BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140916.1 - phase: 0
(108 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC78541.1| putative two-component response regulator 3 prote... 72 3e-12
gb|AAD39333.1| response regulator 3 [Arabidopsis thaliana] gi|15... 68 6e-11
dbj|BAB20579.1| response regulator 4 [Zea mays] 68 6e-11
emb|CAB72174.1| responce reactor 4 [Arabidopsis thaliana] gi|221... 67 1e-10
gb|AAK14395.1| response regulator protein [Dianthus caryophyllus] 67 1e-10
dbj|BAB10861.1| response regulator 6 [Arabidopsis thaliana] gi|2... 66 2e-10
dbj|BAA34730.1| response regulator 6 [Arabidopsis thaliana] gi|1... 66 2e-10
gb|AAD39568.1| T10O24.8 [Arabidopsis thaliana] gi|15218550|ref|N... 66 2e-10
gb|AAF79300.1| F14D16.20 [Arabidopsis thaliana] gi|15221927|ref|... 65 4e-10
emb|CAB41129.1| responce reactor2 [Arabidopsis thaliana] gi|2138... 64 7e-10
gb|AAC26635.1| two-component response regulator homolog [Arabido... 64 7e-10
pir||T50856 response regulator 5 [imported] - Arabidopsis thalia... 64 7e-10
ref|NP_177627.1| two-component responsive regulator / response r... 64 9e-10
ref|NP_914660.1| putative response regulator [Oryza sativa (japo... 64 9e-10
emb|CAB88041.1| response regulator-like protein [Arabidopsis tha... 62 3e-09
sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 gi|... 62 3e-09
gb|AAQ10675.1| type-A response regulator [Catharanthus roseus] 62 4e-09
gb|AAQ10677.1| type-A response regulator [Catharanthus roseus] 61 8e-09
dbj|BAB20581.1| response regulator 6 [Zea mays] 61 8e-09
dbj|BAB20580.1| response regulator 5 [Zea mays] 60 1e-08
>gb|AAC78541.1| putative two-component response regulator 3 protein [Arabidopsis
thaliana] gi|18491269|gb|AAL69459.1|
At2g41310/F13H10.14 [Arabidopsis thaliana]
gi|51315814|sp|O80365|ARR8_ARATH Two-component response
regulator ARR8 (Response reactor 3)
gi|3273200|dbj|BAA31145.1| responce reactor3
[Arabidopsis thaliana] gi|15227325|ref|NP_181663.1|
two-component responsive regulator / response reactor 3
(RR3) [Arabidopsis thaliana]
Length = 225
Score = 72.0 bits (175), Expect = 3e-12
Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 4/75 (5%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+ DR ++ERLL+ SSC+VT VDSG KAL++LGL +D+ S
Sbjct: 6 ESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNAL----S 61
Query: 79 SSPSLPQPLQLQEVI 93
+SP + Q +++ +I
Sbjct: 62 TSPQIHQEVEINLII 76
>gb|AAD39333.1| response regulator 3 [Arabidopsis thaliana]
gi|15218957|ref|NP_176202.1| two-component responsive
regulator / response regulator 3 (ARR3) [Arabidopsis
thaliana] gi|51316126|sp|Q9ZWS9|ARR3_ARATH
Two-component response regulator ARR3
gi|3953595|dbj|BAA34725.1| response regulator 3
[Arabidopsis thaliana]
Length = 231
Score = 67.8 bits (164), Expect = 6e-11
Identities = 32/57 (56%), Positives = 46/57 (80%)
Query: 11 QLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
+L+ L + HVLAVDDS++DR+++ERLLR +SCKVT VDSG +AL++LGL+ D+
Sbjct: 22 ELESPPLDSDQVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGLDDDK 78
>dbj|BAB20579.1| response regulator 4 [Zea mays]
Length = 235
Score = 67.8 bits (164), Expect = 6e-11
