BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140850.3 + phase: 0 /pseudo
(650 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 157 1e-36
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 156 2e-36
gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsi... 121 8e-26
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 121 8e-26
gb|AAT39963.1| putative polyprotein [Solanum demissum] 119 4e-25
emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|A... 117 9e-25
gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsi... 116 2e-24
gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-... 114 1e-23
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 114 1e-23
ref|NP_909714.1| putative gag-pol polyprotein [Oryza sativa (jap... 113 2e-23
pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidops... 113 2e-23
gb|AAX96721.1| retrotransposon protein, putative, unclassified [... 113 2e-23
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 113 2e-23
gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi... 112 3e-23
gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-... 112 4e-23
gb|AAV43949.1| putative polyprotein [Oryza sativa (japonica cult... 112 4e-23
gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cult... 112 4e-23
gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cult... 112 4e-23
gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-... 112 4e-23
gb|AAP46242.1| putative gag-pol precursor, 3'-partial [Oryza sat... 112 5e-23
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 157 bits (397), Expect = 1e-36
Identities = 73/86 (84%), Positives = 78/86 (89%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
FL YP WVANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VF
Sbjct: 1257 FLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVF 1316
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
SFMDGFSGYN IKM+PED EKT+FIT
Sbjct: 1317 SFMDGFSGYNQIKMAPEDMEKTTFIT 1342
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 156 bits (394), Expect = 2e-36
Identities = 72/86 (83%), Positives = 78/86 (89%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
FL YP W+ANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPHIDVLVDNTAQS VF
Sbjct: 1255 FLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPHIDVLVDNTAQSSVF 1314
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
SFMDGFSGYN IKM+PED EKT+FIT
Sbjct: 1315 SFMDGFSGYNQIKMAPEDMEKTTFIT 1340
>gb|AAD15474.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411562|pir||G84516 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1466
Score = 121 bits (303), Expect = 8e-26
Identities = 55/82 (67%), Positives = 69/82 (84%)
Query: 99 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 158
V+YP+W+AN V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA +++ SFMD
Sbjct: 496 VQYPDWLANTVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLSFMD 555
Query: 159 GFSGYNLIKMSPEDREKTSFIT 180
FSGYN I M+PED+EKT FIT
Sbjct: 556 AFSGYNQIMMNPEDQEKTLFIT 577
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 121 bits (303), Expect = 8e-26
Identities = 55/85 (64%), Positives = 70/85 (81%)
Query: 96 LMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFS 155
+ +YP W+ANIVPVPKKDGKVRMCVD+RDLNKASPKD+F LP+I +L+DN A+ ++ S
Sbjct: 1634 IRVAQYPSWLANIVPVPKKDGKVRMCVDYRDLNKASPKDDFLLPNIHILLDNCAKHEIAS 1693
Query: 156 FMDGFSGYNLIKMSPEDREKTSFIT 180
F+D ++GY+ I M ED EKTSFIT
Sbjct: 1694 FVDCYAGYHQIIMDDEDAEKTSFIT 1718
>gb|AAT39963.1| putative polyprotein [Solanum demissum]
Length = 1483
Score = 119 bits (297), Expect = 4e-25
Identities = 54/85 (63%), Positives = 68/85 (79%)
Query: 96 LMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFS 155
+ +YP W+ANIVPVPKKDGKVRMCVD RDLNKASPKD+FPLP+ +L+DN A+ ++ S
Sbjct: 588 IRVAQYPSWLANIVPVPKKDGKVRMCVDCRDLNKASPKDDFPLPNSHILLDNCAEHEIAS 647
Query: 156 FMDGFSGYNLIKMSPEDREKTSFIT 180
F+D ++GY+ I M ED EK SFIT
Sbjct: 648 FVDCYAGYHQIIMDDEDAEKMSFIT 672
>emb|CAB80803.1| AT4g03800 [Arabidopsis thaliana] gi|3695395|gb|AAC62796.1| contains
similarity to reverse transcriptase (Pfam: PF00078 rvt,
E=4.3e-08) [Arabidopsis thaliana] gi|7487690|pir||T01961
