 812
Query: 431 SVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPD 490
+ + E+ + S KQ + + +N ++ + +VC++PEVFP+++
Sbjct: 813 NEKGET-VVYKSPDSPKQGVSLNQIETEIPVDTVGKNLRKLEDIPIVCEYPEVFPEDLTT 871
Query: 491 VPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVL 550
+P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS SPWGAPV+
Sbjct: 872 MPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVI 931
Query: 551 LVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVK 610
V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSGYHQ++++
Sbjct: 932 FVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIR 991
Query: 611 DEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
+ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFIDDILIYSK
Sbjct: 992 EEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFIEFLDKFVVVFIDDILIYSK 1051
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 417 bits (1071), Expect = e-114
Identities = 262/700 (37%), Positives = 368/700 (52%), Gaps = 59/700 (8%)
Query: 1 AVAQAVGQQPAAGNGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQ 60
A+A G + + GE F+R PP F +P A+ WL+ +E+ +++ E
Sbjct: 35 AIANNQGNRGRSSFGE------FMRTKPPTFTTADEPMEAEDWLRIIEKKLTLVRVREAD 88
Query: 61 KVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLEL 120
KV F +QL A D W + ++D + TW F F + P V R K+ EF +
Sbjct: 89 KVIFAVNQLEGPAGDRWDTYKEAREEDAGEPTWEEFTAAFQENFVPAAVMRMKKNEFRRM 148
Query: 121 KQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDL 180
+QGN V EY +F +LA + A+ E K KF GL +++ + Q F L
Sbjct: 149 RQGNTTVQEYLNRFTQLARYAIGDLADEEE--KIDKFIEGLNDELRGPMIGQDHESFQSL 206
Query: 181 VNSCRIYEEDTKA-----HYKVVNERKTKGQQSR---------------PKPYSAPADKG 220
+N E D + ++ R +G R P +AP++
Sbjct: 207 INKVVRLENDQRTVEHNHKRRLAMNRPPQGVPQRLKGATSSGWKPPIVAPNRPAAPSNFN 266
Query: 221 KQRMVDDRRPKKK----DAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVADCKR 276
+ ++ +R P A + CFNCGE GH +N CP K VR G V
Sbjct: 267 RPVVIQNRTPTPTLAAPGAKKNVDCFNCGEYGHYANNCPHPRKTPVRTGANAMTVRGTTT 326
Query: 277 NDIVCFNFNEEGHIGSQCKQPKKSPT---TGRVFALDGTQTENEDRLIRCTCYINNTPLV 333
G + Q ++ T G+V + + + + ++ IN+TP+
Sbjct: 327 P--------AAGRGLFKTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMFSINSTPVK 378
Query: 334 AIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRDFE 393
+ D+GA+H FI+ L L + M+V +P G +T S C+ + + F
Sbjct: 379 VLFDSGASHSFISRKASQKHNLTLVGLRKPMIVHSPG-GEITVSHACIDVPIRLRDVVFP 437
Query: 394 MDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMERDG 453
+L+ L +DVILGM+WL N I+ + V ++ S + + +ER G
Sbjct: 438 SNLLVLIPQTLDVILGMDWLTKNRGVIDCRRRKVTLTT-PWRSDMRATMDQDPRLIERAG 496
Query: 454 --ILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVS 511
M PL + +V FP+VFP+++P +P +R++EF IDLI GT P+S
Sbjct: 497 GIFTMLPLKG------------MPIVQRFPDVFPEDLPGMPPDRDIEFIIDLIPGTAPIS 544
Query: 512 MAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKV 571
PYRM +EL +LKKQ+ +L EK FVRPS SPWGAPVL VKKKDGSMR+C+DYR LN+V
Sbjct: 545 KRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDYRSLNEV 604
Query: 572 TIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVM 631
TIKN+YPLPRIDDL DQL GAKVFSKIDLRSGYHQ+K++ D+ KTAFSTRYG YE+ VM
Sbjct: 605 TIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDVPKTAFSTRYGLYEFTVM 664
Query: 632 PFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
FG+TN P FM MN++F +LD+FVVVFIDDILIYSKD
Sbjct: 665 SFGLTNTPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKD 704
>ref|XP_474453.1| OSJNBa0039K24.13 [Oryza sativa (japonica cultivar-group)]
gi|38345510|emb|CAE01794.2| OSJNBa0039K24.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 416 bits (1070), Expect = e-114
Identities = 252/700 (36%), Positives = 367/700 (52%), Gaps = 59/700 (8%)
Query: 10 PAAGNGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQL 69
P GN ++ + FLR+ PP F +P A WLK+V+R ++QC+ V+K + +HQL
Sbjct: 409 PHVGNNRSKLTD-FLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQL 467
Query: 70 AEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTE 129
A DWW + N + ++ W F F + PE K+ EF LKQGN V E
Sbjct: 468 RGPAADWWENYC-NAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLKQGNSSVNE 526
Query: 130 YAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEE 189
Y ++F +LA + P + K KF G+ ++ + F ++N + E+
Sbjct: 527 YLSQFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLQLLAHDFPTFHHMINKALLLED 584
Query: 190 DTKAHYKVVNERKT--KGQQSR---------------------------PKPY-SAPADK 219
K + +RK+ +G SR P+P + PA +
Sbjct: 585 ARKEATEEYKKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANHQPGYAPRPQMNRPAPQ 644
Query: 220 GKQRMVDDRRP-------KKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVA 272
+QR K P+ + CF C + GH + CP+ GH
Sbjct: 645 PQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQNPTNT----NSGHANG 700
Query: 273 DCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRCTCYINNTP 331
R Q + GRV + ++ ++ +N+ P
Sbjct: 701 STARTPAPAAAQSRPSSQASGQGSRASNHFGRGRVNHIQAEIAQDAPDVVMGMFSVNSVP 760
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRD 391
+ + D+GA+H FI+ V G ++ M+V +P + + T +C L + D
Sbjct: 761 AIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQ-ICPEVNLRIEEVD 819
Query: 392 FEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMER 451
F + L +D+ILGM+WL + I+ KS+ +++ G + T R
Sbjct: 820 FLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSI---TLQGPGGKQVRFTPNTPTASR 876
