BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140848.2 + phase: 0 /pseudo
(573 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC64109.1| signal recognition particle 54 kDa subunit precur... 801 0.0
gb|AAN41376.1| putative signal recognition particle 54CP protein... 760 0.0
gb|AAC64139.1| signal recognition particle 54 kDa subunit precur... 757 0.0
gb|AAX92735.1| signal recognition particle protein, putative [Or... 680 0.0
gb|AAX95238.1| signal recognition particle protein, putative [Or... 590 e-167
ref|ZP_00324395.1| COG0541: Signal recognition particle GTPase [... 478 e-133
pir||S68160 probable RNA binding protein ffh - Synechococcus sp.... 478 e-133
emb|CAA63054.1| signal sequence binding protein [Synechococcus s... 476 e-133
ref|YP_173031.1| signal recognition particle receptor [Synechoco... 475 e-132
ref|ZP_00110921.1| COG0541: Signal recognition particle GTPase [... 474 e-132
dbj|BAB73651.1| signal recognition particle protein [Nostoc sp. ... 474 e-132
ref|ZP_00162376.2| COG0541: Signal recognition particle GTPase [... 473 e-132
ref|NP_441626.1| signal recognition particle protein [Synechocys... 473 e-132
ref|NP_682763.1| signal recognition particle protein [Thermosyne... 470 e-131
ref|ZP_00518055.1| Signal recognition particle protein [Crocosph... 469 e-130
gb|AAQ00404.1| Signal recognition particle GTPase [Prochlorococc... 447 e-124
emb|CAE08133.1| signal recognition particle protein (SRP54) [Syn... 445 e-123
emb|CAE20524.1| signal recognition particle protein (SRP54) [Pro... 439 e-121
ref|NP_893403.1| signal recognition particle protein (SRP54) [Pr... 430 e-119
ref|NP_925585.1| signal recognition particle protein SRP54 [Gloe... 429 e-119
>gb|AAC64109.1| signal recognition particle 54 kDa subunit precursor [Pisum
sativum]
Length = 525
Score = 801 bits (2069), Expect = 0.0
Identities = 439/550 (79%), Positives = 465/550 (83%), Gaps = 40/550 (7%)
Query: 34 RNSFAKEIWGFVQSKSVTMRRMDMIRPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNI 93
RNSFA+EIWG VQSKS+T RR DMIRPVVVRAEMFGQLT+GLESAWNKLK EEVLTK+NI
Sbjct: 5 RNSFAREIWGLVQSKSLTSRRTDMIRPVVVRAEMFGQLTSGLESAWNKLKREEVLTKENI 64
Query: 94 VEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMG 153
VEPMRDIRRA ADVSLPVVRRFVQSVTD+AVGVGVTRGVKPDQQLVKIVHDELVQLMG
Sbjct: 65 VEPMRDIRRA--RADVSLPVVRRFVQSVTDKAVGVGVTRGVKPDQQLVKIVHDELVQLMG 122
Query: 154 GEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQL 213
GEVSELTFA +GPTVILLAGLQGVGKTTVCAKLA YFKKQGKSCMLVAGDVYRPAAID L
Sbjct: 123 GEVSELTFANSGPTVILLAGLQGVGKTTVCAKLATYFKKQGKSCMLVAGDVYRPAAIDXL 182
Query: 214 TILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDV 273
TILGKQVDVPVY AGTDVKPS IAKQGFEEAKKKKIDVVIVDTAG LQIDKAMMDELK+V
Sbjct: 183 TILGKQVDVPVYAAGTDVKPSVIAKQGFEEAKKKKIDVVIVDTAGSLQIDKAMMDELKEV 242
Query: 274 KRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGK 333
K+VLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGK
Sbjct: 243 KQVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGK 302
Query: 334 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKF 393
PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM +EDAED+QKKIMSAKF
Sbjct: 303 PIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMLEEDAEDMQKKIMSAKF 362
Query: 394 DFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIKAMTPEEREK 453
DFND LKQTR VA+MGSVSRV+GMIPGMAKVTPAQIREAE+NL+ MEVII+AMTPEER K
Sbjct: 363 DFNDLLKQTRTVAKMGSVSRVLGMIPGMAKVTPAQIREAEKNLQFMEVIIEAMTPEERGK 422
Query: 454 PELLAESPVRRKRVAQDSGKTEQQTDAILS-------NFEKYTTIMSGKPTCSSTISNAC 506
PELLAE PVRRK VAQ+SGKTEQQ +++ +K +M G T+SN
Sbjct: 423 PELLAEFPVRRKSVAQESGKTEQQVSQLVAQLFQMRVRMKKLMGVMEG--GSMPTLSNL- 479
Query: 507 SDEEPNGCNGRWIDANT**S*GST*NRGKVCLYQAPPGTARRRKKAESRRLF--ADSTLR 564
EE N + APPGTARR+KK +RLF S +
Sbjct: 480 --EEALKANKK-----------------------APPGTARRKKKGGLKRLFKGRSSKIS 514
Query: 565 QP-PRGFGSK 573
P PRGFGSK
Sbjct: 515 LPAPRGFGSK 524
>gb|AAN41376.1| putative signal recognition particle 54CP protein precursor
[Arabidopsis thaliana] gi|396701|emb|CAA79981.1| 54CP
[Arabidopsis thaliana] gi|7406404|emb|CAB85514.1| signal
recognition particle 54CP protein precursor [Arabidopsis
thaliana] gi|15293131|gb|AAK93676.1| putative signal
recognition particle 54CP protein precursor [Arabidopsis
thaliana] gi|15237580|ref|NP_196014.1| signal
recognition particle 54 kDa protein, chloroplast / 54
chloroplast protein / SRP54 (FFC) [Arabidopsis thaliana]
gi|480296|pir||S36637 signal recognition particle 54CP
protein precursor - Arabidopsis thaliana
gi|586038|sp|P37107|SR5C_ARATH Signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC)
Length = 564
Score = 760 bits (1962), Expect = 0.0
Identities = 410/559 (73%), Positives = 457/559 (81%), Gaps = 43/559 (7%)
Query: 23 SSSKLCSSLSYRNSFAKEIWGFVQSKSVTMRRMDMIRPVVVRAEMFGQLTTGLESAWNKL 82
+S+ L SS RN +EIW +V+SK+V R VRAEMFGQLT GLE+AW+KL
Sbjct: 38 NSASLSSS---RNLSTREIWSWVKSKTVVGH--GRYRRSQVRAEMFGQLTGGLEAAWSKL 92
Query: 83 KGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVK 142
KGEEVLTKDNI EPMRDIRRALLEADVSLPVVRRFVQSV+DQAVG+GV RGVKPDQQLVK
