BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141110.1 + phase: 0 /pseudo
(143 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA22288.1| polyprotein [Oryza australiensis] 159 1e-38
gb|AAP44605.1| putative polyprotein [Oryza sativa (japonica cult... 153 1e-36
gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-... 152 2e-36
ref|XP_471538.1| OSJNBa0071G03.10 [Oryza sativa (japonica cultiv... 151 3e-36
gb|AAR06328.1| putative polyprotein [Oryza sativa (japonica cult... 147 7e-35
emb|CAD40471.2| OSJNBa0067G20.17 [Oryza sativa (japonica cultiva... 140 5e-33
gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-... 140 6e-33
ref|NP_909566.1| putative polyprotein [Oryza sativa] gi|14018102... 139 1e-32
ref|XP_468949.1| putative polyprotein [Oryza sativa (japonica cu... 138 2e-32
ref|XP_475026.1| OSJNBb0093G06.7 [Oryza sativa (japonica cultiva... 129 1e-29
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa (japonica cultivar... 122 2e-27
ref|NP_918795.1| B1096D03.11 [Oryza sativa (japonica cultivar-gr... 117 8e-26
ref|XP_462979.1| putative polyprotein [Oryza sativa (japonica cu... 108 3e-23
ref|XP_471618.1| OSJNBa0029L02.4 [Oryza sativa (japonica cultiva... 100 1e-20
emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa (japonica cultivar... 100 1e-20
ref|XP_470908.1| putative polyprotein [Oryza sativa (japonica cu... 90 1e-17
gb|AAX96521.1| retrotransposon protein, putative, Ty1-copia sub-... 89 3e-17
gb|AAU90298.1| putative polyprotein [Solanum demissum] 87 1e-16
emb|CAD40526.2| OSJNBa0023J03.14 [Oryza sativa (japonica cultiva... 59 3e-08
gb|AAQ56391.1| putative polyprotein [Oryza sativa (japonica cult... 56 2e-07
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 159 bits (402), Expect = 1e-38
Identities = 77/137 (56%), Positives = 101/137 (73%)
Query: 6 STNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHA 65
ST LRS++EKEKL TNF+DW RN+RIVL E+K YVL+ P PE P A+A R
Sbjct: 8 STFNLRSILEKEKLNGTNFMDWYRNLRIVLKQERKEYVLEVPYPEELPNNATATARRGFE 67
Query: 66 KHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTK 125
KH ND++++SC+MLA+M+PELQKQ+E A I+ L+ ++E QAR ERF+ SK+LF+ +
Sbjct: 68 KHTNDALDISCLMLATMSPELQKQYESSDAHTTIQGLRGMFENQARDERFNTSKSLFACR 127
Query: 126 LSEGGPVGPHVLKMIGY 142
L EG PV PHV+KMIGY
Sbjct: 128 LVEGNPVSPHVIKMIGY 144
>gb|AAP44605.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|34896518|ref|NP_909603.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1161
Score = 153 bits (386), Expect = 1e-36
Identities = 77/144 (53%), Positives = 104/144 (71%), Gaps = 1/144 (0%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
MA A +N LRS++EKEKLT TNF+DW RN+RIVL E K +VL P P P A AA
Sbjct: 1 MAAPAPSNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTEPFPANLPNNAPAA 60
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSK 119
R H K ND +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR ERF+ SK
Sbjct: 61 QRREHEKRCNDYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSK 120
Query: 120 ALFSTKLSEGGPVGPHVLKMIGYS 143