Query: 452 DGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVS 511
IL + SL + + +VC++P+VFP+E+ +P +RE+EF+I+L GT P++
Sbjct: 877 S-ILTCLQVTSL--------ESVPIVCEYPDVFPEELTRMPPDREIEFAIELAPGTAPIA 927
Query: 512 MAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKV 571
PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKDGS R+ IDYR LN+V
Sbjct: 928 KRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEV 987
Query: 572 TIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVM 631
TIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ KTAFSTRYG YE+ VM
Sbjct: 988 TIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVM 1047
Query: 632 PFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 1048 SFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 1087
>ref|XP_474185.1| OSJNBa0011F23.1 [Oryza sativa (japonica cultivar-group)]
gi|32489382|emb|CAE04228.1| OSJNBa0011F23.1 [Oryza sativa
(japonica cultivar-group)]
Length = 1787
Score = 416 bits (1068), Expect = e-114
Identities = 256/715 (35%), Positives = 367/715 (50%), Gaps = 64/715 (8%)
Query: 1 AVAQAVGQQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVM 54
A A A Q A GNG M L FLR+ PP F +P A WLK+V+R ++
Sbjct: 393 AAAVAGFQHNAHGNGHPHMSNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLV 452
Query: 55 QCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKE 114
QC+ V+K + +HQL A DWW + N + ++ W F F + PE K+
Sbjct: 453 QCTPVEKTLYASHQLRGPAADWWENYC-NAHPEPTNIAWDEFATAFRAAHVPESTIDMKK 511
Query: 115 IEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQI 174
EF LKQGN V EY + F +LA + P + K KF G+ ++ +
Sbjct: 512 EEFNRLKQGNSSVNEYLSMFNKLARYAPEEVG--TDKKKIRKFLKGIAVGMRLQLLAHDF 569
Query: 175 RVFPDLVNSCRIYEEDTKAHYKVVNERKT--KGQQSRPKP---YSAPADKGKQRMVDDRR 229
F ++N + E+ K + +RK+ +G SR P Y P + +R+
Sbjct: 570 PTFQHMINKALLLEDARKEATEEYKKRKSNHQGNSSRGAPCPRYGQPMQYHQSVTQANRQ 629
Query: 230 P--------------------------------KKKDAPAEITCFNCGEKGHKSNVCPEE 257
P K P+ + CF C + GH + CP+
Sbjct: 630 PGYAPRPQMNRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQN 689
Query: 258 IKKCVRCGKKGHIVADCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTEN 316
GH R Q + + GRV + ++
Sbjct: 690 PTNT----SLGHANGSTARTPTPAAAQSRPSSQASGQGSRASNNFGRGRVNHIQAETAQD 745
Query: 317 EDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTT 376
++ +N+ P + + D+GA+H FI+ V G ++ M+V +P + + T
Sbjct: 746 APDVVMGMFSVNSIPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRAT 805
Query: 377 SLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEES 436
VC L + DF + L +D+ILGM+WL + I+ K++ +++
Sbjct: 806 Q-VCPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKTI---TLQGPG 861
Query: 437 GAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLERE 496
G + T R IL + SL + + +VC++P+VFP+++ +P +RE
Sbjct: 862 GKQVRFTSNTPTASR-SILTCLQVTSL--------ESVPIVCEYPDVFPEKLTSMPPDRE 912
Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
+EF+I+L T P++ PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKD
Sbjct: 913 IEFAIELAPSTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKD 972
Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
GS R+ IDYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ K++ ED+ K
Sbjct: 973 GSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQFKIRSEDIPK 1032
Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
TAFSTRYG YE+ VM FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 1033 TAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 1087
>gb|AAP52680.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532182|ref|NP_920393.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|23266283|gb|AAN16322.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1796
Score = 415 bits (1067), Expect = e-114
Identities = 253/673 (37%), Positives = 366/673 (53%), Gaps = 41/673 (6%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 367 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 426
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 427 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLQEFNRLAR 485
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVN 199
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 486 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKM---- 538
Query: 200 ERKTKGQQ------SRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN- 252
+RK K Q S +P P +G + R+ + P + F+ G G +++
Sbjct: 539 DRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHR----PFNSSNFHQGSSGSQNHH 594
Query: 253 -------VCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT-- 303
P + G + CFN E GH +C +P+++
Sbjct: 595 GGQPNRGAAPRPPMAPAQSGPSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFI 654
Query: 304 -GRVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNG 362
RV + + ++ T +N+ P + D+GATH FI+ V GL +++
Sbjct: 655 QARVNHASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELST 714
Query: 363 EMVVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINY 422
M V TP + S L+ + F +L+ L +DVILGM+WL I+
Sbjct: 715 PMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 773
Query: 423 FTKSVYFSSVEEESGA--EFLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVV 477
++V ++ + E+ +S KQ L Q+E + + +N ++ + +V
Sbjct: 774 ANRTVTLTNEKGETVVYKSLVSPKQGVSLNQIEAE------IPVDTVEKNLRKLEDIPIV 827
Query: 478 CDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKF 537