hypothetical protein T5H22.5 - Arabidopsis thaliana
Length = 637
Score = 117 bits (294), Expect = 9e-25
Identities = 54/82 (65%), Positives = 68/82 (82%)
Query: 99 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 158
V+YP+WVA V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV++TA +++ +FMD
Sbjct: 373 VQYPDWVAITVVVKKKNGKDRVCIDFTDLNKACPKDSFPLPHIDRLVESTAGNELLTFMD 432
Query: 159 GFSGYNLIKMSPEDREKTSFIT 180
F GYN I M+PED+EKTSFIT
Sbjct: 433 AFLGYNQIMMNPEDQEKTSFIT 454
>gb|AAD03367.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411604|pir||A84525 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1329
Score = 116 bits (291), Expect = 2e-24
Identities = 56/82 (68%), Positives = 66/82 (80%)
Query: 99 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 158
V+YPEW+AN V V KK+GK R+CVDF DLNKA KD FPLPHID LV++T ++ SFMD
Sbjct: 464 VKYPEWLANPVVVKKKNGKWRVCVDFTDLNKACSKDFFPLPHIDRLVESTTGHEMLSFMD 523
Query: 159 GFSGYNLIKMSPEDREKTSFIT 180
FSGYN I M+PED+EKTSFIT
Sbjct: 524 AFSGYNQILMNPEDQEKTSFIT 545
>gb|AAX96629.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1647
Score = 114 bits (285), Expect = 1e-23
Identities = 57/98 (58%), Positives = 70/98 (71%)
Query: 83 LRVRFKSRLMRVFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHID 142
+R L F+ V +PEW+AN V V K +GK RMCVDF DLNKASPKD+FPLP ID
Sbjct: 535 IREELDKLLKAGFIREVLHPEWLANPVMVRKANGKWRMCVDFTDLNKASPKDHFPLPRID 594
Query: 143 VLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSFIT 180
LVD+TA ++ SF+D +SGY+ I M+ ED EKTSFIT
Sbjct: 595 HLVDSTAGCELLSFLDAYSGYHQISMAKEDEEKTSFIT 632
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 114 bits (284), Expect = 1e-23
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V YP+W+AN+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ +
Sbjct: 49 FIREVSYPDWLANVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGML 108
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
SF+D FSGY+ I MSP+D EK +FIT
Sbjct: 109 SFLDAFSGYHQIPMSPDDEEKIAFIT 134
>ref|NP_909714.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|28269476|gb|AAO38019.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 761
Score = 113 bits (283), Expect = 2e-23
Identities = 51/87 (58%), Positives = 68/87 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V VPK +GK+RMC+D+ +LNKA PKD FPLP ID +VD+TA +
Sbjct: 503 FIREVIHPEWLANPVVVPKANGKLRMCIDYTNLNKACPKDPFPLPRIDQIVDSTAGCDLL 562
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFITH 181
SF+D +SGY+ I+M+ ED EKT+FITH
Sbjct: 563 SFLDAYSGYHQIRMAREDEEKTAFITH 589
>pir||E96549 hypothetical protein F11M15.5 [imported] - Arabidopsis thaliana
gi|4836930|gb|AAD30632.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 1295
Score = 113 bits (283), Expect = 2e-23
Identities = 54/82 (65%), Positives = 65/82 (78%)
Query: 99 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 158
V+YPEW+AN V V KK+GK R+CVDF DLNKA PKD FPLPHID V++T ++ SFMD
Sbjct: 650 VKYPEWLANPVVVKKKNGKWRVCVDFTDLNKACPKDCFPLPHIDRHVESTTGHEMLSFMD 709
Query: 159 GFSGYNLIKMSPEDREKTSFIT 180
FS YN I M+P+D+EKTSFIT
Sbjct: 710 AFSAYNQILMNPDDQEKTSFIT 731
>gb|AAX96721.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1902
Score = 113 bits (283), Expect = 2e-23
Identities = 50/86 (58%), Positives = 68/86 (78%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V VPK +GK+RMC+D+ DLNKA PKD++PLPHID +VD+TA +
Sbjct: 855 FIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDSYPLPHIDQIVDSTAGCDLL 914
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
F+D +SGY+ I+M+ ED EKT+FIT
Sbjct: 915 CFLDAYSGYHQIRMAREDEEKTAFIT 940
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 113 bits (282), Expect = 2e-23
Identities = 52/85 (61%), Positives = 68/85 (79%)
Query: 96 LMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFS 155
++ V+YPEW+AN V V KK+GK R+CVD+ DLNKA PKD++PLPHID LV+ T+ + + S
Sbjct: 853 IIEVKYPEWLANPVVVKKKNGKWRVCVDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLS 912
Query: 156 FMDGFSGYNLIKMSPEDREKTSFIT 180
FMD FSGYN I M +D+EKTSF+T
Sbjct: 913 FMDAFSGYNQILMHKDDQEKTSFVT 937
>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411637|pir||F84528 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1787
