BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.4 - phase: 0 /pseudo
(1069 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [... 89 6e-16
emb|CAC44110.1| gag polyprotein [Cicer arietinum] 67 3e-09
gb|AAS54018.1| AFR646Wp [Ashbya gossypii ATCC 10895] gi|45199165... 67 4e-09
emb|CAG61002.1| unnamed protein product [Candida glabrata CBS138... 65 9e-09
pir||S42136 cnjB protein - Tetrahymena thermophila gi|161752|gb|... 65 2e-08
gb|AAO45751.1| gag-protease polyprotein [Cucumis melo] 63 5e-08
emb|CAA45345.1| cellular nucleic acid binding protein clone 6 [M... 63 6e-08
ref|NP_072120.1| cellular nucleic acid binding protein 1 [Rattus... 63 6e-08
gb|AAH00288.1| ZNF9 protein [Homo sapiens] gi|15928890|gb|AAH149... 63 6e-08
ref|NP_038521.1| cellular nucleic acid binding protein 1 [Mus mu... 63 6e-08
ref|NP_990238.1| cellular nucleic acid binding protein [Gallus g... 63 6e-08
ref|XP_533724.1| PREDICTED: similar to Cellular nucleic acid bin... 63 6e-08
ref|XP_516737.1| PREDICTED: similar to nucleic acid binding prot... 63 6e-08
ref|XP_581011.1| PREDICTED: similar to cellular nucleic acid bin... 63 6e-08
gb|AAV38418.1| zinc finger protein 9 (a cellular retroviral nucl... 63 6e-08
gb|AAV38417.1| zinc finger protein 9 (a cellular retroviral nucl... 63 6e-08
gb|AAB88490.1| cellular nucleic acid binding protein [Gallus gal... 63 6e-08
dbj|BAC37269.1| unnamed protein product [Mus musculus] 63 6e-08
emb|CAG11355.1| unnamed protein product [Tetraodon nigroviridis] 62 8e-08
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 62 1e-07
>gb|AAP53268.1| putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa
(japonica cultivar-group)] gi|37533358|ref|NP_920981.1|
putative 22 kDa kafirin cluster; Ty3-Gypsy type [Oryza
sativa (japonica cultivar-group)]
gi|21327374|gb|AAM48279.1| Putative 22 kDa kafirin
cluster; Ty3-Gypsy type [Oryza sativa (japonica
cultivar-group)] gi|18767374|gb|AAL79340.1| Putative 22
kDa kafirin cluster; Ty3-Gypsy type [Oryza sativa]
Length = 1230
Score = 89.4 bits (220), Expect = 6e-16
Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 12/180 (6%)
Query: 1 RREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPHYTAETAEFSKCIK 60
+ F +YFPE V+ KE EFLELKQG+ SV EY +F LA+F P + + SK +
Sbjct: 147 KEAFYKKYFPESVKRMKEKEFLELKQGNKSVAEYEIEFSRLARFAPEFV--QTDGSKARR 204
Query: 61 IENGLRADIKRAIGYQKIRNFSELVSSCRIYEEDTKAHYKVMSERRGKGQLSRPKPYSAP 120
E+GLR +KR + ++ F E+VS ++ E K +++ +R GQ + + P
Sbjct: 205 FESGLRQPLKRRVEAFELTIFREVVSKAQLLE---KGYHE---QRIEHGQPQKKFKTNNP 258
Query: 121 PDKGK*RLKDERRPKMRDAPTDIVCFKCG--EKGHKSNVCDRDEKKCFRCGKKGHTLADC 178
++G R + +M+ ++ KC + H ++C +CF CG+ GHT C
Sbjct: 259 QNQG--RFRGNYSGQMQRKSSENQGRKCPICQGSHVPSICPNCWGRCFECGEAGHTRYQC 316
Score = 49.3 bits (116), Expect = 7e-04
Identities = 24/34 (70%), Positives = 30/34 (87%), Gaps = 1/34 (2%)
Query: 557 LDKFVVVFIDDILIYSETEEEHAEHLK*VFLATL 590
LD+FVVVFIDDILIYS+T+E+HA HL+ + L TL
Sbjct: 641 LDQFVVVFIDDILIYSKTKEDHANHLR-IVLQTL 673
>emb|CAC44110.1| gag polyprotein [Cicer arietinum]
Length = 277
Score = 67.0 bits (162), Expect = 3e-09
Identities = 34/93 (36%), Positives = 56/93 (59%)
Query: 1 RREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPHYTAETAEFSKCIK 60
+R+FL++YFP R K +FL+L QG ++V EYAAKF L++ + + E E C +
Sbjct: 133 KRKFLDKYFPMSTRTKLGDDFLKLHQGSLTVGEYAAKFESLSRHFRFFREEIDEPFMCHR 192
Query: 61 IENGLRADIKRAIGYQKIRNFSELVSSCRIYEE 93
++GL+ +I+ ++ I+ F LV CR E+
Sbjct: 193 FQDGLKYEIQDSVLPLGIQRFQALVEKCREVED 225
>gb|AAS54018.1| AFR646Wp [Ashbya gossypii ATCC 10895] gi|45199165|ref|NP_986194.1|
AFR646Wp [Eremothecium gossypii]
Length = 163
Score = 66.6 bits (161), Expect = 4e-09