Sbjct: 93 KGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVK 152
Query: 143 IVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAG 202
IVHDELV+LMGGEVSEL FAK+GPTVILLAGLQGVGKTTVCAKLA Y KKQGKSCML+AG
Sbjct: 153 IVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAG 212
Query: 203 DVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQI 262
DVYRPAAIDQL ILG+QV VPVYTAGTDVKP+DIAKQG +EAKK +DVVI+DTAGRLQI
Sbjct: 213 DVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQI 272
Query: 263 DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGG 322
DK MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGG
Sbjct: 273 DKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGG 332
Query: 323 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAE 382
AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE
Sbjct: 333 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAE 392
Query: 383 DLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVI 442
DLQKKIMSAKFDFNDFLKQTRAVA+MGS++RV+GMIPGM KV+PAQIREAE+NL +ME +
Sbjct: 393 DLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAM 452
Query: 443 IKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFEKYTTIM--------SG 494
I+ MTPEERE+PELLAESP RRKR+A+DSGKTEQQ A+++ + M G
Sbjct: 453 IEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGG 512
Query: 495 KPTCSSTISNACSDEEPNGCNGRWIDANT**S*GST*NRGKVCLYQAPPGTARRRKKAES 554
S + +A E+ +APPGTARR++KA+S
Sbjct: 513 SIPALSGLEDALKAEQ-----------------------------KAPPGTARRKRKADS 543
Query: 555 RRLFADSTLRQP-PRGFGS 572
R+ F +S +P PRGFGS
Sbjct: 544 RKKFVESASSKPGPRGFGS 562
>gb|AAC64139.1| signal recognition particle 54 kDa subunit precursor [Arabidopsis
thaliana]
Length = 564
Score = 757 bits (1955), Expect = 0.0
Identities = 409/559 (73%), Positives = 456/559 (81%), Gaps = 43/559 (7%)
Query: 23 SSSKLCSSLSYRNSFAKEIWGFVQSKSVTMRRMDMIRPVVVRAEMFGQLTTGLESAWNKL 82
+S+ L SS RN +EIW +V+SK+V R VRA MFGQLT GLE+AW+KL
Sbjct: 38 NSASLSSS---RNLSTREIWSWVKSKTVVGH--GRYRRSQVRAVMFGQLTGGLEAAWSKL 92
Query: 83 KGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAVGVGVTRGVKPDQQLVK 142
KGEEVLTKDNI EPMRDIRRALLEADVSLPVVRRFVQSV+DQAVG+GV RGVKPDQQLVK
Sbjct: 93 KGEEVLTKDNIAEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGMGVIRGVKPDQQLVK 152
Query: 143 IVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAG 202
IVHDELV+LMGGEVSEL FAK+GPTVILLAGLQGVGKTTVCAKLA Y KKQGKSCML+AG
Sbjct: 153 IVHDELVKLMGGEVSELQFAKSGPTVILLAGLQGVGKTTVCAKLACYLKKQGKSCMLIAG 212
Query: 203 DVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQI 262
DVYRPAAIDQL ILG+QV VPVYTAGTDVKP+DIAKQG +EAKK +DVVI+DTAGRLQI
Sbjct: 213 DVYRPAAIDQLVILGEQVGVPVYTAGTDVKPADIAKQGLKEAKKNNVDVVIMDTAGRLQI 272
Query: 263 DKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGG 322
DK MMDELKDVK+ LNPTEVLLVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGG
Sbjct: 273 DKGMMDELKDVKKFLNPTEVLLVVDAMTGQEAAALVTTFNVEIGITGAILTKLDGDSRGG 332
Query: 323 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAE 382
AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKA EVM+QEDAE
Sbjct: 333 AALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKATEVMRQEDAE 392
Query: 383 DLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVI 442
DLQKKIMSAKFDFNDFLKQTRAVA+MGS++RV+GMIPGM KV+PAQIREAE+NL +ME +
Sbjct: 393 DLQKKIMSAKFDFNDFLKQTRAVAKMGSMTRVLGMIPGMGKVSPAQIREAEKNLLVMEAM 452
Query: 443 IKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFEKYTTIM--------SG 494
I+ MTPEERE+PELLAESP RRKR+A+DSGKTEQQ A+++ + M G
Sbjct: 453 IEVMTPEERERPELLAESPERRKRIAKDSGKTEQQVSALVAQIFQMRVKMKNLMGVMEGG 512
Query: 495 KPTCSSTISNACSDEEPNGCNGRWIDANT**S*GST*NRGKVCLYQAPPGTARRRKKAES 554
S + +A E+ +APPGTARR++KA+S
Sbjct: 513 SIPALSGLEDALKAEQ-----------------------------KAPPGTARRKRKADS 543
Query: 555 RRLFADSTLRQP-PRGFGS 572
R+ F +S +P PRGFGS
Sbjct: 544 RKKFVESASSKPGPRGFGS 562
>gb|AAX92735.1| signal recognition particle protein, putative [Oryza sativa
(japonica cultivar-group)]
Length = 557
Score = 680 bits (1754), Expect = 0.0
Identities = 358/485 (73%), Positives = 403/485 (82%), Gaps = 20/485 (4%)
Query: 2 EAVLASRHL---STPLSHHRTTASSSSKLCSSLSYRNSFAKEIWGFVQSKSVTMRRMDMI 58
+A++AS HL S P H R S + S + K G
Sbjct: 25 KAIVASHHLRHSSVPALHLRAVPGPSFRALPSPGFPGWRRKRGSG--------------- 69
Query: 59 RPVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFV 118
+VVRAEMFGQLTTGLESAWNKL+G + LTKDNI EPMRDIRRALLEADVSLPVVR F+
Sbjct: 70 --LVVRAEMFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFI 127
Query: 119 QSVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVG 178
+SVT++AVG V RGVKP+QQLVK+V+DELVQLMGGEVS+L FAKT PTVILLAGLQGVG
Sbjct: 128 ESVTEKAVGTDVIRGVKPEQQLVKVVNDELVQLMGGEVSDLVFAKTAPTVILLAGLQGVG 187
Query: 179 KTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAK 238
KTTVCAKLA Y KK GKSCML+A DVYRPAAIDQLTILGKQV VPVY+ GT+ KPS IAK
Sbjct: 188 KTTVCAKLAYYLKKMGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAK 247
Query: 239 QGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALV 298
G +EAK KK DV+IVDTAGRLQ+DKAMM ELK+VKR +NPTEVLLVVDAMTGQEAA+LV
Sbjct: 248 NGIKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAASLV 307
