Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.5 - phase: 0 /pseudo
         (194 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAW41048.1| hypothetical protein CNA04750 [Cryptococcus neofo...    39  0.10
gb|EAL23342.1| hypothetical protein CNBA4580 [Cryptococcus neofo...    39  0.10
gb|AAB94189.2| Hypothetical protein W03F8.2 [Caenorhabditis eleg...    36  0.67
gb|AAK82166.1| 305L [Chilo iridescent virus] gi|15079017|ref|NP_...    36  0.67
ref|NP_701782.1| hypothetical protein PFL2110c [Plasmodium falci...    35  1.1
ref|NP_070947.1| hypothetical protein AF2122 [Archaeoglobus fulg...    35  1.1
gb|AAG34740.1| similar to j-domain of DnaJ [Mycoplasma pneumonia...    35  1.5
gb|AAH53260.1| Hypothetical protein LOC393349 [Danio rerio] gi|4...    34  2.0
ref|NP_757638.1| hypothetical protein MYPE2520 [Mycoplasma penet...    34  2.6
emb|CAH15389.1| hypothetical protein [Legionella pneumophila str...    33  3.3
ref|ZP_00106036.1| COG1205: Distinct helicase family with a uniq...    33  3.3
gb|AAC60011.1| phospholipase C beta [Meleagris gallopavo] gi|213...    33  3.3
ref|NP_228481.1| hypothetical protein TM0672 [Thermotoga maritim...    33  4.4
emb|CAF29918.1| Conserved Hypothetical Protein [Methanococcus ma...    33  4.4
ref|NP_500739.1| predicted CDS, protein kinase and SH2 motif fam...    33  4.4
ref|NP_197352.1| hypothetical protein [Arabidopsis thaliana]           33  5.7
dbj|BAB88834.1| axonemal p83.9 [Ciona intestinalis]                    33  5.7
ref|ZP_00472243.1| hypothetical protein CsalDRAFT_2418 [Chromoha...    32  7.5
gb|AAH76809.1| MGC83764 protein [Xenopus laevis]                       32  7.5
gb|AAO52105.1| similar to Plasmodium falciparum. Phosphatidylino...    32  7.5

>gb|AAW41048.1| hypothetical protein CNA04750 [Cryptococcus neoformans var.
           neoformans JEC21] gi|58258909|ref|XP_566867.1|
           hypothetical protein CNA04750 [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 405

 Score = 38.5 bits (88), Expect = 0.10
 Identities = 28/104 (26%), Positives = 44/104 (41%), Gaps = 9/104 (8%)

Query: 33  SPSPSSTLRFQNIVHNSTKN---FEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPD- 88
           SP P S  RF N+  N  +N   F  +      S++ P K  E         +   EP  
Sbjct: 11  SPLPKSEHRFGNVNINDNENANAFSNYSLPKSPSANGPEKVQEEQTEEKTKVETETEPSR 70

Query: 89  -----VKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLD 127
                  E++D+   +QV  S    SH++L P  + SD ++K +
Sbjct: 71  EEINGASESDDEAQVAQVQSSPAQESHQWLSPQVEASDQEEKAE 114


>gb|EAL23342.1| hypothetical protein CNBA4580 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 485

 Score = 38.5 bits (88), Expect = 0.10
 Identities = 28/104 (26%), Positives = 44/104 (41%), Gaps = 9/104 (8%)

Query: 33  SPSPSSTLRFQNIVHNSTKN---FEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPD- 88
           SP P S  RF N+  N  +N   F  +      S++ P K  E         +   EP  
Sbjct: 11  SPLPKSEHRFGNVNINDNENANAFSNYSLPKSPSANGPEKVQEEQTEEKTKVETETEPSR 70

Query: 89  -----VKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLD 127
                  E++D+   +QV  S    SH++L P  + SD ++K +
Sbjct: 71  EEINGASESDDEAQVAQVQSSPAQESHQWLSPQVEASDQEEKAE 114


>gb|AAB94189.2| Hypothetical protein W03F8.2 [Caenorhabditis elegans]
          Length = 448

 Score = 35.8 bits (81), Expect = 0.67
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 10/149 (6%)

Query: 11  IYMTLSHIFTL-TSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTK 69
           ++  + H+  L T FLL  L + +      LRF  I+     NF+++   ++  SS+PTK
Sbjct: 35  VFQKIVHLVHLQTPFLLKALRILTFLSHRGLRFSEII-----NFDLWFFFIKYGSSEPTK 89

