BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141111.3 + phase: 0 /pseudo
(64 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB79800.1| puative protein [Arabidopsis thaliana] gi|298078... 87 1e-16
ref|NP_567856.1| pentatricopeptide (PPR) repeat-containing prote... 87 1e-16
dbj|BAD33652.1| putative fertility restorer [Oryza sativa (japon... 69 3e-11
ref|XP_469860.1| unknown protein [Oryza sativa (japonica cultiva... 48 8e-05
gb|AAP04079.1| unknown protein [Arabidopsis thaliana] gi|9759377... 48 8e-05
ref|NP_177860.1| pentatricopeptide (PPR) repeat-containing prote... 47 2e-04
ref|XP_463823.1| putative pentatricopeptide (PPR) repeat-contain... 47 2e-04
gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana] gi|15... 45 4e-04
ref|XP_464276.1| putative pentatricopeptide (PPR) repeat-contain... 45 5e-04
dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana] g... 45 5e-04
emb|CAE76009.1| B1358B12.18 [Oryza sativa (japonica cultivar-gro... 44 0.001
ref|XP_449993.1| PPR protein-like protein [Oryza sativa (japonic... 44 0.001
gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana] gi|25... 44 0.001
emb|CAB75920.1| putative protein [Arabidopsis thaliana] gi|15232... 43 0.002
gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana] gi|25... 43 0.002
ref|NP_178323.2| pentatricopeptide (PPR) repeat-containing prote... 43 0.002
gb|AAN41351.1| unknown protein [Arabidopsis thaliana] gi|7529747... 43 0.002
ref|NP_171855.1| pentatricopeptide (PPR) repeat-containing prote... 43 0.002
ref|NP_191463.2| pentatricopeptide (PPR) repeat-containing prote... 43 0.002
ref|NP_974457.1| pentatricopeptide (PPR) repeat-containing prote... 43 0.002
>emb|CAB79800.1| puative protein [Arabidopsis thaliana] gi|2980784|emb|CAA18211.1|
puative protein [Arabidopsis thaliana]
gi|25407684|pir||G85360 puative protein [imported] -
Arabidopsis thaliana
Length = 1075
Score = 87.0 bits (214), Expect = 1e-16
Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGG-RIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
I+ YNT+ITGYGK M+ A+G+F L +EPDETSYRSMIEGWGRA NYE+A+ YY+
Sbjct: 520 IIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQ 579
Query: 62 ELK 64
ELK
Sbjct: 580 ELK 582
Score = 30.8 bits (68), Expect = 9.8
Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 2/55 (3%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNY-EKARW 58
YNT+I YG ++ A G+ + GR I PD+ +Y +++ R + E +W
Sbjct: 1012 YNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAIKW 1066
>ref|NP_567856.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 904
Score = 87.0 bits (214), Expect = 1e-16
Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGG-RIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
I+ YNT+ITGYGK M+ A+G+F L +EPDETSYRSMIEGWGRA NYE+A+ YY+
Sbjct: 349 IIAYNTLITGYGKIFKMEAAQGLFHRLCNIGLEPDETSYRSMIEGWGRADNYEEAKHYYQ 408
Query: 62 ELK 64
ELK
Sbjct: 409 ELK 411
Score = 30.8 bits (68), Expect = 9.8
Identities = 17/55 (30%), Positives = 29/55 (51%), Gaps = 2/55 (3%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNY-EKARW 58
YNT+I YG ++ A G+ + GR I PD+ +Y +++ R + E +W
Sbjct: 841 YNTLIKAYGIGGMVEEAVGLVKEMRGRNIIPDKVTYTNLVTALRRNDEFLEAIKW 895
>dbj|BAD33652.1| putative fertility restorer [Oryza sativa (japonica
cultivar-group)] gi|50725891|dbj|BAD33419.1| putative
fertility restorer [Oryza sativa (japonica
cultivar-group)]
Length = 962
Score = 68.9 bits (167), Expect = 3e-11
Identities = 35/63 (55%), Positives = 45/63 (70%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V YNT+ITGYGK S+M A VF L + PDET+YRSMIEG+GRA Y++A YY
Sbjct: 402 VVAYNTVITGYGKVSDMQKAMEVFDRLKSAGLAPDETTYRSMIEGFGRADKYKQAILYYR 461
Query: 62 ELK 64
+L+
Sbjct: 462 KLR 464
Score = 35.8 bits (81), Expect = 0.30
Identities = 22/60 (36%), Positives = 32/60 (52%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGRI-EPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
YN MI YG+ ++G V L R EPD SY ++I+ +G AG E A +E++