Identities = 40/79 (50%), Positives = 53/79 (66%), Gaps = 2/79 (2%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL--NIDEISSTKSSIL 76
+ FHVLAVDDS+IDR L+E LL+ SS +VT V+SG+KAL+ LGL N E +S SS
Sbjct: 7 ESRFHVLAVDDSIIDRKLIEMLLKSSSYQVTTVESGNKALELLGLRDNGAEDASPPSSSS 66
Query: 77 ESSSPSLPQPLQLQEVIIL 95
SSS S P ++ +I+
Sbjct: 67 SSSSSSSPDHQEIDVSLII 85
>emb|CAB72174.1| responce reactor 4 [Arabidopsis thaliana]
gi|22137112|gb|AAM91401.1| At3g57040/F24I3_120
[Arabidopsis thaliana] gi|19699061|gb|AAL90898.1|
AT3g57040/F24I3_120 [Arabidopsis thaliana]
gi|51315815|sp|O80366|ARR9_ARATH Two-component response
regulator ARR9 (Response reactor 4)
gi|3273202|dbj|BAA31146.1| responce reactor4
[Arabidopsis thaliana] gi|15230202|ref|NP_191263.1|
two-component responsive regulator / response reactor 4
(RR4) [Arabidopsis thaliana]
Length = 234
Score = 66.6 bits (161), Expect = 1e-10
Identities = 36/75 (48%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+ DR L+ERLL+ SSC+VT VDSG KAL++LGL S+ ++ S
Sbjct: 6 ESQFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAF--S 63
Query: 79 SSPSLPQPLQLQEVI 93
+P Q +++ +I
Sbjct: 64 KAPVNHQVVEVNLII 78
>gb|AAK14395.1| response regulator protein [Dianthus caryophyllus]
Length = 264
Score = 66.6 bits (161), Expect = 1e-10
Identities = 33/61 (54%), Positives = 49/61 (80%), Gaps = 1/61 (1%)
Query: 10 LQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEIS 69
+ L P +++ E HVLAVDDS+IDR ++ERLL+ +SCKVT VDSG +AL++LGL+ ++ +
Sbjct: 24 IDLGPSDVRSEA-HVLAVDDSLIDRKVIERLLKTTSCKVTVVDSGMRALEFLGLDAEQRT 82
Query: 70 S 70
S
Sbjct: 83 S 83
>dbj|BAB10861.1| response regulator 6 [Arabidopsis thaliana]
gi|28466913|gb|AAO44065.1| At5g62920 [Arabidopsis
thaliana] gi|15242000|ref|NP_201097.1| two-component
responsive regulator / response regulator 6 (ARR6)
[Arabidopsis thaliana] gi|11358764|pir||T50857 response
regulator 6 [imported] - Arabidopsis thaliana
gi|51316124|sp|Q9ZWS6|ARR6_ARATH Two-component response
regulator ARR6 gi|3953601|dbj|BAA34728.1| response
regulator 6 [Arabidopsis thaliana]
Length = 186
Score = 66.2 bits (160), Expect = 2e-10
Identities = 35/65 (53%), Positives = 47/65 (71%), Gaps = 3/65 (4%)
Query: 8 RKLQLQPQNLK---QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
RK+++ + K + HVLAVDDS +DR +ERLLR SSCKVT VDS +AL+YLGL+
Sbjct: 8 RKMEILNHSSKFGSPDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLD 67
Query: 65 IDEIS 69
++E S
Sbjct: 68 VEEKS 72
>dbj|BAA34730.1| response regulator 6 [Arabidopsis thaliana]
gi|11358765|pir||T50860 response regulator 6 [imported]
- Arabidopsis thaliana
Length = 162
Score = 66.2 bits (160), Expect = 2e-10
Identities = 35/65 (53%), Positives = 47/65 (71%), Gaps = 3/65 (4%)
Query: 8 RKLQLQPQNLK---QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
RK+++ + K + HVLAVDDS +DR +ERLLR SSCKVT VDS +AL+YLGL+
Sbjct: 8 RKMEILNHSSKFGSPDPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLD 67
Query: 65 IDEIS 69
++E S
Sbjct: 68 VEEKS 72
>gb|AAD39568.1| T10O24.8 [Arabidopsis thaliana] gi|15218550|ref|NP_172517.1|
two-component responsive regulator / response regulator
4 (ARR4) [Arabidopsis thaliana]
gi|51315817|sp|O82798|ARR4_ARATH Two-component response
regulator ARR4 (Response regulator 1)