C++PEVFP+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K +
Sbjct: 828 CEYPEVFPEDLTIMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGY 887
Query: 538 VRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSK 597
+RPS SPWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSK
Sbjct: 888 IRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSK 947
Query: 598 IDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRF 657
IDLRSGYHQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+F
Sbjct: 948 IDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKF 1007
Query: 658 VVVFIDDILIYSK 670
VVVFIDDILIYSK
Sbjct: 1008 VVVFIDDILIYSK 1020
>gb|AAP52880.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532582|ref|NP_920593.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|15217199|gb|AAK92543.1| Putative retroelement [Oryza
sativa]
Length = 1773
Score = 415 bits (1066), Expect = e-114
Identities = 253/667 (37%), Positives = 365/667 (53%), Gaps = 29/667 (4%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 348 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 407
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 408 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 466
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVN 199
+ P E K KF GL ++ + F LV+ I +ED + K+
Sbjct: 467 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRN--KIDR 521
Query: 200 ERKTKG----QQSRPKPYSAPADKG--KQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN- 252
+RK Q S +P P +G +V RP + T + G + N
Sbjct: 522 KRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNR 581
Query: 253 -VCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFA 308
P + G+ + CFN E GH +C +P+++ RV
Sbjct: 582 GAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNH 641
Query: 309 LDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVET 368
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V T
Sbjct: 642 ASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHT 701
Query: 369 PAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVY 428
P + S L+ + F +L+ L +DVILGM+WL I+ ++V
Sbjct: 702 PGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVT 760
Query: 429 FSSVEEESGA--EFLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEV 483
++ + E+ +S K+ L Q+E + + +N ++ + +VC++PEV
Sbjct: 761 LTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNLRKLEDIPIVCEYPEV 814
Query: 484 FPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVS 543
FP+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS S
Sbjct: 815 FPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTS 874
Query: 544 PWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSG 603
PWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSG
Sbjct: 875 PWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSG 934
Query: 604 YHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFID 663
YHQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFID
Sbjct: 935 YHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFID 994
Query: 664 DILIYSK 670
DILIYSK
Sbjct: 995 DILIYSK 1001
>gb|AAV43966.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1684
Score = 415 bits (1066), Expect = e-114
Identities = 248/678 (36%), Positives = 355/678 (51%), Gaps = 51/678 (7%)
Query: 1 AVAQAVGQQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVM 54
A A A Q A GNG M L FLR+ PP F +P A WLK+V+R ++
Sbjct: 393 AAAIAGFQHNAHGNGHPHMGNNRSKLTDFLRSRPPKFSQTVEPVEADDWLKDVDRKLNLV 452
Query: 55 QCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKE 114
QC+ V+K + +HQL A DWW + N + ++ W F F + PE K+
Sbjct: 453 QCTPVEKTLYTSHQLRGPAADWWENYC-NAHPEPTNIAWDEFATAFRAAHVPESTIDMKK 511
Query: 115 IEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQI 174
EF LKQGN V EY ++F +LA + P + K KF G+ ++ +
Sbjct: 512 EEFNRLKQGNNSVNEYLSQFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLQLLAPDF 569
Query: 175 RVFPDLVNSCRIYEEDTKAHYKVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKD 234
F ++N + E+ A K E K + S P
Sbjct: 570 PTFQHMINKALLLED---ARKKATEEYKKRNVTSFKSPL--------------------- 605
Query: 235 APAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVADCKRNDI-VCFNFNEEGHIGSQ 293
P+ + CF C + GH + CP+ GH R Q
Sbjct: 606 GPSAVQCFRCNQMGHYARQCPQNPTNT----NSGHANGSTARTPTPAAAQSRPSSQASGQ 661
Query: 294 CKQPKKSPTTGRVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSAL 353
+ + GRV + ++ ++ +N+ P + + D+GA+H FI+ V
Sbjct: 662 GSRASNNFGRGRVNHIQAETAQDTPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFVKRN 721
Query: 354 GLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWL 413
G ++ M+V +P + + T +C L + DF + L +D+ILGM+WL
Sbjct: 722 GWKTQNLRVPMIVHSPWRNIRATQ-ICPEVNLRIEEVDFLAKPIVLDSQSLDIILGMDWL 780
Query: 414 EYNHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDK 473
+ I+ KS+ +++ G + T R + L+ ++
Sbjct: 781 AKHKGQIDCAEKSI---TLQGPGGKQVRFTSNTSTASR---------SILTCLQVTTLES 828
Query: 474 LQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLL 533
+ +VC +P+VFP+E+ +P +RE+EF+I+L GT P++ PYRM+A+ELA++K+Q+E+L
Sbjct: 829 VPIVCKYPDVFPEELTSMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIEELE 888
Query: 534 EKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAK 593
K +VRPS SPWGAPVLLVKKKDGS R+ IDYR LN+VTIKN+YPLPRIDDL DQL GA+
Sbjct: 889 SKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGAR 948