Identities = 29/74 (39%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Query: 127 RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKRG--DIV 184
R + R + C++CG H + C +DE KC+ CGK GH DC G +
Sbjct: 87 RFSNSSRSSFSGRLNKVSCYRCGGPNHMAKDCLQDETKCYSCGKSGHISRDCPSGPSEKT 146
Query: 185 CYNFNEEGHISLQC 198
CYN NE GHIS C
Sbjct: 147 CYNCNESGHISRDC 160
Score = 53.9 bits (128), Expect = 3e-05
Identities = 21/66 (31%), Positives = 36/66 (53%), Gaps = 6/66 (9%)
Query: 144 VCFKCGEKGHKSNVC----DRDEKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCT 199
+C+ C GH + C + K+C+ CG+ GH +C C+N ++ GH+S CT
Sbjct: 24 LCYNCNMPGHIQSECTLPRSAEHKQCYNCGETGHVRGECNIQK--CFNCSQAGHVSRDCT 81
Query: 200 QPKKVR 205
+P++ R
Sbjct: 82 EPRRSR 87
Score = 47.0 bits (110), Expect = 0.003
Identities = 22/80 (27%), Positives = 30/80 (37%), Gaps = 18/80 (22%)
Query: 145 CFKCGEKGHKSNVCDRDEKK------------------CFRCGKKGHTLADCKRGDIVCY 186
CF C + GH S C + C+RCG H DC + + CY
Sbjct: 67 CFNCSQAGHVSRDCTEPRRSRFSNSSRSSFSGRLNKVSCYRCGGPNHMAKDCLQDETKCY 126
Query: 187 NFNEEGHISLQCTQPKKVRT 206
+ + GHIS C +T
Sbjct: 127 SCGKSGHISRDCPSGPSEKT 146
Score = 44.3 bits (103), Expect = 0.022
Identities = 20/41 (48%), Positives = 26/41 (62%), Gaps = 1/41 (2%)
Query: 162 EKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPK 202
+K C+ CGK GH LAD + +CYN N GHI +CT P+
Sbjct: 3 QKACYVCGKLGH-LADNCDSERLCYNCNMPGHIQSECTLPR 42
>emb|CAG61002.1| unnamed protein product [Candida glabrata CBS138]
gi|50291237|ref|XP_448051.1| unnamed protein product
[Candida glabrata]
Length = 155
Score = 65.5 bits (158), Expect = 9e-09
Identities = 28/71 (39%), Positives = 40/71 (55%), Gaps = 2/71 (2%)
Query: 130 DERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKRG--DIVCYN 187
+ R+ + A ++ C+KCG H + C + + KC+ CG+ GH DC G + VCYN
Sbjct: 82 EPRKGRFGAASKNVSCYKCGGPNHVARDCMQTDTKCYSCGRFGHVSRDCPNGPNEKVCYN 141
Query: 188 FNEEGHISLQC 198
NE GHIS C
Sbjct: 142 CNETGHISRDC 152
Score = 60.1 bits (144), Expect = 4e-07
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDR----DEKKCFRCGKKGHTLADCKRGDIVCYNFNEEGH 193
D ++ +C+ C + GH + C + K+C+ CG+ GH ++C C+N N+ GH
Sbjct: 18 DCDSERLCYNCNQPGHVQSECTMPRTVEHKQCYNCGETGHVKSECSIQR--CFNCNQTGH 75
Query: 194 ISLQCTQPKKVRTG 207
+S +C +P+K R G
Sbjct: 76 VSRECPEPRKGRFG 89
Score = 48.5 bits (114), Expect = 0.001
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 162 EKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKV 204
+K C+ CGK GH DC + +CYN N+ GH+ +CT P+ V
Sbjct: 3 QKACYVCGKIGHLADDCD-SERLCYNCNQPGHVQSECTMPRTV 44
Score = 42.4 bits (98), Expect = 0.084
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC---KRG-------DIVCYNFNEEGHI 194
C+ CGE GH + C ++CF C + GH +C ++G ++ CY H+
Sbjct: 49 CYNCGETGHVKSECSI--QRCFNCNQTGHVSRECPEPRKGRFGAASKNVSCYKCGGPNHV 106
Query: 195 SLQCTQ 200
+ C Q
Sbjct: 107 ARDCMQ 112
>pir||S42136 cnjB protein - Tetrahymena thermophila gi|161752|gb|AAC37171.1| cnjB
[Tetrahymena thermophila] gi|737494|prf||1922371A cnjB
gene
Length = 1748
Score = 64.7 bits (156), Expect = 2e-08
Identities = 30/82 (36%), Positives = 43/82 (51%), Gaps = 9/82 (10%)
Query: 135 KMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-----CFRCGKKGHTLADCKR----GDIVC 185
+ + P CFKCGE+GH S C +K+ CF+C ++GH DC G C
Sbjct: 1520 QQQQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKDCPNSQNSGGNKC 1579
Query: 186 YNFNEEGHISLQCTQPKKVRTG 207
+N N+EGH+S C P + + G
Sbjct: 1580 FNCNQEGHMSKDCPNPSQKKKG 1601
Score = 62.8 bits (151), Expect = 6e-08
Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK---CFRCGKKGHTLADC------- 178
KD P+ + CFKC ++GH S C ++K CF+CG++GH DC
Sbjct: 1462 KDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDCPNPQKQQ 1521
Query: 179 --KRGDIVCYNFNEEGHISLQCTQPKKVRTGGKVFALTGTQTVNED 222
K C+ EEGHIS C P+K + F +++D