Sbjct: 859 YNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMR 918
>ref|XP_469860.1| unknown protein [Oryza sativa (japonica cultivar-group)]
gi|14488357|gb|AAK63924.1| unknown protein [Oryza sativa
(japonica cultivar-group)]
Length = 484
Score = 47.8 bits (112), Expect = 8e-05
Identities = 20/61 (32%), Positives = 34/61 (54%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
+ +N+++ K+ N+ A+ +F + R PD +Y ++EGWGRA N K R Y E
Sbjct: 170 LAAFNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTYSILLEGWGRAPNLPKMREVYSE 229
Query: 63 L 63
+
Sbjct: 230 M 230
>gb|AAP04079.1| unknown protein [Arabidopsis thaliana] gi|9759377|dbj|BAB10028.1|
unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis
thaliana] gi|15239874|ref|NP_196771.1| pentatricopeptide
(PPR) repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 47.8 bits (112), Expect = 8e-05
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V YNT+I G + AE + L + + ++PD +Y S+I G+G AGN ++ YE
Sbjct: 564 LVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYE 623
Query: 62 ELK 64
E+K
Sbjct: 624 EMK 626
Score = 40.4 bits (93), Expect = 0.012
Identities = 22/63 (34%), Positives = 36/63 (56%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF-LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ +YN +I G K M+ AE +F L R+ P +Y ++I+G+ +AGN EK+ E
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE 273
Query: 62 ELK 64
+K
Sbjct: 274 RMK 276
Score = 35.4 bits (80), Expect = 0.40
Identities = 20/63 (31%), Positives = 35/63 (54%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
++ YNT+I GY KA N + + V + IEP ++ ++++G +AG E A +
Sbjct: 249 LITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLK 308
Query: 62 ELK 64
E+K
Sbjct: 309 EMK 311
Score = 32.0 bits (71), Expect = 4.4
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
V+YNTMI GY + ++ GA + + ++PD +Y +I + G E A +
Sbjct: 390 VIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNK 449
Query: 63 LK 64
+K
Sbjct: 450 MK 451
>ref|NP_177860.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana] gi|25406495|pir||F96802 hypothetical protein
F2P24.7 [imported] - Arabidopsis thaliana
gi|11079489|gb|AAG29201.1| hypothetical protein
[Arabidopsis thaliana]
Length = 481
Score = 46.6 bits (109), Expect = 2e-04
Identities = 20/61 (32%), Positives = 35/61 (56%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
+V +N +++ K+ N+ A+ VF + R PD +Y ++EGWG+ N KAR + E
Sbjct: 167 LVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFRE 226
Query: 63 L 63
+
Sbjct: 227 M 227
>ref|XP_463823.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa (japonica cultivar-group)]
gi|41052925|dbj|BAD07836.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 747
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEEL 63
YNT+I G+G M+ A VF + + PD T+Y +++ W RAG+ E AR ++E+
Sbjct: 245 YNTLIWGFGLCKKMEAALRVFGDMKDHGVTPDVTTYNTLLNAWVRAGDLESARKVFDEM 303
Score = 36.2 bits (82), Expect = 0.23
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ YNT++ + +A +++ A VF + G + SY MI+G+ AG E+A +
Sbjct: 277 VTTYNTLLNAWVRAGDLESARKVFDEMPGAGFAQNSVSYNVMIKGYVEAGKVEEAVGLFS 336
Query: 62 EL 63
E+
Sbjct: 337 EM 338
>gb|AAC02749.1| hypothetical protein [Arabidopsis thaliana]
gi|15224571|ref|NP_180636.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
gi|25370680|pir||F84712 hypothetical protein At2g30780
[imported] - Arabidopsis thaliana
Length = 452
Score = 45.4 bits (106), Expect = 4e-04
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
V YN +I GY A N D E F + G +EPD +Y+ M+ G+ +GN + YE
Sbjct: 210 VTYNFLIAGYMTAWNWDKMEATFQEMKRGPVEPDTDTYQLMLRGYANSGNLNRMEEMYEV 269
Query: 63 LK 64
+K
Sbjct: 270 IK 271
Score = 35.4 bits (80), Expect = 0.40
Identities = 17/63 (26%), Positives = 34/63 (52%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGG-RIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V YN +++ YG+ + E F L ++ P+ +Y +I G+ A N++K ++
Sbjct: 174 VVTYNILVSVYGRLLMVKNMEAAFEELQKVKLPPNSVTYNFLIAGYMTAWNWDKMEATFQ 233