+LF+ +L+EG V PHV+KMIGY+
Sbjct: 121 SLFACRLAEGNLVSPHVIKMIGYT 144
>gb|AAX92956.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
gi|56382058|gb|AAV85747.1| Integrase core domain,
putative [Oryza sativa (japonica cultivar-group)]
Length = 1184
Score = 152 bits (383), Expect = 2e-36
Identities = 72/134 (53%), Positives = 99/134 (73%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKEKLT TN +DW RN+RIVL E K +VL P P P A AA R H K N
Sbjct: 11 LRSILEKEKLTGTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHEKRCN 70
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
D +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR +RF+ SK+LF+ +L+EG
Sbjct: 71 DYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAKRFNTSKSLFACRLAEG 130
Query: 130 GPVGPHVLKMIGYS 143
PV PHV+KMIGY+
Sbjct: 131 NPVSPHVIKMIGYN 144
>ref|XP_471538.1| OSJNBa0071G03.10 [Oryza sativa (japonica cultivar-group)]
gi|38346606|emb|CAD39797.2| OSJNBa0071G03.10 [Oryza
sativa (japonica cultivar-group)]
Length = 948
Score = 151 bits (382), Expect = 3e-36
Identities = 75/144 (52%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
MA +A +N LRS++EKEKLT TNF+DW RN+RIVL E K ++L P P P A AA
Sbjct: 78 MAAHAPSNFNLRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFLLIQPFPADLPNNAPAA 137
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSK 119
R H + ND +++SC+MLA+M+PELQ Q+E + A +I L+ ++E+QAR ERF+ SK
Sbjct: 138 QRRKHERRCNDYLDISCLMLATMSPELQSQYEALDAHTIITGLRNMFEDQARAERFNTSK 197
Query: 120 ALFSTKLSEGGPVGPHVLKMIGYS 143
LF+ +L++G PV PHV+KMIGY+
Sbjct: 198 FLFAYRLAQGNPVSPHVIKMIGYT 221
>gb|AAR06328.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50901300|ref|XP_463083.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1063
Score = 147 bits (370), Expect = 7e-35
Identities = 69/134 (51%), Positives = 97/134 (71%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LR ++EKEKLT TN +DW RN+RIVL E K +VL P P P A AA R H +
Sbjct: 103 LRYILEKEKLTRTNIMDWYRNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHERRCK 162
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
+ +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+EG
Sbjct: 163 EYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEG 222
Query: 130 GPVGPHVLKMIGYS 143
PV PHV+KMIGY+
Sbjct: 223 NPVSPHVIKMIGYT 236
>emb|CAD40471.2| OSJNBa0067G20.17 [Oryza sativa (japonica cultivar-group)]
gi|50923217|ref|XP_471969.1| OSJNBa0067G20.17 [Oryza
sativa (japonica cultivar-group)]
Length = 276
Score = 140 bits (354), Expect = 5e-33
Identities = 68/142 (47%), Positives = 100/142 (69%)
Query: 2 ANNASTNILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALR 61
A +S+ LRS++EKEKL TNF+DW RN+RIVL E K +VL+ P P P A+AA R
Sbjct: 5 APTSSSFNLRSILEKEKLNGTNFVDWYRNLRIVLRQEHKEFVLEEPFPTDLPNNATAARR 64
Query: 62 NAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKAL 121
H K N+ +++SC+ML +++PE Q+Q++ + A +I L ++E QAR ERF+ SK+L
Sbjct: 65 REHEKRCNEYLDISCLMLVTISPEFQRQYQTLDAHTIITRLCNMFEYQARAERFNTSKSL 124
Query: 122 FSTKLSEGGPVGPHVLKMIGYS 143