Sbjct: 1522 QQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKD 1567
Score = 58.5 bits (140), Expect = 1e-06
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 13/71 (18%)
Query: 145 CFKCGEKGHKSNVCDRDEK----KCFRCGKKGHTLADC------KRGDIVCYNFNEEGHI 194
CFKC ++GH S C + KCF C ++GH DC K+G C+N EEGH
Sbjct: 1555 CFKCKQEGHISKDCPNSQNSGGNKCFNCNQEGHMSKDCPNPSQKKKG---CFNCGEEGHQ 1611
Query: 195 SLQCTQPKKVR 205
S +CT+ +K R
Sbjct: 1612 SRECTKERKER 1622
Score = 53.9 bits (128), Expect = 3e-05
Identities = 24/69 (34%), Positives = 36/69 (51%), Gaps = 10/69 (14%)
Query: 145 CFKCGEKGHKSNVCDRDEKK-------CFRCGKKGHTLADC---KRGDIVCYNFNEEGHI 194
CFKCG+ GH + C +++ CF+C ++GH DC ++ C+ EEGH
Sbjct: 1451 CFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHF 1510
Query: 195 SLQCTQPKK 203
S C P+K
Sbjct: 1511 SKDCPNPQK 1519
Score = 43.1 bits (100), Expect = 0.049
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 163 KKCFRCGKKGHTLADC-------KRGDIVCYNFNEEGHISLQCTQPKKVRTG 207
K CF+CGK GH DC ++ C+ N+EGH+S C ++ ++G
Sbjct: 1449 KGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSG 1500
>gb|AAO45751.1| gag-protease polyprotein [Cucumis melo]
Length = 429
Score = 63.2 bits (152), Expect = 5e-08
Identities = 60/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 1 RREFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPHYTAETAEFSKCIK 60
+ F ++F +R K EFL L+QGDM+V +Y A+F L++F P A E ++ K
Sbjct: 138 KESFYAKFFSASLRDAKRQEFLNLEQGDMTVEQYDAEFDMLSRFAPEMIA--TEAARADK 195
Query: 61 IENGLRADIKRAI-GYQKIRNFSELVSSCRIYEEDTKAHYKVMSERRGKGQLSRPKPYSA 119
GLR DI+ + ++ + L + + ++ K GQ + +
Sbjct: 196 FVRGLRLDIQGLVRAFRPATHADALRLAVDLSLQERANSSKTAGRGSTSGQKRKAEQQPV 255
Query: 120 PPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK 179
P + R E R + P F+ GE R + C CGK H L C
Sbjct: 256 PVPQRNFRPGGEFR-SFQQKP-----FEAGEAA-------RGKPLCTTCGK--HHLGRCL 300
Query: 180 RGDIVCYNFNEEGHISLQC---------TQPKKVRTGGKVFALTGTQTVNED*LIRGT 228
G C+ +EGH + +C Q G+ FA T+ ++ GT
Sbjct: 301 FGTRTCFKCRQEGHTADRCPLRVTGIAQNQGAGAPHQGRAFATNRTEAEKAGTVVTGT 358
>emb|CAA45345.1| cellular nucleic acid binding protein clone 6 [Mus musculus]
gi|50473|emb|CAA77896.1| cellular nucleic acid binding
protein clone 6 [Mus musculus]
Length = 170
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 78 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 132
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 133 CGETGHVAINCSKTSEV 149
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 112 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165
Score = 55.5 bits (132), Expect = 1e-05
Identities = 26/82 (31%), Positives = 34/82 (40%), Gaps = 21/82 (25%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---------------------CFRCGKKGHTLADCKRGDI 183
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 184 VCYNFNEEGHISLQCTQPKKVR 205
CYN GHI+ C +PK+ R
Sbjct: 66 ACYNCGRGGHIAKDCKEPKRER 87
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 126 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
>ref|NP_072120.1| cellular nucleic acid binding protein 1 [Rattus norvegicus]
gi|62205335|gb|AAH93058.1| Zinc finger protein 9 [Homo
sapiens] gi|40738013|gb|AAR89462.1| zinc finger protein
9 [Homo sapiens] gi|40738017|gb|AAR89464.1| cellular
nucleic acid binding protein [Rattus norvegicus]
gi|67970964|dbj|BAE01824.1| unnamed protein product
[Macaca fascicularis] gi|8650478|gb|AAF78224.1| cellular
nucleic acid binding protein [Rattus norvegicus]
gi|55732400|emb|CAH92901.1| hypothetical protein [Pongo
pygmaeus] gi|38328236|gb|AAH62225.1| Cellular nucleic
acid binding protein 1 [Rattus norvegicus]
gi|4827071|ref|NP_003409.1| zinc finger protein 9 [Homo
sapiens] gi|50401852|sp|P62633|CNBP_HUMAN Cellular
nucleic acid binding protein (CNBP) (Zinc finger protein