gi|3273196|dbj|BAA31143.1| responce regulator1
[Arabidopsis thaliana] gi|3323583|gb|AAC26636.1|
two-component response regulator homolog [Arabidopsis
thaliana] gi|3953597|dbj|BAA34726.1| response regulator
4 [Arabidopsis thaliana]
Length = 259
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/67 (50%), Positives = 50/67 (73%), Gaps = 7/67 (10%)
Query: 4 GLDSRKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGL 63
G++S L L + HVLAVDDS++DR+++ERLLR +SCKVT VDSG +AL++LGL
Sbjct: 23 GIESAPLDL-------DEVHVLAVDDSLVDRIVIERLLRITSCKVTAVDSGWRALEFLGL 75
Query: 64 NIDEISS 70
+ ++ S+
Sbjct: 76 DNEKASA 82
>gb|AAF79300.1| F14D16.20 [Arabidopsis thaliana] gi|15221927|ref|NP_173339.1|
two-component responsive regulator / response regulator
7 (ARR7) [Arabidopsis thaliana]
gi|51316125|sp|Q9ZWS7|ARR7_ARATH Two-component response
regulator ARR7 gi|3953603|dbj|BAA34729.1| response
regulator 7 [Arabidopsis thaliana]
Length = 206
Score = 65.1 bits (157), Expect = 4e-10
Identities = 30/42 (71%), Positives = 38/42 (90%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
HVLAVDDS++DR ++ERLLR SSCKVT V+SG +AL+YLGL+
Sbjct: 25 HVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLD 66
>emb|CAB41129.1| responce reactor2 [Arabidopsis thaliana]
gi|21389637|gb|AAM48017.1| response reactor 2 (ATRR2)
[Arabidopsis thaliana] gi|18252911|gb|AAL62382.1|
response reactor 2 (ATRR2) [Arabidopsis thaliana]
gi|3273198|dbj|BAA31144.1| responce reactor2
[Arabidopsis thaliana] gi|7487124|pir||T06673 response
reactor 2 [imported] - Arabidopsis thaliana
gi|15228338|ref|NP_190393.1| two-component responsive
regulator / response regulator 5 (ARR5) / response
reactor 2 (RR2) [Arabidopsis thaliana]
gi|51316111|sp|Q9SB04|ARR5_ARATH Two-component response
regulator ARR5 (Response reactor 2)
Length = 184
Score = 64.3 bits (155), Expect = 7e-10
Identities = 32/48 (66%), Positives = 39/48 (80%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISS 70
HVLAVDDS++DR +ERLLR SSCKVT VDS +AL+YLGL+ + SS
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSS 73
>gb|AAC26635.1| two-component response regulator homolog [Arabidopsis thaliana]
gi|11358906|pir||T50855 two-component response
regulator homolog [imported] - Arabidopsis thaliana
Length = 184
Score = 64.3 bits (155), Expect = 7e-10
Identities = 32/48 (66%), Positives = 39/48 (80%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISS 70
HVLAVDDS++DR +ERLLR SSCKVT VDS +AL+YLGL+ + SS
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSS 73
>pir||T50856 response regulator 5 [imported] - Arabidopsis thaliana
gi|3953599|dbj|BAA34727.1| response regulator 5
[Arabidopsis thaliana]
Length = 184
Score = 64.3 bits (155), Expect = 7e-10
Identities = 32/48 (66%), Positives = 39/48 (80%)
Query: 23 HVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISS 70
HVLAVDDS++DR +ERLLR SSCKVT VDS +AL+YLGL+ + SS
Sbjct: 26 HVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSS 73
>ref|NP_177627.1| two-component responsive regulator / response regulator 15
(ARR15) [Arabidopsis thaliana]
gi|5882734|gb|AAD55287.1| Similar to gb|AB008490
response regulator 7 (ARR7) from Arabidopsis thaliana.