Query: 70  QHEPNVNLPVNTQFMEEP--DVKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLD 127
           Q + +    V  +   E   DVK  E  + K +   +  NS          +   +KK +
Sbjct: 90  QEKEDDKKEVEEKKENEKPVDVKVEEKVMVKVEATQNTDNSQELKAPEEKPKKKKKKKSN 149

Query: 128 AVFPWNEAQLPLIFSKGPYDLSFLKSKFR 156
            +   +  ++ ++  K   D S L+ K R
Sbjct: 150 IIATASVEKISIVPEK--EDFSILEKKLR 176


>gb|AAK82166.1| 305L [Chilo iridescent virus] gi|15079017|ref|NP_149768.1| 305L
           [Invertebrate iridescent virus 6]
          Length = 208

 Score = 35.8 bits (81), Expect = 0.67
 Identities = 27/88 (30%), Positives = 44/88 (49%), Gaps = 11/88 (12%)

Query: 4   ICPISKAIYMTLSHIFTLTSFLLSLLLLFSP------SPSSTLRFQNIVHNSTKNFEIFM 57
           IC +++      S +     FL++LL++FSP      SP S+L F  +V  +  NF  F 
Sbjct: 109 ICKLARFPKSFCSSVNFPVRFLVTLLVVFSPFVTMSFSPFSSLTFLILVFGTFFNFVSFR 168

Query: 58  ARVEGSSSQPTKQHEPNVNLPVNTQFME 85
            +V  SS++ T     +  LP  + F+E
Sbjct: 169 LKVFDSSTRST-----STKLPFTSSFLE 191


>ref|NP_701782.1| hypothetical protein PFL2110c [Plasmodium falciparum 3D7]
           gi|23496955|gb|AAN36506.1| hypothetical protein PFL2110c
           [Plasmodium falciparum 3D7]
          Length = 1846

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 16/91 (17%)

Query: 41  RFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPDVKEAEDKIWKSQ 100
           +F+NIV+ S  N E    + EG +++  + ++PN      TQ   EP + EA++K +  +
Sbjct: 5   KFKNIVNLSNSNTE----KEEGKNAEINENNDPN------TQLAHEPSIVEADEKTFFDE 54

Query: 101 VIISCPNSSHEYLGPLSD------ESDDQKK 125
           ++ +   +  E+L  L +      +++D KK
Sbjct: 55  MLGAPQYTYDEFLQVLKNPIEERGDTEDMKK 85


>ref|NP_070947.1| hypothetical protein AF2122 [Archaeoglobus fulgidus DSM 4304]
           gi|2648426|gb|AAB89149.1| A. fulgidus predicted coding
           region AF2122 [Archaeoglobus fulgidus DSM 4304]
           gi|7483766|pir||B69515 hypothetical protein AF2122 -
           Archaeoglobus fulgidus gi|14424277|sp|O28158|YL22_ARCFU
           Hypothetical protein AF2122
          Length = 142

 Score = 35.0 bits (79), Expect = 1.1
 Identities = 23/82 (28%), Positives = 38/82 (46%)

Query: 11  IYMTLSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQ 70
           IY  LS +   T FL ++L + + + ++   F +++H  ++N   F   VEG S      
Sbjct: 44  IYGQLSLLLWGTKFLATILGVTANNATAMANFTDVLHTLSENSYHFFGTVEGESGMAYIA 103

Query: 71  HEPNVNLPVNTQFMEEPDVKEA 92
               + L  N Q  E+  VK A
Sbjct: 104 KHSYIELSQNQQLSEDMAVKFA 125


>gb|AAG34740.1| similar to j-domain of DnaJ [Mycoplasma pneumoniae M129]
           gi|2494157|sp|Q50312|DNJL_MYCPN DnaJ-like protein MG002
           homolog gi|1209516|gb|AAC43644.1| DnaJ protein homolog;
           similar to Xdj1 protein from yeast
           gi|13507741|ref|NP_109690.1| similar to j-domain of DnaJ
           [Mycoplasma pneumoniae M129]
          Length = 309