Query: 299 TTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGR 358
+TFN+EIGITGAILTKLDGDSRGGAALS+KEVSGKPIK VGRGERMEDLEPFYPDRMA R
Sbjct: 308 STFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRMAQR 367
Query: 359 ILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMI 418
ILGMGDVLSFVEKAQEVM+QEDAE+LQKKI+SAKF+FNDFLKQT+A+AQMGS SR+IGMI
Sbjct: 368 ILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIAQMGSFSRIIGMI 427
Query: 419 PGMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQT 478
PGM KVTPAQIREAE+NL+ ME +I MTPEERE+PELLAES RR RVA++SGK E+Q
Sbjct: 428 PGMNKVTPAQIREAEKNLKFMESMINVMTPEERERPELLAESRERRIRVAKESGKNERQV 487
Query: 479 DAILS 483
+++
Sbjct: 488 SQLVA 492
>gb|AAX95238.1| signal recognition particle protein, putative [Oryza sativa
(japonica cultivar-group)]
Length = 1072
Score = 590 bits (1520), Expect = e-167
Identities = 320/477 (67%), Positives = 375/477 (78%), Gaps = 54/477 (11%)
Query: 61 VVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQS 120
+VVRAEMFGQLTTGLESAWNKL+G +VLTK+NIVEPMRDIRRALLEADVSLPVVRRFV S
Sbjct: 65 LVVRAEMFGQLTTGLESAWNKLRGVDVLTKENIVEPMRDIRRALLEADVSLPVVRRFVSS 124
Query: 121 VTDQAVGVGVTRGVKPDQQLVK-----------------IVHDELVQLMGGEVSELTFAK 163
++++A+G + RGV+P+QQLVK IVHDELV+LMGGEVS+L FAK
Sbjct: 125 ISEKALGSDLIRGVRPEQQLVKTNLCAFSTGQITYSVVQIVHDELVKLMGGEVSDLVFAK 184
Query: 164 TGPTVILLAGLQGVGKTTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVP 223
+GPTVILLAGLQ DVYRPAAIDQLTILG+QV VP
Sbjct: 185 SGPTVILLAGLQ---------------------------DVYRPAAIDQLTILGEQVGVP 217
Query: 224 VYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVL 283
VY+ GT+ KP+ I K EEAK+K ID +++DTAGRLQIDK+MM ELK+VK+ +NPTEVL
Sbjct: 218 VYSEGTEAKPAQITKNAVEEAKRKNIDAIVMDTAGRLQIDKSMMVELKEVKKAVNPTEVL 277
Query: 284 LVVDAMTGQEAAALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGER 343
LVVDAMTGQEAAALVTTFN+EIGITGAILTKLDGDSRGGAALSVKEVSGKPIK VGRGER
Sbjct: 278 LVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGER 337
Query: 344 MEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTR 403
MEDLE FYPDRMA R+LGMGDVLSFVEKAQEVM+QEDA +LQKKIMSAKFDFNDFLKQ++
Sbjct: 338 MEDLELFYPDRMAQRVLGMGDVLSFVEKAQEVMRQEDAVELQKKIMSAKFDFNDFLKQSQ 397
Query: 404 AVAQMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVR 463
VA+MGS+SRV+GMIPGM KVTPAQIREAE+ L +E +I AMT EEREKPELLAES R
Sbjct: 398 NVAKMGSMSRVVGMIPGMNKVTPAQIREAEKRLAFVESMINAMTAEEREKPELLAESRDR 457
Query: 464 RKRVAQDSGKTEQQTDAIL-------SNFEKYTTIMSGK---PTCSSTISNACSDEE 510
R RVA++SGK+EQ+ ++ + +K +M+G+ P + + + +DE+
Sbjct: 458 RIRVAEESGKSEQEVSQLVAQLFQMRAQMQKLMGVMTGQEALPGMGNLMESLNADEK 514
Score = 566 bits (1458), Expect = e-160
Identities = 304/431 (70%), Positives = 338/431 (77%), Gaps = 59/431 (13%)
Query: 61 VVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQS 120
+VVRAEMFGQLTTGLESAWNKL+G + LTKDNI EPMRDIRRALLEADVSLPVVR F++S
Sbjct: 524 LVVRAEMFGQLTTGLESAWNKLRGTDQLTKDNIAEPMRDIRRALLEADVSLPVVRSFIES 583
Query: 121 VTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKT 180
VT++AVG V RGVKP+QQLVK
Sbjct: 584 VTEKAVGTDVIRGVKPEQQLVK-------------------------------------- 605
Query: 181 TVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQG 240
+ QGKSCML+A DVYRPAAIDQLTILGKQV VPVY+ GT+ KPS IAK G
Sbjct: 606 -------TSLRLQGKSCMLIAADVYRPAAIDQLTILGKQVGVPVYSEGTEAKPSQIAKNG 658
Query: 241 FEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAA----- 295
+EAK KK DV+IVDTAGRLQ+DKAMM ELK+VKR +NPTEVLLVVDAMTGQEAA
Sbjct: 659 IKEAKSKKTDVIIVDTAGRLQVDKAMMSELKEVKRAVNPTEVLLVVDAMTGQEAAFALRL 718
Query: 296 ---------ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMED 346
ALV+TFN+EIGITGAILTKLDGDSRGGAALS+KEVSGKPIK VGRGERMED
Sbjct: 719 TRISFLIWPALVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMED 778
Query: 347 LEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVA 406
LEPFYPDRMA RILGMGDVLSFVEKAQEVM+QEDAE+LQKKI+SAKF+FNDFLKQT+A+A
Sbjct: 779 LEPFYPDRMAQRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIA 838
Query: 407 QMGSVSRVIGMIPGMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKR 466
QMGS SR+IGMIPGM KVTPAQIREAE+NL+ ME +I MTPEERE+PELLAES RR R
Sbjct: 839 QMGSFSRIIGMIPGMNKVTPAQIREAEKNLKFMESMINVMTPEERERPELLAESRERRIR 898
Query: 467 VAQDSGKTEQQ 477
VA++SGK E+Q
Sbjct: 899 VAKESGKNERQ 909
>ref|ZP_00324395.1| COG0541: Signal recognition particle GTPase [Trichodesmium
erythraeum IMS101]
Length = 483
Score = 478 bits (1231), Expect = e-133
Identities = 240/426 (56%), Positives = 319/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +T NI + + ++RRALLEADV+L VV+ F+ V+ +A
Sbjct: 1 MFEALADRLEVAWKKLRGQDKITDSNIQQALGEVRRALLEADVNLQVVKGFIAEVSSKAK 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV+PDQQ +KIVHDEL Q+MG + L A PT++L+AGLQG GKTT AKL
Sbjct: 61 GADVLTGVRPDQQFIKIVHDELAQIMGESNAPLAKADQPPTIVLMAGLQGTGKTTASAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K+ +S +LVA DVYRPAAIDQL LGKQ+DVPV+ GTD+ P +IA++G E+AK
Sbjct: 121 ALHLRKENRSALLVATDVYRPAAIDQLVTLGKQIDVPVFELGTDIDPVEIAQKGLEKAKA 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
ID+VI+DTAGRLQID+ MM EL +K + P E LLVVDAMTGQEAA L TFN +IG