EST gb|AA042183 comes from this gene
gi|12323888|gb|AAG51914.1| putative response regulator
(two component phosphotransfer signaling); 70657-71777
[Arabidopsis thaliana] gi|11870065|gb|AAG40611.1|
response regulator 15 [Arabidopsis thaliana]
gi|25406392|pir||E96778 hypothetical protein F9E10.26
[imported] - Arabidopsis thaliana
gi|51315904|sp|Q7G8V2|ARR15_ARATH Two-component
response regulator ARR15
Length = 206
Score = 63.9 bits (154), Expect = 9e-10
Identities = 33/63 (52%), Positives = 43/63 (67%)
Query: 8 RKLQLQPQNLKQEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
R L + HVLAVDDS +DR ++ERLL+ S+CKVT V+SG +AL+YLGL+ D
Sbjct: 4 RDLSSSLSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDN 63
Query: 68 ISS 70
SS
Sbjct: 64 GSS 66
>ref|NP_914660.1| putative response regulator [Oryza sativa (japonica
cultivar-group)] gi|15528802|dbj|BAB64697.1| putative
response regulator [Oryza sativa (japonica
cultivar-group)]
Length = 232
Score = 63.9 bits (154), Expect = 9e-10
Identities = 38/63 (60%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILES 78
+ FHVLAVDDS+IDR L+E LL++SS +VT VDSG KAL+ LGL DE SS S
Sbjct: 7 ESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLR-DE-GDDSSSSPSS 64
Query: 79 SSP 81
SSP
Sbjct: 65 SSP 67
>emb|CAB88041.1| response regulator-like protein [Arabidopsis thaliana]
Length = 122
Score = 62.0 bits (149), Expect = 3e-09
Identities = 28/59 (47%), Positives = 46/59 (77%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILE 77
+E HVLAVDD++IDR L+ER+L+ SSCKVT ++G +AL+YLGL + + + +++++
Sbjct: 17 EEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMK 75
>sp|Q9FPR6|ARR17_ARATH Two-component response regulator ARR17 gi|11870071|gb|AAG40613.1|
response regulator 17 [Arabidopsis thaliana]
gi|18410485|ref|NP_567037.1| two-component responsive
regulator / response regulator 17 (ARR17) [Arabidopsis
thaliana]
Length = 153
Score = 62.0 bits (149), Expect = 3e-09
Identities = 28/59 (47%), Positives = 46/59 (77%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSSILE 77
+E HVLAVDD++IDR L+ER+L+ SSCKVT ++G +AL+YLGL + + + +++++
Sbjct: 17 EEELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMK 75
>gb|AAQ10675.1| type-A response regulator [Catharanthus roseus]
Length = 254
Score = 61.6 bits (148), Expect = 4e-09
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 20 EHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
+ HVLAVDDS++DR ++ERLL+ S CKVT V+SG +AL+YLGL+
Sbjct: 12 KELHVLAVDDSLVDRKVIERLLKISCCKVTAVESGRRALQYLGLD 56
>gb|AAQ10677.1| type-A response regulator [Catharanthus roseus]
Length = 188
Score = 60.8 bits (146), Expect = 8e-09
Identities = 31/46 (67%), Positives = 40/46 (86%), Gaps = 1/46 (2%)
Query: 22 FHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDE 67
FHVLAVDDS++DR L+ERLL+ S+ +VT VDSG KAL++LGL +DE
Sbjct: 10 FHVLAVDDSLVDRKLIERLLKTSAYQVTVVDSGIKALEFLGL-LDE 54
>dbj|BAB20581.1| response regulator 6 [Zea mays]
Length = 235
Score = 60.8 bits (146), Expect = 8e-09
Identities = 30/43 (69%), Positives = 37/43 (85%)
Query: 22 FHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLN 64
FHVLAVDDS+ DR L+ERLL+ SS +VT VDSG KAL++LGL+
Sbjct: 42 FHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALQFLGLH 84
>dbj|BAB20580.1| response regulator 5 [Zea mays]
Length = 236
Score = 60.5 bits (145), Expect = 1e-08
Identities = 33/56 (58%), Positives = 41/56 (72%), Gaps = 1/56 (1%)
Query: 19 QEHFHVLAVDDSVIDRMLLERLLRDSSCKVTCVDSGDKALKYLGLNIDEISSTKSS 74
+ FHVLAVDDS++DR L+E LL+ SS +VT VDSG KAL+ LGL D S + SS
Sbjct: 7 ESRFHVLAVDDSLVDRKLIEMLLKTSSYQVTTVDSGSKALELLGLR-DASSPSPSS 61
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.139 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,307,292
Number of Sequences: 2540612
Number of extensions: 5436702
Number of successful extensions: 22898
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 22721
Number of HSP's gapped (non-prelim): 227
length of query: 108
length of database: 863,360,394
effective HSP length: 84
effective length of query: 24
effective length of database: 649,948,986
effective search space: 15598775664
effective search space used: 15598775664
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140916.1