 Score = 34.7 bits (78), Expect = 1.5
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 87  PDV-KEAED---KIWKSQVIISCPNSSHEYLGPL--SDESDDQKKLDAVFPWNEAQLPLI 140
           PD+ K+  D   KI  +  ++S      EY   L  S+  D  K+LD    W+E  +  +
Sbjct: 31  PDINKQGADTFVKINNAYAVLSDTTQKAEYDAMLRFSEFEDRVKRLDFSIKWHEQFMEEL 90

Query: 141 FSKGPYDLSFLKSKFRTEPKIENNEKYLDWLDK 173
                +D  F++++  T+P   NN KY  +LDK
Sbjct: 91  QFHHNWDFDFIRNREYTQPTPTNN-KYSSFLDK 122


>gb|AAH53260.1| Hypothetical protein LOC393349 [Danio rerio]
           gi|41055205|ref|NP_956672.1| hypothetical protein
           LOC393349 [Danio rerio]
          Length = 215

 Score = 34.3 bits (77), Expect = 2.0
 Identities = 33/132 (25%), Positives = 51/132 (38%), Gaps = 11/132 (8%)

Query: 14  TLSHIFTLTSFLLSLLLLFSPSPSSTLRF------QNIVHNSTKNFEIFMARVEGSSSQP 67
           +L+HI      +    L     P + LR       Q +     + FEI   R++G     
Sbjct: 39  SLNHILVAVESVFVKRLCPGRDPPAELRLTARESTQKLRQFLQERFEIMFQRMKGMLIDR 98

Query: 68  TKQHEPNVNLPVNTQFMEEPDVKEAEDKIWKS-----QVIISCPNSSHEYLGPLSDESDD 122
                 NV LP +    + P+ KE   K+ +S     Q   +   S    L  L ++ + 
Sbjct: 99  MLSIPQNVLLPEDQMHQKYPEGKEELTKLQESIAKLLQAYEAEVCSKQALLAELEEQKET 158

Query: 123 QKKLDAVFPWNE 134
           QK+LD V  W E
Sbjct: 159 QKQLDEVLRWIE 170


>ref|NP_757638.1| hypothetical protein MYPE2520 [Mycoplasma penetrans HF-2]
           gi|26453711|dbj|BAC44042.1| conserved hypothetical
           protein [Mycoplasma penetrans HF-2]
          Length = 682

 Score = 33.9 bits (76), Expect = 2.6
 Identities = 19/59 (32%), Positives = 29/59 (48%), Gaps = 2/59 (3%)

Query: 36  PSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPDVKEAED 94
           P S      I+ N  K+FEI   +V  +S    KQH+PN    +N + +   D+K+  D
Sbjct: 208 PLSLDNLLTIISNGNKDFEILSKKVNKNSKHNVKQHKPNKK--INYEEITIQDIKDNWD 264


>emb|CAH15389.1| hypothetical protein [Legionella pneumophila str. Lens]
           gi|54294086|ref|YP_126501.1| hypothetical protein
           lpl1150 [Legionella pneumophila str. Lens]
          Length = 157

 Score = 33.5 bits (75), Expect = 3.3
 Identities = 30/110 (27%), Positives = 44/110 (39%)

Query: 16  SHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNV 75
           S I TL  F  + L++  P     L   +I  + T  F       E  S    +    NV
Sbjct: 36  SSILTLFGFTPNALVMPCPHGHGHLHIMDIQEDDTLVFATMNGSPEIMSLLALQFLMQNV 95

Query: 76  NLPVNTQFMEEPDVKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKK 125
           NL ++     E D KEAE+K  +        N   E     S ES++++K
Sbjct: 96  NLNLDDMLAAETDAKEAEEKEEQELSSSESVNEEKEESEFSSSESENEEK 145


>ref|ZP_00106036.1| COG1205: Distinct helicase family with a unique C-terminal domain
           including a metal-binding cysteine cluster [Nostoc
           punctiforme PCC 73102]
          Length = 759

 Score = 33.5 bits (75), Expect = 3.3
 Identities = 46/205 (22%), Positives = 82/205 (39%), Gaps = 42/205 (20%)

Query: 7   ISKAIYMTLSHIFTLTSFLLSLLLLFS-PSPSSTLRFQNIVHNSTKNFEIFMARVEGSSS 65
           +    Y+  SHIF        ++LL + P P+  L  QN+     K     +A ++G S 
Sbjct: 197 VGMLFYLAYSHIFRFFENGRKVVLLTATPEPACELALQNLKQAGVK-----IAIIDGESG 251