Query: 594 VFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAF 653
VFSKIDLRSGYHQ+K++ ED+ KTAFSTRYG YE+ VM F +TNAP FM MN+IF +
Sbjct: 949 VFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFELTNAPAFFMNLMNKIFMEY 1008
Query: 654 LDRFVVVFIDDILIYSKD 671
LD+FVVVFIDDILIYSK+
Sbjct: 1009 LDQFVVVFIDDILIYSKN 1026
>gb|AAM74400.1| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1300
Score = 415 bits (1066), Expect = e-114
Identities = 253/667 (37%), Positives = 365/667 (53%), Gaps = 29/667 (4%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 348 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 407
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 408 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 466
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVN 199
+ P E K KF GL ++ + F LV+ I +ED + K+
Sbjct: 467 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRN--KIDR 521
Query: 200 ERKTKG----QQSRPKPYSAPADKG--KQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN- 252
+RK Q S +P P +G +V RP + T + G + N
Sbjct: 522 KRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNR 581
Query: 253 -VCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFA 308
P + G+ + CFN E GH +C +P+++ RV
Sbjct: 582 GAAPRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNH 641
Query: 309 LDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVET 368
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V T
Sbjct: 642 ASAEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGRYGLRKEELSTPMRVHT 701
Query: 369 PAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVY 428
P + S L+ + F +L+ L +DVILGM+WL I+ ++V
Sbjct: 702 PGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVT 760
Query: 429 FSSVEEESGA--EFLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEV 483
++ + E+ +S K+ L Q+E + + +N ++ + +VC++PEV
Sbjct: 761 LTNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNLRKLEDIPIVCEYPEV 814
Query: 484 FPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVS 543
FP+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS S
Sbjct: 815 FPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTS 874
Query: 544 PWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSG 603
PWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSG
Sbjct: 875 PWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSG 934
Query: 604 YHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFID 663
YHQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFID
Sbjct: 935 YHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFID 994
Query: 664 DILIYSK 670
DILIYSK
Sbjct: 995 DILIYSK 1001
>gb|AAD27547.1| polyprotein [Oryza sativa subsp. indica]
Length = 1521
Score = 414 bits (1065), Expect = e-114
Identities = 253/673 (37%), Positives = 366/673 (53%), Gaps = 41/673 (6%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 92 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 151
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 152 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 210
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVN 199
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 211 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKM---- 263
Query: 200 ERKTKGQQ------SRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN- 252
+RK K Q S +P P +G + R+ + P + F+ G G +++
Sbjct: 264 DRKRKAAQFRAPQGSHQRPRFTPGQQGGPTTMIVRQHR----PFNSSNFHQGSSGSQNHH 319
Query: 253 -------VCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT-- 303
P + G+ + CFN E GH +C +P+++
Sbjct: 320 GSQPNRGAAPRPPMAPAQSGQPAQAKKETGVKPGSCFNCGELGHFADKCPKPRRAGPRFI 379
Query: 304 -GRVFALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNG 362
RV + + ++ T +N+ P + D+GATH FI+ V GL ++
Sbjct: 380 QARVNHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELRT 439
Query: 363 EMVVETPAKGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINY 422
M V TP + S L+ + F +L+ L +DVILGM+WL I+
Sbjct: 440 PMRVHTPGNSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDC 498
Query: 423 FTKSVYFSSVEEESGAE--FLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVV 477
++V ++ + E+ +S KQ L Q+E + + +N ++ + +V
Sbjct: 499 ANRTVTLTNEKGETVVHKSLVSPKQGASLNQIEAE------IPVDTMEKNLRKLEDIPIV 552
Query: 478 CDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKF 537
C++PEVFP+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K +
Sbjct: 553 CEYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGY 612
Query: 538 VRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSK 597
+RPS SPWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSK
Sbjct: 613 IRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSK 672
Query: 598 IDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRF 657
IDLRSGYHQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+F
Sbjct: 673 IDLRSGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKF 732
Query: 658 VVVFIDDILIYSK 670
VVVFIDDILIYSK
Sbjct: 733 VVVFIDDILIYSK 745
>gb|AAY23262.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1416
Score = 414 bits (1065), Expect = e-114
Identities = 254/708 (35%), Positives = 368/708 (51%), Gaps = 64/708 (9%)
Query: 8 QQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQK 61
Q A GNG M L FLR+ PP F +P A WLK+V+R ++QC+ V+K