Query: 62 ELK 64
E+K
Sbjct: 234 EMK 236
>ref|XP_464276.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa (japonica cultivar-group)]
gi|51963896|ref|XP_506731.1| PREDICTED OJ1116_A06.10
gene product [Oryza sativa (japonica cultivar-group)]
gi|49388067|dbj|BAD25179.1| putative pentatricopeptide
(PPR) repeat-containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 397
Score = 45.1 bits (105), Expect = 5e-04
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ YN ++ Y +A GA +F + EPD SY +++ +GRAG +E A +E
Sbjct: 152 VYAYNALMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFE 211
Query: 62 ELK 64
ELK
Sbjct: 212 ELK 214
>dbj|BAB10222.1| unnamed protein product [Arabidopsis thaliana]
gi|15242530|ref|NP_198814.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
Length = 678
Score = 45.1 bits (105), Expect = 5e-04
Identities = 22/63 (34%), Positives = 37/63 (57%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V YNTMI YGK + A + + R IEP+ +Y ++I WG+AG ++A ++
Sbjct: 400 VVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQ 459
Query: 62 ELK 64
+L+
Sbjct: 460 KLR 462
Score = 36.2 bits (82), Expect = 0.23
Identities = 21/62 (33%), Positives = 34/62 (53%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
+ Y+T+I+ +GKA +D A +F L +E D+ Y++MI + R G A+ E
Sbjct: 436 ITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHE 495
Query: 63 LK 64
LK
Sbjct: 496 LK 497
>emb|CAE76009.1| B1358B12.18 [Oryza sativa (japonica cultivar-group)]
gi|50924848|ref|XP_472769.1| B1358B12.18 [Oryza sativa
(japonica cultivar-group)]
Length = 609
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/62 (35%), Positives = 38/62 (60%), Gaps = 1/62 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V +NTMI+G +A ++DGAE + + + PD +Y ++I+G R G E AR +E
Sbjct: 275 VVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFE 334
Query: 62 EL 63
++
Sbjct: 335 KM 336
Score = 31.2 bits (69), Expect = 7.5
Identities = 18/62 (29%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVF-LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYYEE 62
V Y +I+G KA AE V + +EPD T+Y +I+ + R G+ + +E
Sbjct: 451 VTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKE 510
Query: 63 LK 64
++
Sbjct: 511 MQ 512
>ref|XP_449993.1| PPR protein-like protein [Oryza sativa (japonica cultivar-group)]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein
[Oryza sativa (japonica cultivar-group)]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein
[Oryza sativa (japonica cultivar-group)]
Length = 794
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
+V YNT+I G KA N+DGA +F L L G I PDE +Y ++I+G RA A +
Sbjct: 535 VVTYNTLINGLCKARNLDGAVRLFKELQLKG-ISPDEITYGTLIDGLLRAHRENDAMMLF 593
Query: 61 EEL 63
+ +
Sbjct: 594 QNI 596
>gb|AAC61823.1| hypothetical protein [Arabidopsis thaliana] gi|25408353|pir||A84765
hypothetical protein At2g35130 [imported] - Arabidopsis
thaliana gi|15226907|ref|NP_181058.1| pentatricopeptide
(PPR) repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ VYN ++ Y +A GA +F + EPD SY M++ +GRAG + A +E
Sbjct: 334 VYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVFE 393
Query: 62 ELK 64
E+K
Sbjct: 394 EMK 396
Score = 33.1 bits (74), Expect = 2.0
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 1/62 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
I YN +I YGKA ++ E +F+ L + PD ++ S I + R Y K +E
Sbjct: 474 ISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFE 533
Query: 62 EL 63
E+
Sbjct: 534 EM 535
Score = 32.0 bits (71), Expect = 4.4
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGG-RIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
YN MI YGKAS + ++ + + +P+ +Y +++ + R G EKA +E+L+
Sbjct: 267 YNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ 326
Score = 30.8 bits (68), Expect = 9.8
Identities = 17/63 (26%), Positives = 32/63 (49%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
++ +N +I YG+ AE +++ L R P E +Y +I+ + AG E+A