Query: 66  QPT---KQHEPNVNL----------------PVNTQFMEEPD-----VKEAEDKIWKSQV 101
                  Q   N+ L                 V  +F+E+PD     + ++ D I +   
Sbjct: 252 NTNLLPSQTAVNLELRPKPDSKEEWLAELAAEVIQRFLEKPDENGAVILDSLDNINRLSD 311

Query: 102 IISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEAQLPLIFSKGPYDLSFLKSKFRTEPKI 161
           ++     S+ Y+G ++  +  Q +  A+      Q  +I +    D+ F   +   EPK 
Sbjct: 312 LLRQQGLSN-YIGRITGPAPKQDRQRAM------QCQIILATSTVDVGFNFER-HPEPKR 363

Query: 162 ENNEKYLDWLDKVEKIKGPFWKEMG 186
           +N    LDWL    + +  FW+ +G
Sbjct: 364 QN----LDWLIFSARDRAAFWQRIG 384


>gb|AAC60011.1| phospholipase C beta [Meleagris gallopavo] gi|2134446|pir||S68251
           phospholipase C, inositol-lipid specific (EC 3.1.4.-)
           isoform beta - turkey
          Length = 1211

 Score = 33.5 bits (75), Expect = 3.3
 Identities = 25/94 (26%), Positives = 40/94 (41%), Gaps = 12/94 (12%)

Query: 34  PSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPDVKEAE 93
           PSP   L  + ++ N  K F   ++    SS +  K  EP +        +E+P   +AE
Sbjct: 449 PSPKDLLG-KILIKNKKKQF---VSEKRQSSMKKGKNVEPEI--------IEQPAFTDAE 496

Query: 94  DKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLD 127
           D +W   V    P    + LG L +E   + + D
Sbjct: 497 DTVWAGDVAEEEPEEEDDQLGNLDEEEIKKMQSD 530


>ref|NP_228481.1| hypothetical protein TM0672 [Thermotoga maritima MSB8]
           gi|4981196|gb|AAD35756.1| hypothetical protein TM0672
           [Thermotoga maritima MSB8] gi|7462692|pir||G72346
           hypothetical protein - Thermotoga maritima (strain MSB8)
          Length = 647

 Score = 33.1 bits (74), Expect = 4.4
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 5/104 (4%)

Query: 89  VKEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVF-----PWNEAQLPLIFSK 143
           VK++E+K   SQ+     +SS  YL   +  S+  KKL + F     P  +++   +F +
Sbjct: 199 VKDSENKESASQISFEKKHSSIPYLESETSRSESNKKLSSSFRTPAEPSLKSESTKVFKE 258

Query: 144 GPYDLSFLKSKFRTEPKIENNEKYLDWLDKVEKIKGPFWKEMGV 187
            P      ++K      I N  + L       K+   F K  G+
Sbjct: 259 QPISAQDKETKHSARQPIFNETRSLPQNSDAAKLSRDFEKTTGI 302


>emb|CAF29918.1| Conserved Hypothetical Protein [Methanococcus maripaludis S2]
           gi|45357925|ref|NP_987482.1| hypothetical protein
           MMP0362 [Methanococcus maripaludis S2]
          Length = 433

 Score = 33.1 bits (74), Expect = 4.4
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 15/106 (14%)

Query: 15  LSHIFTLTSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPN 74
           L  +F +T  L  LLL FS  P    R QN        FE+    VE  S +     + N
Sbjct: 25  LPTLFGITILLFILLLKFSFDPVFETRLQN------SEFEV----VENESFEIKLNIKNN 74

Query: 75  VNLPVNTQFMEEPDVKEAEDKIWKSQVIISCPNSSHEYLGPLSDES 120
              P+N +  E  D     +  W+S  ++  P  S E L  L+ +S
Sbjct: 75  SKCPLNFKIKENND-----NFTWESNNVLILPKKSAEILVSLTPKS 115


>ref|NP_500739.1| predicted CDS, protein kinase and SH2 motif family member (4F957)
           [Caenorhabditis elegans] gi|7508905|pir||T15104
           hypothetical protein W03F8.2 - Caenorhabditis elegans
          Length = 617

 Score = 33.1 bits (74), Expect = 4.4
 Identities = 36/126 (28%), Positives = 58/126 (45%), Gaps = 17/126 (13%)