F+ +L+EG V P+V+KMIGY+
Sbjct: 125 FACRLAEGNAVSPNVIKMIGYT 146
>gb|AAX96621.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 591
Score = 140 bits (353), Expect = 6e-33
Identities = 67/134 (50%), Positives = 96/134 (71%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKEKLT TNF+DW N+RIVL E K +VL P P A A R H + N
Sbjct: 33 LRSILEKEKLTGTNFMDWYHNLRIVLRQEHKEFVLTQPFLADLPNNAPATQRREHERRCN 92
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
+ +++SC+MLA+M+ +LQ+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+EG
Sbjct: 93 EYLDISCLMLATMSLKLQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEG 152
Query: 130 GPVGPHVLKMIGYS 143
PV PHV+KMIGY+
Sbjct: 153 NPVSPHVIKMIGYT 166
>ref|NP_909566.1| putative polyprotein [Oryza sativa] gi|14018102|gb|AAK52165.1|
putative polyprotein [Oryza sativa]
Length = 262
Score = 139 bits (351), Expect = 1e-32
Identities = 67/134 (50%), Positives = 95/134 (70%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKE+LT TNF+DW N+ IVL E K +VL P P P A A R+ H K N
Sbjct: 11 LRSILEKEELTGTNFMDWYCNLGIVLRQEHKEFVLTQPFPADLPNNAPVAQRSEHEKRCN 70
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
D +++SC+MLA+M+PE Q+Q+E + A +I L+ ++E+QAR ERF+ K+LF+ +L+EG
Sbjct: 71 DYLDISCLMLATMSPEFQRQYEALDAHTIITGLRNMFEDQARAERFNTLKSLFACRLAEG 130
Query: 130 GPVGPHVLKMIGYS 143
PV HV+KMIGY+
Sbjct: 131 NPVSLHVIKMIGYT 144
>ref|XP_468949.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|29244675|gb|AAO73268.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 478
Score = 138 bits (348), Expect = 2e-32
Identities = 67/134 (50%), Positives = 94/134 (70%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
L S++EKEKLT TNF+DW N+RIVL E K +VL P P P A AA H + N
Sbjct: 11 LWSILEKEKLTGTNFLDWYHNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQCREHERRCN 70
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
+ +++SC+MLA+M+PELQ+Q+E + +I L+ ++E+QAR ERF+ SK LF+ +L+EG
Sbjct: 71 EYLDISCLMLATMSPELQRQYEALNDHTIITGLRNMFEDQARAERFNTSKFLFACRLAEG 130
Query: 130 GPVGPHVLKMIGYS 143
PV HV+KMIGY+
Sbjct: 131 NPVSLHVIKMIGYT 144
>ref|XP_475026.1| OSJNBb0093G06.7 [Oryza sativa (japonica cultivar-group)]
gi|38347566|emb|CAE04999.2| OSJNBb0093G06.7 [Oryza
sativa (japonica cultivar-group)]
Length = 923
Score = 129 bits (325), Expect = 1e-29
Identities = 64/125 (51%), Positives = 88/125 (70%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKEKLT TNF+DW N+RIVL E K +VL P P P A AA R H K N
Sbjct: 11 LRSILEKEKLTGTNFMDWYGNLRIVLRQEHKEFVLTQPFPADLPNNAPAAQRREHKKQCN 70
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
D +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+E
Sbjct: 71 DYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEV 130
Query: 130 GPVGP 134
P P
Sbjct: 131 NPSLP 135
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa (japonica cultivar-group)]
gi|50930153|ref|XP_474604.1| OSJNBb0089K06.4 [Oryza
sativa (japonica cultivar-group)]
Length = 873
Score = 122 bits (306), Expect = 2e-27