Sbjct: 155 VICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEVVLV 214
Query: 62 ELK 64
E++
Sbjct: 215 EMQ 217
>emb|CAB75920.1| putative protein [Arabidopsis thaliana]
gi|15232243|ref|NP_191564.1| pentatricopeptide (PPR)
repeat-containing protein [Arabidopsis thaliana]
gi|11358285|pir||T47829 hypothetical protein T2O9.30 -
Arabidopsis thaliana
Length = 473
Score = 43.1 bits (100), Expect = 0.002
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
+V Y MITGY + +D A+ +F +T+ G++ P+ +Y SMI G AG + +A W
Sbjct: 359 VVCYTVMITGYVVSGELDKAKEMFREMTVKGQL-PNVFTYNSMIRGLCMAGEFREACWLL 417
Query: 61 EELK 64
+E++
Sbjct: 418 KEME 421
Score = 30.8 bits (68), Expect = 9.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLT--LGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
++ Y T+I G +A N++ + FL + PD Y MI G+ +G +KA+ +
Sbjct: 324 VLHYTTLIDGLSRAGNLEACK-YFLDEMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMF 382
Query: 61 EEL 63
E+
Sbjct: 383 REM 385
>gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana] gi|25410964|pir||E84433
hypothetical protein At2g02150 [imported] - Arabidopsis
thaliana
Length = 1107
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/63 (33%), Positives = 36/63 (56%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ YN MI K +++ A G+F + R + PD +Y SMI+G+G+ G + ++E
Sbjct: 130 VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 189
Query: 62 ELK 64
E+K
Sbjct: 190 EMK 192
Score = 34.3 bits (77), Expect = 0.88
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTLGGRI-EPDETSYRSMIEGWGRAGNYEKARWYYEE 62
V YN+MI G+GK +D F + EPD +Y ++I + + G +Y E
Sbjct: 166 VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYRE 225
Query: 63 LK 64
+K
Sbjct: 226 MK 227
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
YN +I G+ KA NMD A + L GR I+PD Y + I G E A+ E+K
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 402
Score = 32.7 bits (73), Expect = 2.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V Y +I G A M AE +F + + P+ SY ++I G+ +A N ++A
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 364
Query: 62 ELK 64
ELK
Sbjct: 365 ELK 367
>ref|NP_178323.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 1141
Score = 43.1 bits (100), Expect = 0.002
Identities = 21/63 (33%), Positives = 36/63 (56%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+ YN MI K +++ A G+F + R + PD +Y SMI+G+G+ G + ++E
Sbjct: 130 VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 189
Query: 62 ELK 64
E+K
Sbjct: 190 EMK 192
Score = 34.3 bits (77), Expect = 0.88
Identities = 19/62 (30%), Positives = 30/62 (47%), Gaps = 1/62 (1%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTLGGRI-EPDETSYRSMIEGWGRAGNYEKARWYYEE 62
V YN+MI G+GK +D F + EPD +Y ++I + + G +Y E
Sbjct: 166 VTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYRE 225
Query: 63 LK 64
+K
Sbjct: 226 MK 227
Score = 33.9 bits (76), Expect = 1.2
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
YN +I G+ KA NMD A + L GR I+PD Y + I G E A+ E+K
Sbjct: 343 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 402
Score = 32.7 bits (73), Expect = 2.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYE 61
+V Y +I G A M AE +F + + P+ SY ++I G+ +A N ++A
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 364
Query: 62 ELK 64
ELK
Sbjct: 365 ELK 367
>gb|AAN41351.1| unknown protein [Arabidopsis thaliana] gi|7529747|emb|CAB86932.1|
putative protein [Arabidopsis thaliana]
gi|11357524|pir||T47786 hypothetical protein F17J16.90 -
Arabidopsis thaliana
Length = 526
Score = 42.7 bits (99), Expect = 0.002
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
Y TM++ Y AS+M+GAE F + EP+ +Y ++I+G+ +A + EK YE+++
Sbjct: 330 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 389
Score = 36.6 bits (83), Expect = 0.18
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 9 MITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
+IT YGK N +GAE V L P+ SY +++E +GR G A + ++
Sbjct: 88 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 144