Sbjct: 181 DGIDIVIIDTAGRLQIDQDMMAELARIKAAVKPQETLLVVDAMTGQEAATLTRTFNDQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTK+DGD+RGGAALSV+ +SG+PIK +G GE++E L+PFYP+RMA RILGMGDVL
Sbjct: 241 ITGAILTKMDGDTRGGAALSVRRISGQPIKFIGVGEKVEALQPFYPERMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE DAE +Q+KI+SAKFDF DFLKQTR + MGS+ ++ +IPGM K++
Sbjct: 301 TLVEKAQEEFDIADAEKMQEKILSAKFDFTDFLKQTRLMKNMGSLGGIMKLIPGMNKISD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
++++ E L+ E +I +MT +ER+ PELLA+SP RR+R+A SG E+ ++S+F+
Sbjct: 361 DKLQQGETQLKRCESMINSMTRQERQNPELLAKSPSRRRRIAGGSGYAEKDVSKLVSDFQ 420
Query: 487 KYTTIM 492
+ ++M
Sbjct: 421 RMRSLM 426
>pir||S68160 probable RNA binding protein ffh - Synechococcus sp. (strain PCC
7942)
Length = 496
Score = 478 bits (1229), Expect = e-133
Identities = 242/430 (56%), Positives = 323/430 (74%), Gaps = 1/430 (0%)
Query: 64 RAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTD 123
R+ MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V +
Sbjct: 9 RSFMFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQE 68
Query: 124 QAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVC 183
+AVG V G++PDQQ +K+V+DELVQ+MG L A PTVIL+AGLQG GKTT
Sbjct: 69 KAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTAT 128
Query: 184 AKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEE 243
AKLA + +K+G+S +LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E+
Sbjct: 129 AKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEK 188
Query: 244 AKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNL 303
A+++ ID VIVDTAGRLQID MM+EL VK + P EVLLVVD+M GQEAA+L +F+
Sbjct: 189 ARQEGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHE 248
Query: 304 EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 363
IGITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMG
Sbjct: 249 RIGITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMG 308
Query: 364 DVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGM-A 422
DVL+ VEKAQE + D E +Q+KI++AKFDF DFLKQ R + MGS++ I +IPG+
Sbjct: 309 DVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGG 368
Query: 423 KVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAIL 482
K+ Q+R+ ER L+ +E +I +MTP+ER P+LL+ SP RR R+A+ G+TE + I+
Sbjct: 369 KINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQII 428
Query: 483 SNFEKYTTIM 492
F++ T+M
Sbjct: 429 QQFQQMRTMM 438
>emb|CAA63054.1| signal sequence binding protein [Synechococcus sp.]
gi|2500884|sp|Q55311|SR54_SYNP7 SIGNAL SEQUENCE BINDING
PROTEIN gi|45513246|ref|ZP_00164812.1| COG0541: Signal
recognition particle GTPase [Synechococcus elongatus PCC
7942]
Length = 485
Score = 476 bits (1226), Expect = e-133
Identities = 241/427 (56%), Positives = 321/427 (74%), Gaps = 1/427 (0%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V ++AV
Sbjct: 1 MFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQEKAV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V G++PDQQ +K+V+DELVQ+MG L A PTVIL+AGLQG GKTT AKL
Sbjct: 61 GTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K+G+S +LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E+A++
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEKARQ 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ ID VIVDTAGRLQID MM+EL VK + P EVLLVVD+M GQEAA+L +F+ IG
Sbjct: 181 EGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAASLTRSFHERIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTKLDGDSRGGAALS++ VSG+PIK VG GE++E L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGAILTKLDGDSRGGAALSIRRVSGQPIKFVGLGEKVEALQPFHPERMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGM-AKVT 425
+ VEKAQE + D E +Q+KI++AKFDF DFLKQ R + MGS++ I +IPG+ K+
Sbjct: 301 TLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGGKIN 360
Query: 426 PAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNF 485
Q+R+ ER L+ +E +I +MTP+ER P+LL+ SP RR R+A+ G+TE + I+ F
Sbjct: 361 DEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQIIQQF 420
Query: 486 EKYTTIM 492
++ T+M
Sbjct: 421 QQMRTMM 427
>ref|YP_173031.1| signal recognition particle receptor [Synechococcus elongatus PCC
6301] gi|56687289|dbj|BAD80511.1| signal recognition
particle receptor [Synechococcus elongatus PCC 6301]
Length = 496
Score = 475 bits (1222), Expect = e-132
Identities = 241/430 (56%), Positives = 321/430 (74%), Gaps = 1/430 (0%)
Query: 64 RAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTD 123
R+ MF L LE AW KL+G++ +++ N+ E ++++RRALLEADV+L VV+ F+ V +
Sbjct: 9 RSFMFDALAERLEQAWTKLRGQDKISESNVQEALKEVRRALLEADVNLGVVKEFIAQVQE 68
Query: 124 QAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVC 183
+AVG V G++PDQQ +K+V+DELVQ+MG L A PTVIL+AGLQG GKTT
Sbjct: 69 KAVGTQVISGIRPDQQFIKVVYDELVQVMGETHVPLAQAAKAPTVILMAGLQGAGKTTAT 128
Query: 184 AKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEE 243
AKLA + +K+G+S +LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E+
Sbjct: 129 AKLALHLRKEGRSTLLVATDVYRPAAIDQLITLGKQIDVPVFELGSDANPVEIARQGVEK 188
Query: 244 AKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNL 303
A+++ ID VIVDTAGRLQID MM+EL VK + P EVLLVVD+M GQEA +L +F+