9) gi|50401851|sp|P62634|CNBP_RAT Cellular nucleic acid
binding protein (CNBP) (Zinc finger protein 9)
gi|26344578|dbj|BAC35938.1| unnamed protein product [Mus
musculus] gi|790571|gb|AAA91782.1| nucleic acid binding
protein gi|809511|dbj|BAA08212.1| Cellular Nucleic Acid
Binding Protein [Rattus norvegicus]
gi|643576|gb|AAA61975.1| SRE-binding protein
Length = 177
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 85 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 139
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 140 CGETGHVAINCSKTSEV 156
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 119 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 52.8 bits (125), Expect = 6e-05
Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 28/89 (31%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCKRGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>gb|AAH00288.1| ZNF9 protein [Homo sapiens] gi|15928890|gb|AAH14911.1| ZNF9 protein
[Homo sapiens] gi|55730956|emb|CAH92196.1| hypothetical
protein [Pongo pygmaeus] gi|2136380|pir||A55499 zinc
finger protein 9 - human gi|292348|gb|AAA89198.1|
nucleic acid binding protein
Length = 170
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 78 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 132
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 133 CGETGHVAINCSKTSEV 149
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 112 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165
Score = 55.5 bits (132), Expect = 1e-05
Identities = 26/82 (31%), Positives = 34/82 (40%), Gaps = 21/82 (25%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---------------------CFRCGKKGHTLADCKRGDI 183
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 184 VCYNFNEEGHISLQCTQPKKVR 205
CYN GHI+ C +PK+ R
Sbjct: 66 ACYNCGRGGHIAKDCKEPKRER 87
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 126 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
>ref|NP_038521.1| cellular nucleic acid binding protein 1 [Mus musculus]
gi|40738015|gb|AAR89463.1| cellular nucleic acid binding
protein [Mus musculus] gi|54696094|gb|AAV38419.1| zinc
finger protein 9 (a cellular retroviral nucleic acid
binding protein) [Homo sapiens]
gi|30059133|gb|AAO31613.1| cellular nucleic acid binding
protein [Mus musculus] gi|37194897|gb|AAH58723.1|
Cellular nucleic acid binding protein 1 [Mus musculus]
gi|50403746|sp|P53996|CNBP_MOUSE Cellular nucleic acid
binding protein (CNBP) (Zinc finger protein 9)
gi|854675|gb|AAB60490.1| cellular nucleic acid binding
protein gi|2137214|pir||I49259 cellular nucleic acid
binding protein - mouse
Length = 178
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 86 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 140
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 141 CGETGHVAINCSKTSEV 157
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEG 192
D D C+ CG GH + C +++ C+ CGK GH DC D CY+ E G
Sbjct: 68 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 127
Query: 193 HISLQCTQPKKVRTG 207
HI CT+ K R G
Sbjct: 128 HIQKDCTKVKCYRCG 142
Score = 57.8 bits (138), Expect = 2e-06
Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 144 VCFKCGEKGHKSNVCD-RDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD ++++ C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 112
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 120 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 173
Score = 50.8 bits (120), Expect = 2e-04
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 29/90 (32%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCK-RGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + D CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDEACYNCGRGGHIAKDCKEPKRER 95