Sbjct: 52 QHNAHGNGHPHMGNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEK 111
Query: 62 VRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELK 121
+ +HQL A DW + N + +++W F F + PE K+ EF LK
Sbjct: 112 TLYASHQLRGPAADWLENYC-NAHPEPTNISWDEFATAFRAAHVPESTIDMKKEEFNRLK 170
Query: 122 QGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLV 181
QGN V EY ++F +LA + P + K KF G+ ++ + F ++
Sbjct: 171 QGNSSVNEYLSQFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMI 228
Query: 182 NSCRIYEEDTKAHYKVVNERKT--KGQQSR---------------------------PKP 212
N + E+ K + +RK+ +G SR P+P
Sbjct: 229 NKALLLEDARKEATEEYKKRKSNHQGNSSRGALRPRYGQPMQYHQSVTQANRQPGYAPRP 288
Query: 213 -YSAPADKGKQRMVDDRRP-------KKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRC 264
+ PA + +QR K P+ + CF C + GH + CP+
Sbjct: 289 QMNRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQNPTNT--- 345
Query: 265 GKKGHIVADCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRC 323
GH R F Q + GRV + ++ ++
Sbjct: 346 -NSGHANGSTARTPTPAAAQFRPSSQASGQGSRASNHFGRGRVNHIQAETAQDAPDVVMG 404
Query: 324 TCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRC 383
+N+ P + + D+GA+H FI+ V G ++ M+V +P + + T +C
Sbjct: 405 MFSVNSVPAIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQ-ICPEV 463
Query: 384 LLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLST 443
L + DF + L +D+ILGM+WL + I+ KS+ +++ G + T
Sbjct: 464 NLRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSI---TLQGPGGKQVRFT 520
Query: 444 KQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDL 503
+ R IL + SL + + +VC++P+VFP+E+ +P +RE+EF+I+L
Sbjct: 521 PNTPTVSR-SILTCLQVTSL--------ESVPIVCEYPDVFPEELTSMPPDREIEFAIEL 571
Query: 504 ILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCI 563
GT P++ PYRM+A+ELA++K+Q+E+L K +VRP SPWGAPVLLVKK DGS R+ I
Sbjct: 572 APGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPISSPWGAPVLLVKKNDGSERMVI 631
Query: 564 DYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRY 623
DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ KTAFSTRY
Sbjct: 632 DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRY 691
Query: 624 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
G YE+ VM FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 692 GLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 739
>gb|AAP52470.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531762|ref|NP_920183.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|21321760|gb|AAM47295.1| Putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18657020|gb|AAL78107.1| Putative polyprotein [Oryza
sativa]
Length = 1819
Score = 414 bits (1063), Expect = e-113
Identities = 258/669 (38%), Positives = 366/669 (54%), Gaps = 33/669 (4%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 390 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 449
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 450 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 508
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHYKVVN 199
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 509 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKM---- 561
Query: 200 ERKTKGQQ------SRPKPYSAPADKG--KQRMVDDRRPKKKDAPAEITCFNCGEKGHKS 251
+RK K Q S +P P +G +V RP + T + G +
Sbjct: 562 DRKRKAAQFRAHQGSHQRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGGQP 621
Query: 252 N--VCPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRV 306
N P + G+ + CFN E GH +C +P+++ RV
Sbjct: 622 NRGAAPRPPMAPAQSGQPTQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARV 681
Query: 307 FALDGTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVV 366
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V
Sbjct: 682 NHASAEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRV 741
Query: 367 ETPAKGLVTTSLVCLRCLLSMFGRD-FEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTK 425
TP G +TS+ + R F +L+ L G+DVILGM+WL I+ +
Sbjct: 742 HTP--GNSSTSVQFSPSITIEIQRSPFLANLILLDSKGLDVILGMDWLTKFKGVIDCANR 799
Query: 426 SVYFSSVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFE----NQAVIDKLQVVCDFP 481
+V ++ E G E + K L R G+ + + + + N +D + +VC++P
Sbjct: 800 TV---TLTNEKG-ETVVYKSLVS-PRKGVSLNQIETEIPVDTVEKNSRKLDDIPIVCEYP 854
Query: 482 EVFPDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPS 541
EVFP+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS
Sbjct: 855 EVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPS 914
Query: 542 VSPWGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLR 601
SPWGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLR
Sbjct: 915 TSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLR 974
Query: 602 SGYHQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVF 661
SGYHQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVF
Sbjct: 975 SGYHQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVF 1034
Query: 662 IDDILIYSK 670
IDDILIYSK
Sbjct: 1035 IDDILIYSK 1043
>ref|NP_908773.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 413 bits (1062), Expect = e-113
Identities = 247/660 (37%), Positives = 357/660 (53%), Gaps = 15/660 (2%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 92 LPEFLRVRPPTFSSTTNPMEVNDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 151
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 152 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 210