Sbjct: 189 ARQEGIDTVIVDTAGRLQIDTEMMEELAQVKEAIAPHEVLLVVDSMIGQEAPSLTRSFHE 248
Query: 304 EIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMG 363
IGITGAILTKLDGDSRGGAALS++ VSG PIK VG GE++E L+PF+P+RMA RILGMG
Sbjct: 249 RIGITGAILTKLDGDSRGGAALSIRRVSGHPIKFVGLGEKVEALQPFHPERMASRILGMG 308
Query: 364 DVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGM-A 422
DVL+ VEKAQE + D E +Q+KI++AKFDF DFLKQ R + MGS++ I +IPG+
Sbjct: 309 DVLTLVEKAQEEIDLADVEKMQEKILAAKFDFTDFLKQMRLLKNMGSLAGFIKLIPGLGG 368
Query: 423 KVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAIL 482
K+ Q+R+ ER L+ +E +I +MTP+ER P+LL+ SP RR R+A+ G+TE + I+
Sbjct: 369 KINDEQLRQGERQLKRVEAMINSMTPQERRDPDLLSNSPSRRHRIAKGCGQTEAEIRQII 428
Query: 483 SNFEKYTTIM 492
F++ T+M
Sbjct: 429 QQFQQMRTMM 438
>ref|ZP_00110921.1| COG0541: Signal recognition particle GTPase [Nostoc punctiforme PCC
73102]
Length = 488
Score = 474 bits (1221), Expect = e-132
Identities = 241/426 (56%), Positives = 316/426 (73%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ LE+AW KL+G++ +++ NI + +R++RRALLEADV+L VV+ F+ V +A
Sbjct: 1 MFDALSDRLEAAWKKLRGQDKISQSNIQDALREVRRALLEADVNLQVVKDFISEVEAKAQ 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV+PDQQ +KIVHDELV++MG E + A+ PT++L+AGLQG GKTT AKL
Sbjct: 61 GAEVVTGVRPDQQFIKIVHDELVEVMGEENVPIAEAQEKPTIVLMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K +SC+LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E A+
Sbjct: 121 ALHLRKLDRSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVERARA 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ ++ VI+DTAGRLQID+ MM EL +K + P E LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 EGVNTVIIDTAGRLQIDEDMMAELARIKATVQPHETLLVVDAMTGQEAANLTRTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTK+DGDSRGGAALSV+++SG PIK VG GE++E L+PFYPDRMA RILGMGDVL
Sbjct: 241 ITGAILTKMDGDSRGGAALSVRKISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE DAE +Q+KI+SAKFDF DFLKQ R + MGS+ I MIPGM K++
Sbjct: 301 TLVEKAQEEFDLADAEKMQEKILSAKFDFTDFLKQLRMLKNMGSLGGFIKMIPGMNKLSD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
Q+++ E L+ E +I +MT +ER P+LLA SP RR+R+A SG E ++ +F+
Sbjct: 361 DQLKQGETQLKRCEAMINSMTRQERHDPDLLASSPSRRRRIAAGSGYRESDVTKLVGDFQ 420
Query: 487 KYTTIM 492
K ++M
Sbjct: 421 KMRSLM 426
>dbj|BAB73651.1| signal recognition particle protein [Nostoc sp. PCC 7120]
gi|17229444|ref|NP_485992.1| signal recognition particle
protein [Nostoc sp. PCC 7120] gi|25294426|pir||AB2050
signal recognition particle protein [imported] - Nostoc
sp. (strain PCC 7120)
Length = 490
Score = 474 bits (1219), Expect = e-132
Identities = 240/426 (56%), Positives = 317/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LESAW KL+G++ +++ NI + +R++RRALLEADV+L VV+ F+ V +A
Sbjct: 1 MFDALADRLESAWKKLRGQDKISESNIQDALREVRRALLEADVNLQVVKDFISEVEAKAQ 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV+PDQQ +KIV+DELVQ+MG E L + PT++L+AGLQG GKTT AKL
Sbjct: 61 GAEVISGVRPDQQFIKIVYDELVQVMGEENVPLAEVEQKPTIVLMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K +SC+LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E AK
Sbjct: 121 ALHLRKLERSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVERAKA 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ ++ VI+DTAGRLQID+ MM EL +K + P E LLVVD+MTGQEAA L TF+ +IG
Sbjct: 181 EGVNTVIIDTAGRLQIDEDMMAELARIKETVQPHETLLVVDSMTGQEAANLTRTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTK+DGDSRGGAALSV+++SG PIK VG GE++E L+PFYPDRMA RILGMGDVL
Sbjct: 241 ITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE DAE +Q+KI+SAKFDF DF+KQ R + MGS+ ++ MIPGM K++
Sbjct: 301 TLVEKAQEEFDLADAEKMQEKILSAKFDFTDFVKQLRMLKNMGSLGGLLKMIPGMGKLSD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
Q+++ E L+ E +I +MT +ER P+LLA SP RR+R+A SG E + ++++F+
Sbjct: 361 DQLKQGETQLKRCEAMINSMTMQERRDPDLLASSPNRRRRIASGSGYKEADVNKLVADFQ 420
Query: 487 KYTTIM 492
K ++M
Sbjct: 421 KMRSLM 426
>ref|ZP_00162376.2| COG0541: Signal recognition particle GTPase [Anabaena variabilis
ATCC 29413]
Length = 490
Score = 473 bits (1218), Expect = e-132
Identities = 240/426 (56%), Positives = 317/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LESAW KL+G++ +++ NI + +R++RRALLEADV+L VV+ F+ V +A
Sbjct: 1 MFDALADRLESAWKKLRGQDKISESNIQDALREVRRALLEADVNLQVVKDFISEVEAKAQ 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV+PDQQ +KIV+DELVQ+MG E L + PT++L+AGLQG GKTT AKL
Sbjct: 61 GAEVISGVRPDQQFIKIVYDELVQVMGEENVPLAEVEQKPTIVLMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K +SC+LVA DVYRPAAIDQL LGKQ+DVPV+ G+D P +IA+QG E AK
Sbjct: 121 ALHLRKLERSCLLVATDVYRPAAIDQLLTLGKQIDVPVFELGSDADPVEIARQGVERAKA 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ ++ VI+DTAGRLQID+ MM EL +K + P E LLVVD+MTGQEAA L TF+ +IG
Sbjct: 181 EGVNTVIIDTAGRLQIDEDMMAELARIKETVQPHETLLVVDSMTGQEAANLTRTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTK+DGDSRGGAALSV+++SG PIK VG GE++E L+PFYPDRMA RILGMGDVL
Sbjct: 241 ITGAILTKMDGDSRGGAALSVRQISGAPIKFVGVGEKVEALQPFYPDRMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE DAE +Q+KI+SAKFDF DF+KQ R + MGS+ ++ MIPGM K++
Sbjct: 301 TLVEKAQEEFDLADAEKMQEKILSAKFDFTDFVKQLRMLKNMGSLGGLLKMIPGMGKLSD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