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 134 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172
>ref|NP_990238.1| cellular nucleic acid binding protein [Gallus gallus]
gi|2232217|gb|AAB62243.1| cellular nucleic acid binding
protein [Gallus gallus] gi|6225175|sp|O42395|CNBP_CHICK
Cellular nucleic acid binding protein (CNBP)
Length = 172
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 80 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 134
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 135 CGETGHVAINCSKTSEV 151
Score = 59.3 bits (142), Expect = 7e-07
Identities = 23/60 (38%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 144 VCFKCGEKGHKSNVCD-RDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD +++K C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 47 ICYRCGESGHLAKDCDLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEG 192
D D C+ CG GH + C +++ C+ CGK GH DC D CY+ E G
Sbjct: 62 DLQEDKACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 193 HISLQCTQPKKVRTG 207
HI CT+ K R G
Sbjct: 122 HIQKDCTKVKCYRCG 136
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 114 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
Score = 52.4 bits (124), Expect = 8e-05
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 23/84 (27%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------CFRCGKKGHTLADCK-RG 181
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 182 DIVCYNFNEEGHISLQCTQPKKVR 205
D CYN GHI+ C +PK+ R
Sbjct: 66 DKACYNCGRGGHIAKDCKEPKRER 89
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 128 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
>ref|XP_533724.1| PREDICTED: similar to Cellular nucleic acid binding protein (CNBP)
(Zinc finger protein 9) [Canis familiaris]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 79 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 133
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 134 CGETGHVAINCSKTSEV 150
Score = 58.9 bits (141), Expect = 9e-07
Identities = 37/111 (33%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Query: 106 RGKGQLSRPKPY----SAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRD 161
RG+G SR + + S+ PD + K D D C+ CG GH + C
Sbjct: 25 RGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEP 84
Query: 162 EKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEGHISLQCTQPKKVRTG 207
+++ C+ CGK GH DC D CY+ E GHI CT+ K R G
Sbjct: 85 KREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCG 135
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 113 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 166
Score = 53.5 bits (127), Expect = 4e-05
Identities = 27/83 (32%), Positives = 35/83 (41%), Gaps = 22/83 (26%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---------------------CFRCGKKGHTLADCK-RGD 182
CFKCG GH + C + C+RCG+ GH DC + D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 183 IVCYNFNEEGHISLQCTQPKKVR 205
CYN GHI+ C +PK+ R
Sbjct: 66 EACYNCGRGGHIAKDCKEPKRER 88
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 127 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 165
>ref|XP_516737.1| PREDICTED: similar to nucleic acid binding protein [Pan
troglodytes]
Length = 405
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 313 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 367
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 368 CGETGHVAINCSKTSEV 384
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 281 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 339
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 347 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 400