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
IV Y T+I GY KA++++ V+ + L G I+ ++T ++++ GR N+ A +Y
Sbjct: 362 IVTYGTLIKGYAKANDVEKMMEVYEKMRLSG-IKANQTILTTIMDASGRCKNFGSALGWY 420
Query: 61 EELK 64
+E++
Sbjct: 421 KEME 424
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTL----GGRIEPDETSYRSMIEGWGRAGNYEKARWY 59
+ Y ++ + + AE VF TL ++PD+ Y MI + +AGNYEKAR
Sbjct: 153 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 212
Query: 60 YEEL 63
+ +
Sbjct: 213 FSSM 216
>ref|NP_171855.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana] gi|7485908|pir||T00902 hypothetical protein
F21B7.16 - Arabidopsis thaliana
gi|9280662|gb|AAF86531.1| F21B7.18 [Arabidopsis
thaliana]
Length = 660
Score = 42.7 bits (99), Expect = 0.002
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVFLTL-GGRIEPDETSYRSMIEGWGRAGNYEKA 56
+ YN ++ G A +D AE VF + GRI+PD +Y +MI+G+ +AG +KA
Sbjct: 222 LYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKA 276
>ref|NP_191463.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 583
Score = 42.7 bits (99), Expect = 0.002
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
Y TM++ Y AS+M+GAE F + EP+ +Y ++I+G+ +A + EK YE+++
Sbjct: 387 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 446
Score = 36.6 bits (83), Expect = 0.18
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 9 MITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
+IT YGK N +GAE V L P+ SY +++E +GR G A + ++
Sbjct: 145 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 201
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
IV Y T+I GY KA++++ V+ + L G I+ ++T ++++ GR N+ A +Y
Sbjct: 419 IVTYGTLIKGYAKANDVEKMMEVYEKMRLSG-IKANQTILTTIMDASGRCKNFGSALGWY 477
Query: 61 EELK 64
+E++
Sbjct: 478 KEME 481
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTL----GGRIEPDETSYRSMIEGWGRAGNYEKARWY 59
+ Y ++ + + AE VF TL ++PD+ Y MI + +AGNYEKAR
Sbjct: 210 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 269
Query: 60 YEEL 63
+ +
Sbjct: 270 FSSM 273
>ref|NP_974457.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 590
Score = 42.7 bits (99), Expect = 0.002
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 6 YNTMITGYGKASNMDGAEGVFLTLG-GRIEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
Y TM++ Y AS+M+GAE F + EP+ +Y ++I+G+ +A + EK YE+++
Sbjct: 394 YTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMR 453
Score = 36.6 bits (83), Expect = 0.18
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 9 MITGYGKASNMDGAEGVFLTLGGR-IEPDETSYRSMIEGWGRAGNYEKARWYYEELK 64
+IT YGK N +GAE V L P+ SY +++E +GR G A + ++
Sbjct: 152 LITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAEAIFRRMQ 208
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 3 IVVYNTMITGYGKASNMDGAEGVF--LTLGGRIEPDETSYRSMIEGWGRAGNYEKARWYY 60
IV Y T+I GY KA++++ V+ + L G I+ ++T ++++ GR N+ A +Y
Sbjct: 426 IVTYGTLIKGYAKANDVEKMMEVYEKMRLSG-IKANQTILTTIMDASGRCKNFGSALGWY 484
Query: 61 EELK 64
+E++
Sbjct: 485 KEME 488
Score = 36.2 bits (82), Expect = 0.23
Identities = 20/64 (31%), Positives = 32/64 (49%), Gaps = 4/64 (6%)
Query: 4 VVYNTMITGYGKASNMDGAEGVFLTL----GGRIEPDETSYRSMIEGWGRAGNYEKARWY 59
+ Y ++ + + AE VF TL ++PD+ Y MI + +AGNYEKAR
Sbjct: 217 ITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKV 276
Query: 60 YEEL 63
+ +
Sbjct: 277 FSSM 280
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115,220,486
Number of Sequences: 2540612
Number of extensions: 3554846
Number of successful extensions: 10641
Number of sequences better than 10.0: 457
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 388
Number of HSP's that attempted gapping in prelim test: 9245
Number of HSP's gapped (non-prelim): 1630
length of query: 64
length of database: 863,360,394
effective HSP length: 40
effective length of query: 24
effective length of database: 761,735,914
effective search space: 18281661936
effective search space used: 18281661936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)
Medicago: description of AC141111.3