Q+++ E L+ E +I +MT +ER P+LLA SP RR+R+A SG E + ++++F+
Sbjct: 361 DQLKQGETQLKRCEAMINSMTIQERRDPDLLASSPNRRRRIASGSGYKEADVNKLVADFQ 420
Query: 487 KYTTIM 492
K ++M
Sbjct: 421 KMRSLM 426
>ref|NP_441626.1| signal recognition particle protein [Synechocystis sp. PCC 6803]
gi|1653392|dbj|BAA18306.1| signal recognition particle
protein [Synechocystis sp. PCC 6803]
gi|2500885|sp|P74214|SRP54_SYNY3 Signal recognition
particle protein (Fifty-four homolog)
Length = 482
Score = 473 bits (1216), Expect = e-132
Identities = 239/426 (56%), Positives = 316/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +++ NI E ++++RRALL ADV+L VV+ F++ V +A+
Sbjct: 1 MFDALADRLEDAWKKLRGQDKISESNIKEALQEVRRALLAADVNLQVVKGFIKDVEQKAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV P QQ +KIV+DELV LMG L A+ PTVIL+AGLQG GKTT AKL
Sbjct: 61 GADVISGVNPGQQFIKIVYDELVNLMGESNVPLAQAEQAPTVILMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A Y +KQ +S ++VA DVYRPAAIDQL LG+Q+DVPV+ G+D P +IA+QG E+AK+
Sbjct: 121 ALYLRKQKRSALMVATDVYRPAAIDQLKTLGQQIDVPVFDLGSDANPVEIARQGVEKAKE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+D V++DTAGRLQID MM EL ++K+V+ P + LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 LGVDTVLIDTAGRLQIDPQMMAELAEIKQVVKPDDTLLVVDAMTGQEAANLTHTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDR+A RIL MGDVL
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRLASRILNMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE + D E LQ KI+ A FDF+DF+KQ R + MGS+ ++ MIPGM K++
Sbjct: 301 TLVEKAQEAIDVGDVEKLQNKILEATFDFDDFIKQMRFMKNMGSLGGLLKMIPGMNKLSS 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
I + E+ L+ E +I +MT EER+ P+LLA+SP RR+R+AQ SG +E +++NF
Sbjct: 361 GDIEKGEKELKRTEAMISSMTTEERKNPDLLAKSPSRRRRIAQGSGHSETDVSKLITNFT 420
Query: 487 KYTTIM 492
K T+M
Sbjct: 421 KMRTMM 426
>ref|NP_682763.1| signal recognition particle protein [Thermosynechococcus elongatus
BP-1] gi|22295699|dbj|BAC09525.1| signal recognition
particle protein [Thermosynechococcus elongatus BP-1]
Length = 469
Score = 470 bits (1209), Expect = e-131
Identities = 237/426 (55%), Positives = 319/426 (74%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LESAW L+G++ +T++NI E +R++RRALLEADV+L V + F+++V +A+
Sbjct: 1 MFDALAERLESAWKTLRGQDKITENNIQEALREVRRALLEADVNLQVAKDFIENVRQRAI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV+PDQQ +KIV+D LV++MG S L + PT+IL+AGLQG GKTT AKL
Sbjct: 61 GAEVIAGVRPDQQFIKIVYDALVEVMGESHSPLAHVEPPPTIILMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
A + +K+G+S +LVA DVYRPAAIDQL LGKQ+ VPV+ GT+V P +IA+QG +AK+
Sbjct: 121 ALHLRKEGRSTLLVATDVYRPAAIDQLMTLGKQIGVPVFEMGTEVSPVEIARQGVAKAKE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+D VI+DTAGRLQID MM EL +K + P E LLVVDAMTGQEAA L F+ ++G
Sbjct: 181 LGVDTVIIDTAGRLQIDAEMMAELAAIKEGVQPHETLLVVDAMTGQEAANLTRAFHEQVG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGAILTKLDGD+RGGAALSV++VSG+PIK +G GE++E L+PFYPDR+A RILGMGDVL
Sbjct: 241 ITGAILTKLDGDTRGGAALSVRQVSGQPIKFIGVGEKVEALQPFYPDRLASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE + DAE + +KI+ A+FDF+DFLKQ R + MGS++ +I +IPGM K++
Sbjct: 301 TLVEKAQEEVDLADAEKMSRKILEAQFDFDDFLKQLRLLKNMGSLAGIIKLIPGMNKIST 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
Q+++ E+ L+ E +I +MT EER PELLA SP RR+RVA+ SG ++S+F+
Sbjct: 361 EQLQQGEQQLKRAEAMINSMTREERRNPELLASSPSRRERVAKGSGYQVADVTKLVSDFQ 420
Query: 487 KYTTIM 492
+ ++M
Sbjct: 421 RMRSLM 426
>ref|ZP_00518055.1| Signal recognition particle protein [Crocosphaera watsonii WH 8501]
gi|67853517|gb|EAM48865.1| Signal recognition particle
protein [Crocosphaera watsonii WH 8501]
Length = 488
Score = 469 bits (1206), Expect = e-130
Identities = 237/426 (55%), Positives = 312/426 (72%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L LE AW KL+G++ +T+ N+ + ++++RRALLEADV+L VV+ F+ V A+
Sbjct: 1 MFDALADRLEDAWKKLRGQDKITEANMQDALKEVRRALLEADVNLQVVKTFIAEVEKAAI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V GV P QQL+KIV+DELV++MG L A+ PTVIL+AGLQG GKTT AKL
Sbjct: 61 GAEVIAGVNPGQQLIKIVYDELVKVMGESNVPLAQAEKSPTVILMAGLQGTGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
+ Y +KQ ++C++VA D+YRPAAIDQL LG+Q++VPV+ GT P DIA QG +AK+
Sbjct: 121 SLYLRKQERTCLMVATDIYRPAAIDQLKTLGEQIEVPVFELGTQANPVDIATQGVAKAKE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
ID VI+DTAGRLQID+ MM EL VK+ +NP + LLVVDAMTGQEAA L TF+ +IG
Sbjct: 181 MGIDTVIIDTAGRLQIDEEMMLELARVKKAVNPDDTLLVVDAMTGQEAANLTRTFHEQIG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
+TGAILTK+DGD+RGGAALSV+++SG+PIK VG GE++E L+PFYPDRMA RIL MGDVL
Sbjct: 241 VTGAILTKMDGDTRGGAALSVRQISGQPIKFVGVGEKVEALQPFYPDRMASRILSMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQE + D E +Q KI+ AKFDFNDFLKQ R + MGS ++ MIPGM K++
Sbjct: 301 TLVEKAQEEIDLSDVEQMQSKILEAKFDFNDFLKQMRLMKNMGSFGSILKMIPGMNKLSS 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
I + E L+ E +I +MT EER+ P+LLA+SP RR+R+A+ SG E + ++ NF
Sbjct: 361 TDIEKGEGELKRTEAMISSMTLEERKNPDLLAKSPNRRRRIAKGSGHPEAEVSKLIKNFT 420
Query: 487 KYTTIM 492
+ +M
Sbjct: 421 RMRGMM 426
>gb|AAQ00404.1| Signal recognition particle GTPase [Prochlorococcus marinus subsp.