Score = 56.2 bits (134), Expect = 6e-06
Identities = 33/114 (28%), Positives = 48/114 (41%), Gaps = 27/114 (23%)
Query: 114 PKPYS-APPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKK-------- 164
P+P S +PP + + +D + A + CFKCG GH + C +
Sbjct: 214 PRPASESPPLRARCDAED-----LTAAMSSNECFKCGRSGHWARECPTGGGRGRGMRSRG 268
Query: 165 -------------CFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQPKKVR 205
C+RCG+ GH DC + CYN GHI+ C +PK+ R
Sbjct: 269 RGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKRER 322
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 361 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 399
>ref|XP_581011.1| PREDICTED: similar to cellular nucleic acid binding protein 1 [Bos
taurus] gi|16549164|dbj|BAB70769.1| unnamed protein
product [Homo sapiens]
Length = 167
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 75 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 129
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 130 CGETGHVAINCSKTSEV 146
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 43 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 101
Score = 58.5 bits (140), Expect = 1e-06
Identities = 27/79 (34%), Positives = 34/79 (42%), Gaps = 18/79 (22%)
Query: 145 CFKCGEKGHKSNVCDR------------------DEKKCFRCGKKGHTLADCKRGDIVCY 186
CFKCG GH + C D C+RCG+ GH DC + CY
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRDICYRCGESGHLAKDCDLQEDACY 65
Query: 187 NFNEEGHISLQCTQPKKVR 205
N GHI+ C +PK+ R
Sbjct: 66 NCGRGGHIAKDCKEPKRER 84
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 109 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 162
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 123 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 161
>gb|AAV38418.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [synthetic construct]
gi|61368826|gb|AAX43243.1| zinc finger protein 9
[synthetic construct]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 78 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 132
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 133 CGETGHVAINCSKTSEV 149
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 46 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 104
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 112 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 165
Score = 55.5 bits (132), Expect = 1e-05
Identities = 26/82 (31%), Positives = 34/82 (40%), Gaps = 21/82 (25%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---------------------CFRCGKKGHTLADCKRGDI 183
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 184 VCYNFNEEGHISLQCTQPKKVR 205
CYN GHI+ C +PK+ R
Sbjct: 66 ACYNCGRGGHIAKDCKEPKRER 87
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 126 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164
>gb|AAV38417.1| zinc finger protein 9 (a cellular retroviral nucleic acid binding
protein) [synthetic construct]
gi|61368820|gb|AAX43242.1| zinc finger protein 9
[synthetic construct]
Length = 178
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 85 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 139
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 140 CGETGHVAINCSKTSEV 156
Score = 60.8 bits (146), Expect = 2e-07
Identities = 23/59 (38%), Positives = 33/59 (54%), Gaps = 4/59 (6%)
Query: 144 VCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD E C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 53 ICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 111
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 119 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 172
Score = 52.8 bits (125), Expect = 6e-05