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHY---- 195
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 211 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKMDRKR 267
Query: 196 KVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN--V 253
K R +G Q RP+ +V RP + T + +G + N
Sbjct: 268 KAAQFRSNQGSQHRPRFTPGQQGGPTTMIVRQHRPFNSSNFHQGTSGSQNHQGGQPNRGA 327
Query: 254 CPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFALD 310
P + + + CFN E GH +C +P+++ RV
Sbjct: 328 APRPPMAPAQSAQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS 387
Query: 311 GTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPA 370
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V TP
Sbjct: 388 AEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVRTPG 447
Query: 371 KGLVTTSLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFS 430
+ S L+ + F +L+ L +DVILGM+WL I+ +++V +
Sbjct: 448 NSSTSVSF-SPSVLIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTLT 506
Query: 431 SVEEESGAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPD 490
+ + E+ + S KQ + + +N ++ + +VC++PEVFP+++
Sbjct: 507 NEKGET-VVYKSPGSPKQGVSLNQIETEIPVDTVGKNLRKLEDIPIVCEYPEVFPEDLTT 565
Query: 491 VPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVL 550
+P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS SPWGAPV+
Sbjct: 566 MPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVI 625
Query: 551 LVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVK 610
V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSGYHQ++++
Sbjct: 626 FVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIR 685
Query: 611 DEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSK 670
+ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFIDDILIYSK
Sbjct: 686 EEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSK 745
>ref|NP_914275.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1521
Score = 413 bits (1061), Expect = e-113
Identities = 253/666 (37%), Positives = 364/666 (53%), Gaps = 27/666 (4%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 92 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 151
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 152 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 210
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHY---- 195
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 211 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKMDRKR 267
Query: 196 KVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN--V 253
K R +G Q RP+ +V RP + T + G + N
Sbjct: 268 KAAQFRSNQGSQHRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGGQPNRGA 327
Query: 254 CPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFALD 310
P + G+ + CFN E GH +C +P+++ RV
Sbjct: 328 APRPPMAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS 387
Query: 311 GTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPA 370
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V TP
Sbjct: 388 AEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP- 446
Query: 371 KGLVTTSLVCLRCLLSMFGRD-FEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYF 429
G +TS+ + R F +L+ L +DVILGM+WL I+ +++V
Sbjct: 447 -GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTL 505
Query: 430 SSVEEESGA--EFLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVF 484
++ + E+ +S K+ L Q+E + + +N ++ + +VC++PEVF
Sbjct: 506 TNEKGETVVYKSLVSPKKGASLNQIETE------IPVDTEEKNLRKLEDIPIVCEYPEVF 559
Query: 485 PDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSP 544
P+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS SP
Sbjct: 560 PEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSP 619
Query: 545 WGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGY 604
WGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSGY
Sbjct: 620 WGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGY 679
Query: 605 HQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDD 664
HQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFIDD
Sbjct: 680 HQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDD 739
Query: 665 ILIYSK 670
ILIYSK
Sbjct: 740 ILIYSK 745
>emb|CAD41625.1| OSJNBa0091D06.10 [Oryza sativa (japonica cultivar-group)]
gi|50926837|ref|XP_473332.1| OSJNBa0091D06.10 [Oryza
sativa (japonica cultivar-group)]
Length = 1831
Score = 413 bits (1061), Expect = e-113
Identities = 256/708 (36%), Positives = 370/708 (52%), Gaps = 64/708 (9%)
Query: 8 QQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQK 61
Q A GNG M L FLR+ PP F +P A WLK+V+R ++QC+ V+K
Sbjct: 402 QHNAHGNGHPHMSNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLVQCTPVEK 461
Query: 62 VRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELK 121
+ +HQL A DWW + N + ++ W F F + PE K+ EF LK
Sbjct: 462 TLYASHQLRGPAADWWENYC-NAHPEPTNIAWDEFATAFRAAHVPESTIDMKKEEFNRLK 520
Query: 122 QGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLV 181
QGN V EY + F +LA + P + K KF G+ ++ + F ++
Sbjct: 521 QGNSSVNEYLSMFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLHLLAHDFPTFQHMI 578
Query: 182 NSCRIYEEDTKAHYKVVNERKT--KGQQSR--PKP-YSAPADKGKQRMVDDRRP------ 230
N+ + E+ K + +RK+ +G SR P+P Y P + +R+P
Sbjct: 579 NNALLLEDAGKEATEEYKKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANRQPGYTPRP 638
Query: 231 --------------------------KKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRC 264
