BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC141111.1 - phase: 0 /pseudo
         (584 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|YP_241650.1| hypothetical protein XC_0549 [Xanthomonas campe...    38  0.79
emb|CAD77805.1| hypothetical protein-signal peptide and transmem...    35  6.7
emb|CAI75700.1| Tpr-related protein family member, putative [The...    35  8.7
ref|XP_640968.1| hypothetical protein DDB0215238 [Dictyostelium ...    35  8.7

>ref|YP_241650.1| hypothetical protein XC_0549 [Xanthomonas campestris pv. campestris
           str. 8004] gi|66572220|gb|AAY47630.1| conserved
           hypothetical protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 103

 Score = 38.1 bits (87), Expect = 0.79
 Identities = 29/83 (34%), Positives = 51/83 (60%)

Query: 317 LGLRQKMRIV*SEVLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQ 376
           + +R  M ++   +L +L++LL LLLL+L+L + LLL ++ LL +L  L+ +   L  L 
Sbjct: 1   MAMRTAMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 60

Query: 377 LRVR*LLLSYV*NVLCLCLVVIL 399
           L +  LLL  +  +L L L+++L
Sbjct: 61  LLLLLLLLLLLLLLLLLLLLLLL 83



 Score = 37.4 bits (85), Expect = 1.3
 Identities = 27/71 (38%), Positives = 46/71 (64%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*N 389
           +L +L++LL LLLL+L+L + LLL ++ LL +L  L+ +   L  L L +  LLL  +  
Sbjct: 33  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 92

Query: 390 VLCLCLVVILK 400
           +L L L+++L+
Sbjct: 93  LLLLLLLLLLR 103



 Score = 37.0 bits (84), Expect = 1.8
 Identities = 33/98 (33%), Positives = 58/98 (58%)

Query: 302 LSLRGRRLLVGFSL*LGLRQKMRIV*SEVLAILIILL*LLLLILVLRIALLLSIVFLLWV 361
           +++R   LL+   L L L   + ++   +L +L++LL LLLL+L+L + LLL ++ LL +
Sbjct: 1   MAMRTAMLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 60

Query: 362 LSCLI*MERWLSKLQLRVR*LLLSYV*NVLCLCLVVIL 399
           L  L+ +   L  L L +  LLL  +  +L L L+++L
Sbjct: 61  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 98



 Score = 36.6 bits (83), Expect = 2.3
 Identities = 27/70 (38%), Positives = 45/70 (63%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*N 389
           +L +L++LL LLLL+L+L + LLL ++ LL +L  L+ +   L  L L +  LLL  +  
Sbjct: 30  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 89

Query: 390 VLCLCLVVIL 399
           +L L L+++L
Sbjct: 90  LLLLLLLLLL 99



 Score = 36.6 bits (83), Expect = 2.3
 Identities = 27/70 (38%), Positives = 45/70 (63%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*N 389
           +L +L++LL LLLL+L+L + LLL ++ LL +L  L+ +   L  L L +  LLL  +  
Sbjct: 31  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 90

Query: 390 VLCLCLVVIL 399
           +L L L+++L
Sbjct: 91  LLLLLLLLLL 100



 Score = 36.6 bits (83), Expect = 2.3
 Identities = 27/70 (38%), Positives = 45/70 (63%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*N 389
           +L +L++LL LLLL+L+L + LLL ++ LL +L  L+ +   L  L L +  LLL  +  
Sbjct: 32  LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL 91

Query: 390 VLCLCLVVIL 399
           +L L L+++L
Sbjct: 92  LLLLLLLLLL 101


>emb|CAD77805.1| hypothetical protein-signal peptide and transmembrane prediction
           [Rhodopirellula baltica SH 1]
           gi|32477734|ref|NP_870728.1| hypothetical protein-signal
           peptide and transmembrane prediction [Rhodopirellula
           baltica SH 1]
          Length = 122

 Score = 35.0 bits (79), Expect = 6.7
 Identities = 17/45 (37%), Positives = 32/45 (70%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSK 374
           VL ++++L+ +L+L+LVL + L+L +V +L ++  L+   RW SK
Sbjct: 7   VLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVLVISVRWASK 51


>emb|CAI75700.1| Tpr-related protein family member, putative [Theileria annulata]
          Length = 185

 Score = 34.7 bits (78), Expect = 8.7
 Identities = 30/88 (34%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 330 VLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI*MERWLSKLQLRVR*LLLSYV*N 389
           VL +L +LL +LL++L+LRI +++  V L W+L   + +   L    +R   L L  +  
Sbjct: 24  VLRVLNLLLLVLLMLLILRILMVILSVMLRWILRRKLLLLNILLLRVVRRSVLKLLLLVP 83

Query: 390 VLCLCLVVILKWI*FV-YL*VVWM*FWV 416
           +L   L+VILK +  V YL  V + F++
Sbjct: 84  ILKKLLLVILKLLLMVIYLLKVLIPFYL 111


>ref|XP_640968.1| hypothetical protein DDB0215238 [Dictyostelium discoideum]
           gi|60468990|gb|EAL66989.1| hypothetical protein
           DDB0215238 [Dictyostelium discoideum]
          Length = 230

 Score = 34.7 bits (78), Expect = 8.7
 Identities = 18/38 (47%), Positives = 29/38 (75%)

Query: 329 EVLAILIILL*LLLLILVLRIALLLSIVFLLWVLSCLI 366
           E+L +L++LL LLLL+L+L + LLL ++FL  +L  L+
Sbjct: 170 ELLLLLLLLLLLLLLLLLLLLLLLLLLLFLFLLLLLLL 207


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.364    0.163    0.577 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 738,555,213
Number of Sequences: 2540612
Number of extensions: 24248756
Number of successful extensions: 123022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122849
Number of HSP's gapped (non-prelim): 45
length of query: 584
length of database: 863,360,394
effective HSP length: 134
effective length of query: 450
effective length of database: 522,918,386
effective search space: 235313273700
effective search space used: 235313273700
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.5 bits)
S2: 78 (34.7 bits)