Identities = 26/89 (29%), Positives = 34/89 (37%), Gaps = 28/89 (31%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------------CFRCGKKGHTLA 176
CFKCG GH + C + C+RCG+ GH
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65
Query: 177 DCKRGDIVCYNFNEEGHISLQCTQPKKVR 205
DC + CYN GHI+ C +PK+ R
Sbjct: 66 DCDLQEDACYNCGRGGHIAKDCKEPKRER 94
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 133 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171
>gb|AAB88490.1| cellular nucleic acid binding protein [Gallus gallus]
Length = 172
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 80 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 134
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 135 CGETGHVAINCSKTSEV 151
Score = 57.8 bits (138), Expect = 2e-06
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 5/75 (6%)
Query: 138 DAPTDIVCFKCGEKGHKSNVCDRDEKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEG 192
D D C+ CG GH + C +++ C+ CGK GH DC D CY+ E G
Sbjct: 62 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 121
Query: 193 HISLQCTQPKKVRTG 207
HI CT+ K R G
Sbjct: 122 HIQKDCTKVKCYRCG 136
Score = 57.8 bits (138), Expect = 2e-06
Identities = 22/60 (36%), Positives = 36/60 (59%), Gaps = 5/60 (8%)
Query: 144 VCFKCGEKGHKSNVCD-RDEKKCFRCGKKGHTLADCK----RGDIVCYNFNEEGHISLQC 198
+C++CGE GH + CD ++++ C+ CG+ GH DCK + CYN + GH++ C
Sbjct: 47 ICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDC 106
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 114 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 167
Score = 52.4 bits (124), Expect = 8e-05
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 23/84 (27%)
Query: 145 CFKCGEKGHKSNVCDRDEKK----------------------CFRCGKKGHTLADCK-RG 181
CFKCG GH + C + C+RCG+ GH DC +
Sbjct: 6 CFKCGRTGHWARECPTGIGRGRGMRSRGRAGFQFMSSSLPDICYRCGESGHLAKDCDLQE 65
Query: 182 DIVCYNFNEEGHISLQCTQPKKVR 205
D CYN GHI+ C +PK+ R
Sbjct: 66 DEACYNCGRGGHIAKDCKEPKRER 89
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 128 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166
>dbj|BAC37269.1| unnamed protein product [Mus musculus]
Length = 171
Score = 62.8 bits (151), Expect = 6e-08
Identities = 28/77 (36%), Positives = 44/77 (56%), Gaps = 6/77 (7%)
Query: 129 KDERRPKMRDAPTDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYN 187
KD + PK + C+ CG+ GH + CD DE+KC+ CG+ GH DC + + CY
Sbjct: 79 KDCKEPKRE---REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK--VKCYR 133
Query: 188 FNEEGHISLQCTQPKKV 204
E GH+++ C++ +V
Sbjct: 134 CGETGHVAINCSKTSEV 150
Score = 58.5 bits (140), Expect = 1e-06
Identities = 37/111 (33%), Positives = 50/111 (44%), Gaps = 9/111 (8%)
Query: 106 RGKGQLSRPKPY----SAPPDKGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRD 161
RG+G SR + + S+ PD + K D D C+ CG GH + C
Sbjct: 25 RGRGMRSRGRGFQFVSSSLPDICYRCGEPGHLAKDCDLQEDEACYNCGRGGHIAKDCKEP 84
Query: 162 EKK----CFRCGKKGHTLADCKRGDIV-CYNFNEEGHISLQCTQPKKVRTG 207
+++ C+ CGK GH DC D CY+ E GHI CT+ K R G
Sbjct: 85 KREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVKCYRCG 135
Score = 56.6 bits (135), Expect = 4e-06
Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
C+ CGE GH C + KC+RCG+ GH +C K ++ CY E GH++ +CT
Sbjct: 113 CYSCGEFGHIQKDCTK--VKCYRCGETGHVAINCSKTSEVNCYRCGESGHLARECT 166
Score = 53.1 bits (126), Expect = 5e-05
Identities = 27/83 (32%), Positives = 35/83 (41%), Gaps = 22/83 (26%)
Query: 145 CFKCGEKGHKSNVCDRDEKK---------------------CFRCGKKGHTLADCK-RGD 182
CFKCG GH + C + C+RCG+ GH DC + D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGEPGHLAKDCDLQED 65
Query: 183 IVCYNFNEEGHISLQCTQPKKVR 205
CYN GHI+ C +PK+ R
Sbjct: 66 EACYNCGRGGHIAKDCKEPKRER 88
Score = 43.9 bits (102), Expect = 0.029