Identities = 59/120 (49%), Positives = 86/120 (71%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKEKLT TNF+DW RN+RIVL E K +VL P P P A AA H + N
Sbjct: 11 LRSILEKEKLTGTNFMDWYRNLRIVLRQEHKEFVLTQPFPVDLPNNAIAAQCREHERRCN 70
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSEG 129
+ ++SC+MLA+M+P++Q+Q+E + A +I L+ ++E+QAR ERF+ SK+LF+ +L+EG
Sbjct: 71 EYHDISCLMLATMSPKIQRQYEALDAHTIITGLRNMFEDQARAERFNTSKSLFACRLAEG 130
>ref|NP_918795.1| B1096D03.11 [Oryza sativa (japonica cultivar-group)]
Length = 392
Score = 117 bits (292), Expect = 8e-26
Identities = 56/108 (51%), Positives = 77/108 (70%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLN 69
LRS++EKEKLT TNF+DW RN+RIVL E K +VL P P P A AA R H K N
Sbjct: 111 LRSILEKEKLTGTNFMDWHRNLRIVLWQEHKEFVLTQPFPAGLPNNAHAAERREHEKRCN 170
Query: 70 DSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDV 117
D +++SC+MLA+M+PELQ+Q+E + A +I L+ ++E+QAR E F++
Sbjct: 171 DYLDISCLMLATMSPELQRQYEALDAHTIITGLRNMFEDQARAESFEL 218
>ref|XP_462979.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|41393222|gb|AAS01945.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1084
Score = 108 bits (270), Expect = 3e-23
Identities = 60/144 (41%), Positives = 85/144 (58%), Gaps = 36/144 (25%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
MA A++N LRS+IEKEKLT TNF+DW
Sbjct: 15 MAAPAASNFNLRSIIEKEKLTGTNFMDWE------------------------------- 43
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFDVSK 119
H K ND +++SC+MLA+M+P+LQ+Q+E + A +I L+ + E+QAR ER + SK
Sbjct: 44 ----HEKRCNDYLDISCLMLATMSPKLQRQYEALDAHTIITGLRNMSEDQARAERSNTSK 99
Query: 120 ALFSTKLSEGGPVGPHVLKMIGYS 143
+LF+ +L+EG PV PHV+KMIGY+
Sbjct: 100 SLFACRLAEGNPVSPHVIKMIGYT 123
>ref|XP_471618.1| OSJNBa0029L02.4 [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 99.8 bits (247), Expect = 1e-20
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
MA A +N LRS++EKEKL TNF+DW RN+RIVL E+K +VL P P P A AA
Sbjct: 41 MAAPAPSNFNLRSILEKEKLIGTNFMDWYRNLRIVLRQEQKEFVLTEPFPANLPNNAPAA 100
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHL 102
R H K ND +++SC++LA+M+PELQ+Q+E + A +I L
Sbjct: 101 QRREHEKRCNDYLDISCLILATMSPELQRQYEALDAHTIITGL 143
>emb|CAE04463.2| OSJNBa0029L02.4 [Oryza sativa (japonica cultivar-group)]
Length = 746
Score = 99.8 bits (247), Expect = 1e-20
Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 1/103 (0%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
MA A +N LRS++EKEKL TNF+DW RN+RIVL E+K +VL P P P A AA
Sbjct: 41 MAAPAPSNFNLRSILEKEKLIGTNFMDWYRNLRIVLRQEQKEFVLTEPFPANLPNNAPAA 100
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHL 102
R H K ND +++SC++LA+M+PELQ+Q+E + A +I L
Sbjct: 101 QRREHEKRCNDYLDISCLILATMSPELQRQYEALDAHTIITGL 143
>ref|XP_470908.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|29788818|gb|AAP03364.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 657
Score = 89.7 bits (221), Expect = 1e-17
Identities = 49/117 (41%), Positives = 74/117 (62%), Gaps = 1/117 (0%)
Query: 1 MANNASTNI-LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAA 59
M +A++N L +++KE L TNF+D RN+RIVL E K +VL P P P A AA