K P+ + CF C + GH + CP+
Sbjct: 639 QMNRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSTVQCFRCNQTGHYARQCPQNPTNT--- 695
Query: 265 GKKGHIVADCKRNDIVCFNFNEEGHIGS-QCKQPKKSPTTGRVFALDGTQTENEDRLIRC 323
GH R + S Q + + G V + ++ ++
Sbjct: 696 -NSGHANGSTARTPTPAVAPSRPSSQASGQGSRASNNFGRGWVNHIQAETAQDAPDVVMG 754
Query: 324 TCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRC 383
+N+ P + + D+GA++ FI+ V G ++ M+V +P + + T VC
Sbjct: 755 MFSVNSVPAIVLFDSGASYSFISQAFVKRNGWKTQNLRLPMIVHSPGRNIRATQ-VCPEV 813
Query: 384 LLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLST 443
L + DF + L +D+ILGM+WL + I+ KS+ +++ G + T
Sbjct: 814 NLRIEEVDFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSI---TLQGPGGKQVRFT 870
Query: 444 KQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDL 503
R IL + SL + + +VC++P+VFP+E+ +P +RE+EF+I+L
Sbjct: 871 SNTPTASRS-ILTCLQVTSL--------ESVPIVCEYPDVFPEELTSMPPDREIEFAIEL 921
Query: 504 ILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCI 563
GT P++ PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKDGS R+ I
Sbjct: 922 APGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVI 981
Query: 564 DYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRY 623
DYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ KTAFSTRY
Sbjct: 982 DYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRY 1041
Query: 624 GHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
G YE+ VM FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 1042 GPYEFTVMSFGLTNAPVFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 1089
>emb|CAE03484.2| OSJNBa0065O17.9 [Oryza sativa (japonica cultivar-group)]
gi|50927889|ref|XP_473472.1| OSJNBa0065O17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1851
Score = 413 bits (1061), Expect = e-113
Identities = 252/715 (35%), Positives = 366/715 (50%), Gaps = 64/715 (8%)
Query: 1 AVAQAVGQQPAAGNGEVRM------LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVM 54
A A A Q GNG + L FLR+ PP F +P A WLK+V+R ++
Sbjct: 393 AAAIAGFQHNTHGNGHPHISNNRSKLTDFLRSRPPEFSQTVEPVEADDWLKDVDRKLNLV 452
Query: 55 QCSEVQKVRFGTHQLAEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKE 114
QC+ V+K + +HQL A DWW + N + ++ W F F + PE K+
Sbjct: 453 QCTPVEKTLYASHQLRGPAADWWENYC-NAHPEPTNIAWDEFATAFRTAHVPESAIDMKK 511
Query: 115 IEFLELKQGNMYVTEYAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQI 174
EF LKQGN V EY + F +LA + P + K KF G+ ++ +
Sbjct: 512 EEFNRLKQGNSSVNEYLSMFNKLARYAPEEV--DTDKKKIRKFFKGIVVGMRLQLIAHDF 569
Query: 175 RVFPDLVNSCRIYEEDTKAHYKVVNERKT--KGQQSR--PKP-YSAPADKGKQRMVDDRR 229
F ++N + E+ K + +RK+ KG SR P+P Y P + +R+
Sbjct: 570 PTFQHMINKALLLEDARKEATEEYKKRKSNHKGNSSRGAPRPCYGQPMQYHQSVTQANRQ 629
Query: 230 P--------------------------------KKKDAPAEITCFNCGEKGHKSNVCPEE 257
P K P+ + CF C + GH + CP+
Sbjct: 630 PGYAPRPQMNRPAPQPQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQN 689
Query: 258 IKKCVRCGKKGHIVADCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTEN 316
GH R Q + GRV + ++
Sbjct: 690 PTNT----NSGHANGSTARTPTPAAAQSRPSSQASGQGSHVSNNFGRGRVNHIQAETAQD 745
Query: 317 EDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTT 376
++ +N+ P + + D+GA+H I+ V G ++ M++ +P + + T
Sbjct: 746 ATDVVMGMFSVNSVPAIVLFDSGASHSIISQAFVKRNGWKTQNLRVPMIIHSPGRNIRAT 805
Query: 377 SLVCLRCLLSMFGRDFEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEES 436
+C L + +F + L +D+ILGM+WL + I+ KS+ +++
Sbjct: 806 Q-ICPEVNLRIEEVNFLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAKKSI---TLQGPR 861
Query: 437 GAEFLSTKQLKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLERE 496
G + T R + L+ ++ + +VC++P+VFP+E+ +P +RE
Sbjct: 862 GKQVRFTSNTPTTSR---------SILTCLQVTTLESVPIVCEYPDVFPEELTSMPPDRE 912
Query: 497 VEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKD 556
+EF+I L GT P++ PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKD
Sbjct: 913 IEFAIKLAPGTAPIAKRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKD 972
Query: 557 GSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQK 616
GS R+ IDYR LN+VTIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ K
Sbjct: 973 GSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPK 1032
Query: 617 TAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
TAFSTRYG YE+ VM FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 1033 TAFSTRYGLYEFTVMSFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 1087
>gb|AAP52970.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532762|ref|NP_920683.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|20042987|gb|AAM08795.1| Putative retroelement [Oryza
sativa]
Length = 1785
Score = 412 bits (1060), Expect = e-113
Identities = 253/666 (37%), Positives = 364/666 (53%), Gaps = 27/666 (4%)
Query: 20 LETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQLAEEADDWWVS 79
L FLR PP F +P A WL +E+ ++QC++ +KV F THQL A WW +
Sbjct: 356 LPEFLRVRPPTFSSTTNPMEANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDN 415
Query: 80 LLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTEYAAKFVELAE 139
+ G +VTWA F R F + P+ V +K+ EF L QGN VTEY +F LA
Sbjct: 416 HMATRPP-GTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLAR 474
Query: 140 FYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEEDTKAHY---- 195
+ P E K KF GL ++ + F LV+ I +ED +
Sbjct: 475 YAPEDVRTDAE--KQEKFMAGLDDELTNQLISGDYADFERLVDKA-IRQEDQRNKMDRKR 531