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 141 TDIVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
T + C++CGE GH + C + E C+RCG+ GH +C
Sbjct: 127 TKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 165
>emb|CAG11355.1| unnamed protein product [Tetraodon nigroviridis]
Length = 167
Score = 62.4 bits (150), Expect = 8e-08
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 132 RRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCK----RGDIVCYN 187
R P+ R ++ C++CG++GH CD+ E C+ C K GH DCK + CYN
Sbjct: 31 RGPRGRGRGKELFCYRCGDQGHMVKDCDQTEDSCYNCHKSGHISRDCKEPKREREQQCYN 90
Query: 188 FNEEGHISLQC 198
+ GH++ +C
Sbjct: 91 CGKAGHMAREC 101
Score = 57.8 bits (138), Expect = 2e-06
Identities = 27/76 (35%), Positives = 36/76 (46%), Gaps = 15/76 (19%)
Query: 145 CFKCGEKGHKSNVCDRD---------------EKKCFRCGKKGHTLADCKRGDIVCYNFN 189
CF CG GH C E C+RCG +GH + DC + + CYN +
Sbjct: 9 CFGCGRPGHWVKNCPTSSGLRGRGPRGRGRGKELFCYRCGDQGHMVKDCDQTEDSCYNCH 68
Query: 190 EEGHISLQCTQPKKVR 205
+ GHIS C +PK+ R
Sbjct: 69 KSGHISRDCKEPKRER 84
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/56 (42%), Positives = 31/56 (54%), Gaps = 3/56 (5%)
Query: 145 CFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADC-KRGDIVCYNFNEEGHISLQCT 199
CF CG GH +CD+ KC+RCG GH C K + CYN + GH++ CT
Sbjct: 109 CFTCGTLGHIQKLCDK--VKCYRCGGIGHVALQCSKASETTCYNCGKAGHVAKDCT 162
Score = 55.1 bits (131), Expect = 1e-05
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 145 CFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADCKRGDIVCYNFNEEGHISLQCTQ 200
C+ CG+ GH + CD +E+KCF CG GH C + + CY GH++LQC++
Sbjct: 88 CYNCGKAGHMARECDHANEQKCFTCGTLGHIQKLCDK--VKCYRCGGIGHVALQCSK 142
Score = 40.4 bits (93), Expect = 0.32
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 143 IVCFKCGEKGHKSNVCDR-DEKKCFRCGKKGHTLADC 178
+ C++CG GH + C + E C+ CGK GH DC
Sbjct: 125 VKCYRCGGIGHVALQCSKASETTCYNCGKAGHVAKDC 161
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 61.6 bits (148), Expect = 1e-07
Identities = 56/218 (25%), Positives = 90/218 (40%), Gaps = 22/218 (10%)
Query: 3 EFLNRYFPEDVRGKKEIEFLELKQGDMSVTEYAAKFVELAKFYPHYTAETAEFSKCIKIE 62
EF +YFP + + E +L+L QG+ +V EY +F L ++ E E ++ +
Sbjct: 248 EFNKKYFPPEAWDRLECAYLDLVQGNRTVREYDEEFNRLRRYVGRELEE--EQAQLRRFI 305
Query: 63 NGLRADIKRAIGYQKIRNFSELVSSCRIYEEDTKAHYKVMSERRGKGQLSRPKPYSAPPD 122
GLR +I+ + + SELV + EE + + E+ R + P D
Sbjct: 306 RGLRIEIRNHCLVRTFNSVSELVERAAMIEEGIEEERYLNREKAP----IRNNQSTKPAD 361
Query: 123 KGK*RLKDERRPKMRDAPTDIVCFKCGEKGHKSNVCDRDEKKCFRCGKKGHTLADCKRGD 182
K R D+ DA T C CG K H S C + C RCG K H + C + +
Sbjct: 362 KK--RKFDKVDNTKSDAKTG-ECVTCG-KNH-SGTCWKAIGACGRCGSKDHAIQSCPKME 416
Query: 183 -----------IVCYNFNEEGHISLQCTQPKKVRTGGK 209
C+ + GH+ +C + + G+
Sbjct: 417 PGQSKVLGEETRTCFYCGKTGHLKRECPKLTAEKQAGQ 454
Score = 41.2 bits (95), Expect = 0.19
Identities = 16/27 (59%), Positives = 24/27 (88%)
Query: 557 LDKFVVVFIDDILIYSETEEEHAEHLK 583
LD+FV++FI+DIL+YS++ E H EHL+
Sbjct: 804 LDEFVIIFINDILVYSKSWEAHQEHLR 830
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.369 0.167 0.628
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,375,300,795
Number of Sequences: 2540612
Number of extensions: 47168618
Number of successful extensions: 262927
Number of sequences better than 10.0: 4409
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 3480
Number of HSP's that attempted gapping in prelim test: 241764
Number of HSP's gapped (non-prelim): 15457
length of query: 1069
length of database: 863,360,394
effective HSP length: 139
effective length of query: 930
effective length of database: 510,215,326
effective search space: 474500253180
effective search space used: 474500253180
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 81 (35.8 bits)
Medicago: description of AC141111.4