Sbjct: 1 MVASATSNFNLWFILKKENLNGTNFMDCYRNLRIVLRQEHKEFVLAQPFPADLPNNAPAA 60
Query: 60 LRNAHAKHLNDSVEVSCIMLASMTPELQKQHEGMTAFDMIEHLKTLYEEQARHERFD 116
R H K N +++S +MLA+M+PELQ+Q+E + + +I L+ ++E+QAR E +
Sbjct: 61 QRMEHEKRCNVYLDISYLMLATMSPELQRQYEALDSHTIITGLRNMFEDQARTESLE 117
>gb|AAX96521.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 259
Score = 88.6 bits (218), Expect = 3e-17
Identities = 43/99 (43%), Positives = 66/99 (66%)
Query: 30 NMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHLNDSVEVSCIMLASMTPELQKQ 89
N+RIVL E K ++L P P P A A R H + N+ +++SC+MLA+M+PELQ+Q
Sbjct: 59 NLRIVLRQEHKEFMLTQPFPADLPNNAPVAQRREHERRCNEYLDISCLMLATMSPELQRQ 118
Query: 90 HEGMTAFDMIEHLKTLYEEQARHERFDVSKALFSTKLSE 128
+E + A +I L+ ++E+QAR E F+ SK+LF+ +L E
Sbjct: 119 YEALDAHMIITGLRNMFEDQARAEWFNTSKSLFACRLVE 157
>gb|AAU90298.1| putative polyprotein [Solanum demissum]
Length = 703
Score = 86.7 bits (213), Expect = 1e-16
Identities = 48/135 (35%), Positives = 79/135 (57%), Gaps = 1/135 (0%)
Query: 8 NILRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKH 67
N + +++++ KL +N++DW R + IVLT E+ +VL P P +S + A+ K
Sbjct: 5 NPISTILDQNKLEGSNYVDWRRILDIVLTAEEYKFVLHEECPLKPNEQSSDEDKLAYQKW 64
Query: 68 LNDSVEVSCIMLASMTPELQKQHEGM-TAFDMIEHLKTLYEEQARHERFDVSKALFSTKL 126
C ++ASM+ LQ QH+ M +AF+ +E+LK ++ +Q + + + L +TK+
Sbjct: 65 RKADEMARCYIMASMSNVLQHQHQAMLSAFEFLENLKQMFGDQGQSAKQIAMRTLMNTKM 124
Query: 127 SEGGPVGPHVLKMIG 141
EG PV HVLKMIG
Sbjct: 125 VEGTPVRDHVLKMIG 139
>emb|CAD40526.2| OSJNBa0023J03.14 [Oryza sativa (japonica cultivar-group)]
gi|32483273|emb|CAE02400.1| OSJNBa0024J22.4 [Oryza
sativa (japonica cultivar-group)]
gi|50922753|ref|XP_471737.1| OSJNBa0023J03.14 [Oryza
sativa (japonica cultivar-group)]
Length = 704
Score = 58.5 bits (140), Expect = 3e-08
Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 10 LRSLIEKEKLTETNFIDWSRNMRIVLTHEKKLYVLDGPIPEAPPAGASAALRNAHAKHL- 68
LRS++EKEKL TNF+DW N+RIVL E K +VL P P P A A H K
Sbjct: 11 LRSILEKEKLIVTNFMDWYHNLRIVLRQEHKEFVLTEPFPADLPNNALVAQHREHEKLAE 70
Query: 69 NDSVEVSCIMLASMTPELQK 88
+ V + I + T L K
Sbjct: 71 GNPVSLHVIKMIGYTESLDK 90
>gb|AAQ56391.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 390
Score = 55.8 bits (133), Expect = 2e-07
Identities = 23/39 (58%), Positives = 33/39 (83%)
Query: 105 LYEEQARHERFDVSKALFSTKLSEGGPVGPHVLKMIGYS 143
++E+QAR ERF+ SK+LF+ +L+EG PV PH +KMIGY+
Sbjct: 1 MFEDQARAERFNTSKSLFACRLAEGNPVSPHEIKMIGYT 39
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,645,192
Number of Sequences: 2540612
Number of extensions: 8694477
Number of successful extensions: 27767
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 27708
Number of HSP's gapped (non-prelim): 102
length of query: 143
length of database: 863,360,394
effective HSP length: 119
effective length of query: 24
effective length of database: 561,027,566
effective search space: 13464661584
effective search space used: 13464661584
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)
Medicago: description of AC141110.1