marinus str. CCMP1375] gi|33240809|ref|NP_875751.1|
Signal recognition particle GTPase [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 485
Score = 447 bits (1150), Expect = e-124
Identities = 225/426 (52%), Positives = 312/426 (72%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF +L+ E A L+GE +++DN+ ++ +RRALLEADVSL VV++FVQ V D+A+
Sbjct: 1 MFDELSARFEDAVKGLRGENKISEDNVDIALKQVRRALLEADVSLSVVKQFVQEVRDKAI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V RGV P Q+ +++VH ELV++MGG S L + P+VIL+AGLQG GKTT AKL
Sbjct: 61 GAEVVRGVNPGQKFIEVVHQELVEVMGGANSPLADSTKKPSVILMAGLQGAGKTTAAAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
Y K +G ++VA DVYRPAAIDQL LGKQ++V V++ G + KP DIA G ++A++
Sbjct: 121 GLYLKDKGLKPLMVAADVYRPAAIDQLNTLGKQINVEVFSLGKESKPEDIAASGLKKAQE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ D +IVDTAGRLQID+ MM+E+ ++ ++P EVLLVVD+M GQEAA L F+ ++G
Sbjct: 181 EDFDTLIVDTAGRLQIDEEMMNEMVRIRSAVDPDEVLLVVDSMIGQEAADLTRAFHEKVG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGA+LTKLDGDSRGGAALS+++VSG+PIK +G GE++E L+PF+P+RMAGRILGMGDVL
Sbjct: 241 ITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMAGRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQ+ ++ DAE +Q+K A FDF+DF+KQ R + +MGS+ ++ MIPGM K+
Sbjct: 301 TLVEKAQKEVEIADAEQMQRKFQEATFDFSDFVKQMRLIKRMGSLGGLMKMIPGMNKIDD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
++ E L+ +E +I +MT E+ +PELLA P RRKRVA SG T + D +L++F+
Sbjct: 361 GMLKSGEDQLKRIEAMIGSMTNAEQTQPELLAAQPSRRKRVAFGSGHTPVEVDKVLADFQ 420
Query: 487 KYTTIM 492
K +M
Sbjct: 421 KMRGLM 426
>emb|CAE08133.1| signal recognition particle protein (SRP54) [Synechococcus sp. WH
8102] gi|33866152|ref|NP_897711.1| signal recognition
particle protein (SRP54) [Synechococcus sp. WH 8102]
Length = 487
Score = 445 bits (1144), Expect = e-123
Identities = 219/426 (51%), Positives = 310/426 (72%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF +L+ E A LKG++ ++ N+ ++D+RRALLEADVSLPVV+ FV V ++AV
Sbjct: 1 MFDELSARFEDAVKGLKGQDKISDTNVEVALKDVRRALLEADVSLPVVKDFVADVREKAV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V RGV PDQ+ +++VH++LV++MGG+ + L A PTV+L+AGLQG GKTT AKL
Sbjct: 61 GAEVVRGVSPDQKFIQVVHEQLVEVMGGDNAPLAKAAEAPTVVLMAGLQGAGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
+ K QG+ ++V DVYRPAAI+QL LG Q+ V V++ GT+ KP +IA G +AK+
Sbjct: 121 GLHLKDQGRRALMVGADVYRPAAIEQLKTLGGQIGVEVFSLGTEAKPEEIAAAGLAKAKE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ D ++VDTAGRLQID MM+E+ ++ + P EVLLVVD+M GQEAA L F+ ++G
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRTAVQPDEVLLVVDSMIGQEAAELTRAFHDQVG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITGA+LTKLDGDSRGGAALS+++VSG+PIK +G GE++E L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGAVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQ+ ++ D E +QKK+ A FDF+DF++Q R + +MGS+ ++ MIPGM K+
Sbjct: 301 TLVEKAQKEVELADVEKMQKKLQEATFDFSDFVQQMRLIKRMGSLGGLMKMIPGMNKLDD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
+++ E+ L+ +E +I +MTP+ERE P+LLA P RR+R+A SG D +L++F+
Sbjct: 361 GILKQGEQQLKRIEAMIGSMTPKERENPDLLAGQPSRRRRIAAGSGHQPADVDKVLADFQ 420
Query: 487 KYTTIM 492
K M
Sbjct: 421 KMRGFM 426
>emb|CAE20524.1| signal recognition particle protein (SRP54) [Prochlorococcus
marinus str. MIT 9313] gi|33862622|ref|NP_894182.1|
signal recognition particle protein (SRP54)
[Prochlorococcus marinus str. MIT 9313]
Length = 497
Score = 439 bits (1128), Expect = e-121
Identities = 217/426 (50%), Positives = 309/426 (71%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF +L+ E A L+G+ ++ N+ + ++ +RRALL ADVSL VVR FV+ V +AV
Sbjct: 1 MFEELSARFEDAVKGLRGQAKISDTNVEDALKQVRRALLGADVSLEVVREFVEEVRQKAV 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V RGV PDQ+ V++VH +LV++MGG+ + + A+ PTV+L+AGLQG GKTT AKL
Sbjct: 61 GAEVVRGVTPDQKFVQVVHQQLVEVMGGDNAPMAEAEDSPTVVLMAGLQGAGKTTATAKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKK 246
+ K QG+ ++VA DVYRPAAIDQL LG+Q+ V V++ G DVKP +IA G +A++
Sbjct: 121 GLHLKDQGQRPLMVAADVYRPAAIDQLRTLGEQIGVDVFSLGDDVKPEEIAAAGLAKARE 180
Query: 247 KKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIG 306
+ D ++VDTAGRLQID MM+E+ ++ + P EVLLVVD+M GQEAA L F+ ++G
Sbjct: 181 EGFDTLLVDTAGRLQIDTEMMEEMVRIRSAVEPDEVLLVVDSMIGQEAAELTRAFHDKVG 240
Query: 307 ITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVL 366
ITG++LTKLDGDSRGGAALS+++VSG+PIK +G GE++E L+PF+P+RMA RILGMGDVL
Sbjct: 241 ITGSVLTKLDGDSRGGAALSIRKVSGQPIKFIGTGEKVEALQPFHPERMASRILGMGDVL 300
Query: 367 SFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTP 426
+ VEKAQ+ ++ D E +QKK+ A FDF+DFL+Q R + +MGS+ +I M+PGM K+
Sbjct: 301 TLVEKAQKEVELADVEKMQKKLQEASFDFSDFLQQMRLIKRMGSLGGLIKMMPGMNKLDD 360