Score = 112 bits (281), Expect = 3e-23
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 96 LMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFS 155
++ V YP+W+ N V V KK+GK R+C+DF DLNKA PKD+FPLPHID LV+ TA +++ S
Sbjct: 811 IVEVRYPDWLRNPVVVKKKNGKWRVCIDFTDLNKACPKDSFPLPHIDRLVEATAGNELLS 870
Query: 156 FMDGFSGYNLIKMSPEDREKTSFIT 180
FMD FSGYN I M DREKT FIT
Sbjct: 871 FMDAFSGYNQILMHQNDREKTVFIT 895
>gb|AAO66548.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
gi|50920201|ref|XP_470461.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1380
Score = 112 bits (280), Expect = 4e-23
Identities = 56/98 (57%), Positives = 69/98 (70%)
Query: 83 LRVRFKSRLMRVFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHID 142
+R L F+ V +PEW+AN V V K +GK RMCVDF DLNKA PKD+FPLP ID
Sbjct: 840 IREELDKLLKAGFIKEVLHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRID 899
Query: 143 VLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSFIT 180
LVD+TA ++ SF+D +SGY+ I M+ ED EKTSFIT
Sbjct: 900 QLVDSTAGCELLSFIDAYSGYHQISMAKEDEEKTSFIT 937
>gb|AAV43949.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1688
Score = 112 bits (280), Expect = 4e-23
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V VPK +GK+RMC+D+ DLNKA PKD +PLPHID +VD+TA +
Sbjct: 627 FIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPHIDQIVDSTAGCDLL 686
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
F+D +SGY+ I+M+ ED EKT+FIT
Sbjct: 687 CFLDAYSGYHQIRMAREDEEKTAFIT 712
>gb|AAV43845.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1207
Score = 112 bits (280), Expect = 4e-23
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V VPK +GK+RMC+D+ DLNKA PKD +PLPHID +VD+TA +
Sbjct: 49 FIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPHIDQIVDSTAGCDLL 108
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
F+D +SGY+ I+M+ ED EKT+FIT
Sbjct: 109 CFLDAYSGYHQIRMAREDEEKTAFIT 134
>gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1194
Score = 112 bits (280), Expect = 4e-23
Identities = 53/86 (61%), Positives = 67/86 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V V K +GK RMCVDF DLNKA PKD+FPLP ID LVD+TA ++
Sbjct: 1028 FIREVFHPEWLANPVMVRKSNGKWRMCVDFTDLNKACPKDHFPLPRIDQLVDSTAGCELL 1087
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
SF+D +SGY+ I M+ ED+EKT+FIT
Sbjct: 1088 SFLDAYSGYHQISMAKEDKEKTAFIT 1113
>gb|AAS01973.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1403
Score = 112 bits (280), Expect = 4e-23
Identities = 56/98 (57%), Positives = 69/98 (70%)
Query: 83 LRVRFKSRLMRVFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHID 142
+R L F+ V +PEW+AN V V K +GK RMCVDF DLNKA PKD+FPLP ID
Sbjct: 863 IREELDKLLKAGFIKEVLHPEWLANPVMVRKANGKWRMCVDFTDLNKACPKDHFPLPRID 922
Query: 143 VLVDNTAQSKVFSFMDGFSGYNLIKMSPEDREKTSFIT 180
LVD+TA ++ SF+D +SGY+ I M+ ED EKTSFIT
Sbjct: 923 QLVDSTAGCELLSFIDAYSGYHQISMAKEDEEKTSFIT 960
>gb|AAP46242.1| putative gag-pol precursor, 3'-partial [Oryza sativa (japonica
cultivar-group)]
Length = 948
Score = 112 bits (279), Expect = 5e-23
Identities = 50/86 (58%), Positives = 67/86 (77%)
Query: 95 FLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVF 154
F+ V +PEW+AN V VPK +GK+RMC+D+ DLNKA PKD FPLPHID +VD+TA +
Sbjct: 670 FIREVIHPEWLANPVVVPKANGKLRMCIDYTDLNKACPKDPFPLPHIDQIVDSTAGCDLL 729
Query: 155 SFMDGFSGYNLIKMSPEDREKTSFIT 180
F+D +SGY+ I+M+ +D EKT+FIT
Sbjct: 730 CFLDAYSGYHQIRMARKDEEKTAFIT 755
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.347 0.151 0.514
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 933,655,082
Number of Sequences: 2540612
Number of extensions: 34048228
Number of successful extensions: 137802
Number of sequences better than 10.0: 1637
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 136040
Number of HSP's gapped (non-prelim): 1846
length of query: 650
length of database: 863,360,394
effective HSP length: 135
effective length of query: 515
effective length of database: 520,377,774
effective search space: 267994553610
effective search space used: 267994553610
T: 11
A: 40
X1: 15 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.7 bits)
S2: 78 (34.7 bits)
Medicago: description of AC140850.3