Query: 196 KVVNERKTKGQQSRPKPYSAPADKGKQRMVDDRRPKKKDAPAEITCFNCGEKGHKSN--V 253
K R +G Q RP+ +V RP + T + G + N
Sbjct: 532 KAAQFRSNQGSQHRPRFTPGQQGGPTTMIVRQHRPFNPSNFHQGTSGSQNHHGSQPNRGT 591
Query: 254 CPEEIKKCVRCGKKGHIVADCKRNDIVCFNFNEEGHIGSQCKQPKKSPTT---GRVFALD 310
P + G+ + CFN E GH +C +P+++ RV
Sbjct: 592 APRPSVAPAQSGQPAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHAS 651
Query: 311 GTQTENEDRLIRCTCYINNTPLVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPA 370
+ + ++ T +N+ P + D+GATH FI+ V GL +++ M V TP
Sbjct: 652 AEEAQAAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMHGLIREELSTPMRVHTP- 710
Query: 371 KGLVTTSLVCLRCLLSMFGRD-FEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYF 429
G +TS+ + R F +L+ L +DVILGM+WL I+ +++V
Sbjct: 711 -GNSSTSVQFSPSITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCASRTVTL 769
Query: 430 SSVEEESGA--EFLSTKQ---LKQMERDGILMYPLMASLSFENQAVIDKLQVVCDFPEVF 484
++ + E+ +S K+ L Q+E + + +N ++ + +VC++PEVF
Sbjct: 770 TNEKGETVVYKSLVSPKKGVSLNQIETE------IPVDTVEKNLRKLEDIPIVCEYPEVF 823
Query: 485 PDEIPDVPLEREVEFSIDLILGTKPVSMAPYRMSASELAKLKKQLEDLLEKKFVRPSVSP 544
P+++ +P +RE+EF IDL GT P+ PYRM+A+ELA++KKQ+++ L+K ++RPS SP
Sbjct: 824 PEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSP 883
Query: 545 WGAPVLLVKKKDGSMRLCIDYRQLNKVTIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGY 604
WGAPV+ V+KKD + R+C+DYR LN+VTIKN+YPLPRIDDL DQL GAKVFSKIDLRSGY
Sbjct: 884 WGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGY 943
Query: 605 HQIKVKDEDMQKTAFSTRYGHYEYKVMPFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDD 664
HQ+++++ED+ KTAF+TRYG YE VM FG+TNAP FM MN++F FLD+FVVVFIDD
Sbjct: 944 HQLRIREEDIPKTAFTTRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDD 1003
Query: 665 ILIYSK 670
ILIYSK
Sbjct: 1004 ILIYSK 1009
>ref|XP_473979.1| OSJNBb0060E08.21 [Oryza sativa (japonica cultivar-group)]
gi|32489661|emb|CAE04240.1| OSJNBa0089N06.1 [Oryza sativa
(japonica cultivar-group)] gi|57834090|emb|CAE04759.2|
OSJNBb0060E08.22 [Oryza sativa (japonica cultivar-group)]
Length = 1851
Score = 412 bits (1058), Expect = e-113
Identities = 250/700 (35%), Positives = 366/700 (51%), Gaps = 59/700 (8%)
Query: 10 PAAGNGEVRMLETFLRNHPPAFKGRYDPDGAQTWLKEVERIFRVMQCSEVQKVRFGTHQL 69
P GN ++ + FLR+ PP F +P A WLK+V+R ++QC+ V+K + +HQL
Sbjct: 409 PHVGNNRSKLTD-FLRSRPPEFSQTIEPVEADDWLKDVDRKLNLVQCTPVEKTLYASHQL 467
Query: 70 AEEADDWWVSLLPNLDQDGVDVTWAVF*REFMRRYFPEDVRRKKEIEFLELKQGNMYVTE 129
A DWW + N + ++ W F F + PE K+ EF LKQG+ V E
Sbjct: 468 RGPAADWWENYC-NAHPEPTNIAWDEFATAFRVAHVPESTIDMKKEEFNRLKQGHSSVNE 526
Query: 130 YAAKFVELAEFYPHYAAETVEFSKCIKFENGLRPDIKRAIEYQQIRVFPDLVNSCRIYEE 189
Y ++F +LA + P + K KF G+ ++ + F ++N + E+
Sbjct: 527 YLSQFNKLARYAPEEV--DTDKKKIRKFLKGIAVGMRLQLLAHDFPTFQHMINKALLLED 584
Query: 190 DTKAHYKVVNERKT--KGQQSR---------------------------PKPY-SAPADK 219
K + +RK+ +G SR P+P + PA
Sbjct: 585 ARKEATEEYKKRKSNHQGNSSRGAPRPRYGQPMQYHQSVTQANRQSSYAPRPQMNRPAPP 644
Query: 220 GKQRMVDDRRP-------KKKDAPAEITCFNCGEKGHKSNVCPEEIKKCVRCGKKGHIVA 272
+QR K P+ + CF C + GH + CP+ GH
Sbjct: 645 PQQRAPSGNTAPNSVTSFKSPQGPSAVQCFRCNQMGHYARQCPQNPTNT----SPGHANG 700
Query: 273 DCKRNDI-VCFNFNEEGHIGSQCKQPKKSPTTGRVFALDGTQTENEDRLIRCTCYINNTP 331
R Q + GRV + ++ ++ +N+ P
Sbjct: 701 STARTPTPAAAQSRPSSQASGQGSRASNHFGRGRVNHIQAETAQDAPDVVMGMFSVNSVP 760
Query: 332 LVAIIDTGATHCFIAFDCVSALGLDLFDMNGEMVVETPAKGLVTTSLVCLRCLLSMFGRD 391
+ + D+GA+H FI+ V G ++ M+V +P + + T +C L + +
Sbjct: 761 AIVLFDSGASHSFISQAFVKRNGWKTQNLRVPMIVHSPGRNIRATQ-ICPEVNLRIEEVN 819
Query: 392 FEMDLVCLPLSGMDVILGMNWLEYNHVHINYFTKSVYFSSVEEESGAEFLSTKQLKQMER 451
F + L +D+ILGM+WL + I+ KS+ +++ G + T R
Sbjct: 820 FLAKPIVLDSQSLDIILGMDWLAKHKGQIDCAEKSI---TLQGPGGKQVRFTPNTPTASR 876
Query: 452 DGILMYPLMASLSFENQAVIDKLQVVCDFPEVFPDEIPDVPLEREVEFSIDLILGTKPVS 511
IL + SL + + +VC++P+VFP+E+ +P +RE+EF+I+L GT P++
Sbjct: 877 S-ILTCLQVTSL--------ESVPIVCEYPDVFPEELTRMPPDREIEFAIELAPGTAPIA 927
Query: 512 MAPYRMSASELAKLKKQLEDLLEKKFVRPSVSPWGAPVLLVKKKDGSMRLCIDYRQLNKV 571
PYRM+A+ELA++K+Q+E+L K +VRPS SPWGAPVLLVKKKDGS R+ IDYR LN+V
Sbjct: 928 KRPYRMAANELAEVKRQIEELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEV 987
Query: 572 TIKNRYPLPRIDDLMDQLVGAKVFSKIDLRSGYHQIKVKDEDMQKTAFSTRYGHYEYKVM 631
TIKN+YPLPRIDDL DQL GA+VFSKIDLRSGYHQ+K++ ED+ KTAFSTRYG YE+ VM
Sbjct: 988 TIKNKYPLPRIDDLFDQLKGARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVM 1047
Query: 632 PFGVTNAPGVFMEYMNRIFHAFLDRFVVVFIDDILIYSKD 671
FG+TNAP FM MN+IF +LD+FVVVFIDDILIYSK+
Sbjct: 1048 SFGLTNAPAFFMNLMNKIFMEYLDQFVVVFIDDILIYSKN 1087
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.349 0.155 0.537
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,136,745,366
Number of Sequences: 2540612
Number of extensions: 83285532
Number of successful extensions: 449808
Number of sequences better than 10.0: 38034
Number of HSP's better than 10.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 35845
Number of HSP's that attempted gapping in prelim test: 364206
Number of HSP's gapped (non-prelim): 52432
length of query: 1478
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1337
effective length of database: 505,134,102
effective search space: 675364294374
effective search space used: 675364294374
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 82 (36.2 bits)
Medicago: description of AC141111.5