Query: 427 AQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNFE 486
+++ E+ L+ +E +I +MT +ER +PELLA P RR+R+A SG + D +L++F+
Sbjct: 361 GMLKQGEQQLKRIEAMIGSMTADERNQPELLASQPSRRRRIAGGSGHSPADVDKVLADFQ 420
Query: 487 KYTTIM 492
K M
Sbjct: 421 KMRGFM 426
>ref|NP_893403.1| signal recognition particle protein (SRP54) [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33640210|emb|CAE19745.1| signal recognition particle
protein (SRP54) [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 498
Score = 430 bits (1105), Expect = e-119
Identities = 217/427 (50%), Positives = 308/427 (71%), Gaps = 1/427 (0%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF +L++ E A L+GE ++++NI + ++ +++ALL+ADVSL VV+ FV V D+A+
Sbjct: 1 MFDELSSRFEDAVKGLRGEAKISENNIDDALKQVKKALLDADVSLSVVKEFVSDVKDKAI 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKL 186
G V RGV P Q+ +++V+ EL+ +MG E S L +T PTVIL+AGLQG GKTT KL
Sbjct: 61 GEEVVRGVNPGQKFIEVVNKELINIMGNENSPLNKKETTPTVILMAGLQGAGKTTATGKL 120
Query: 187 ANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGT-DVKPSDIAKQGFEEAK 245
Y K++ + +LVA D+YRPAA++QL +G Q D+ V++A + KP +IA+ A
Sbjct: 121 GLYLKEKEEKVLLVAADIYRPAAVEQLKTIGNQYDLEVFSAKEKNSKPEEIARDALSYAN 180
Query: 246 KKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEI 305
ID +IVDTAGRLQID++MM E+ +K+V P EVLLVVD+M GQEAA L +F+ ++
Sbjct: 181 ANNIDTLIVDTAGRLQIDESMMGEMVRIKQVTKPDEVLLVVDSMIGQEAADLTKSFHEKV 240
Query: 306 GITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDV 365
GITGAILTKLDGDSRGGAALS++++SGKPIK +G GE++E L+PF+P+RMA RILGMGDV
Sbjct: 241 GITGAILTKLDGDSRGGAALSIRKISGKPIKFIGTGEKIEALQPFHPERMASRILGMGDV 300
Query: 366 LSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVT 425
L+ VEKAQ+ ++ DAE +QKK+ A FDFNDF+KQ R + +MGS+ +I +IPGM K+
Sbjct: 301 LTLVEKAQKEVELADAEVMQKKLQEATFDFNDFVKQMRLMKRMGSLGGLIKLIPGMNKID 360
Query: 426 PAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSNF 485
I+ E L+ +E +I +MT EE++KPE+LA P RR+R+AQ SG + D +L++F
Sbjct: 361 DGMIKNGEEQLKKIESMISSMTLEEKQKPEVLAAQPSRRQRIAQGSGYQAKDVDKVLADF 420
Query: 486 EKYTTIM 492
++ M
Sbjct: 421 QRMRGFM 427
>ref|NP_925585.1| signal recognition particle protein SRP54 [Gloeobacter violaceus
PCC 7421] gi|35213208|dbj|BAC90580.1| signal recognition
particle protein SRP54 [Gloeobacter violaceus PCC 7421]
Length = 497
Score = 429 bits (1104), Expect = e-119
Identities = 226/428 (52%), Positives = 302/428 (69%), Gaps = 4/428 (0%)
Query: 67 MFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQSVTDQAV 126
MF L+ LE AW KL+G++ +T+ NI E +R++RRALLEADV+ V + FV V D A+
Sbjct: 1 MFESLSEKLEGAWRKLRGQDRITEGNIDEALREVRRALLEADVNFQVAKEFVADVRDDAL 60
Query: 127 GVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTF--AKTGPTVILLAGLQGVGKTTVCA 184
G V GV PDQQ +KIVHD+LV LMG + L AK P V+L+AGLQG GKTT A
Sbjct: 61 GAEVVSGVTPDQQFIKIVHDQLVALMGEQNVPLAEPRAKGRPAVVLMAGLQGTGKTTASA 120
Query: 185 KLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEA 244
KLA Y +K G+ +L A DVYRPAAIDQL LG Q+ VPV+T G + P DIA+ E A
Sbjct: 121 KLALYLQKNGQKPLLAAADVYRPAAIDQLQTLGGQIQVPVFTLGKEADPVDIARASLERA 180
Query: 245 KKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLE 304
+ DV+IVDTAGRL ID AMM EL+ +K ++P E+LLVVDAMTGQEAA L F+
Sbjct: 181 IADRHDVLIVDTAGRLSIDDAMMAELERIKAAIDPEEILLVVDAMTGQEAANLTRAFHDR 240
Query: 305 IGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGD 364
+GITGAILTKLDGD+RGGAALSV+++SG+PIK VG GE++E L+PFYP+RMA RILGMGD
Sbjct: 241 LGITGAILTKLDGDTRGGAALSVRKISGQPIKFVGVGEKVEALQPFYPERMASRILGMGD 300
Query: 365 VLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKV 424
VL+ VEKAQE + DA +++++++ +FDF F+KQ R + MG + V+ MIPGM K+
Sbjct: 301 VLTLVEKAQEEIDFADAAKMEQQLLTGQFDFESFIKQMRMIKNMGPLGGVLKMIPGMNKI 360
Query: 425 TPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQTDAILSN 484
+ QIR+ E L+ E +I +MT +ER P+L+ S R++R+++ SG + + +L++
Sbjct: 361 SDDQIRQGEVQLKKAEAMIGSMTTQERRNPDLINLS--RKRRISKGSGVSLEDVGKLLND 418
Query: 485 FEKYTTIM 492
F K +M
Sbjct: 419 FGKMRQMM 426
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 888,341,394
Number of Sequences: 2540612
Number of extensions: 36084985
Number of successful extensions: 123281
Number of sequences better than 10.0: 1097
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 226
Number of HSP's that attempted gapping in prelim test: 120476
Number of HSP's gapped (non-prelim): 1233
length of query: 573
length of database: 863,360,394
effective HSP length: 133
effective length of query: 440
effective length of database: 525,458,998
effective search space: 231201959120
effective search space used: 231201959120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)
Medicago: description of AC140848.2