Query: 11  IYMTLSHIFTL-TSFLLSLLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTK 69
           ++  + H+  L T FLL  L + +      LRF  I+     NF+++   ++  SS+PTK
Sbjct: 35  VFQKIVHLVHLQTPFLLKALRILTFLSHRGLRFSEII-----NFDLWFFFIKYGSSEPTK 89

Query: 70  QHEPNVNLPVNTQFMEEP--DVKEAEDKIWKSQVIISCPNSSH--EYLGP---LSDESDD 122
           Q + +    V  +   E   DVK  E    K  V +    SSH   YL P    +  +D+
Sbjct: 90  QEKEDDKKEVEEKKENEKPVDVKVEE----KVMVKVEVRASSHFTVYLCPDLDATQNTDN 145

Query: 123 QKKLDA 128
            ++L A
Sbjct: 146 SQELKA 151


>ref|NP_197352.1| hypothetical protein [Arabidopsis thaliana]
          Length = 702

 Score = 32.7 bits (73), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 167 YLDWLDKVEKIKGPFWKEMGVFDLIQLS 194
           +L WL K++ +  P WK+ G+F+ I+ S
Sbjct: 60  FLSWLGKMQALYEPIWKKAGIFEAIKAS 87


>dbj|BAB88834.1| axonemal p83.9 [Ciona intestinalis]
          Length = 737

 Score = 32.7 bits (73), Expect = 5.7
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 59  RVEGSSSQ-PTKQHEPNVNL----PVNTQFMEEPDVK--EAEDKIWKSQVI 102
           R EGS S+ P +Q +P + L    P N  F EEP V   ++ DK WK+  I
Sbjct: 436 RDEGSPSKTPLEQQQPPIGLTFALPSNVMFFEEPQVASWDSSDKHWKTSGI 486


>ref|ZP_00472243.1| hypothetical protein CsalDRAFT_2418 [Chromohalobacter salexigens DSM
            3043] gi|67520608|gb|EAM24551.1| hypothetical protein
            CsalDRAFT_2418 [Chromohalobacter salexigens DSM 3043]
          Length = 1269

 Score = 32.3 bits (72), Expect = 7.5
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 6/64 (9%)

Query: 119  ESDDQKKLDAVFPWNEAQL-----PLIFSKGPYDLSFLKSKFR-TEPKIENNEKYLDWLD 172
            E  D+K + A+FP     L     P + ++ PY+L  + +    TEP++ ++ +YL  +D
Sbjct: 1205 EISDEKPITALFPETTLDLMNRVTPQVLTRPPYELPKVLALIEETEPELISDPRYLRLID 1264

Query: 173  KVEK 176
             VE+
Sbjct: 1265 LVER 1268


>gb|AAH76809.1| MGC83764 protein [Xenopus laevis]
          Length = 562

 Score = 32.3 bits (72), Expect = 7.5
 Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 3/131 (2%)

Query: 30  LLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEPNVNLPVNTQFMEEPDV 89
           +  SPS    L     +  S+   ++   +V GS+S P+ Q +  ++   +      P  
Sbjct: 95  ITLSPSQQKLLGVPYSLAQSSPQRDLIPNKVPGSTSPPSMQGQNVLSYSPSRSPSSSPKF 154

Query: 90  KEAEDKIWKSQVIISCPNSSHEYLGPLSDESDDQKKLDAVFPWNEA-QLPLIFSKGPYDL 148
             +    +  Q+    PNS   +   +S  S+   K+ +  P + + Q P   + GP + 
Sbjct: 155 SPSCISGYSPQIQAMLPNSGSPFTSVVSYSSNSFPKIISYSPSSSSPQYP--SNLGPVES 212

Query: 149 SFLKSKFRTEP 159
             L+S++R+ P
Sbjct: 213 GGLRSRYRSSP 223


>gb|AAO52105.1| similar to Plasmodium falciparum. Phosphatidylinositol 4-kinase,
           putative (EC 2.7.1.67) [Dictyostelium discoideum]
          Length = 514

 Score = 32.3 bits (72), Expect = 7.5
 Identities = 28/117 (23%), Positives = 53/117 (44%), Gaps = 13/117 (11%)

Query: 15  LSHIFTLTSFLLS-LLLLFSPSPSSTLRFQNIVHNSTKNFEIFMARVEGSSSQPTKQHEP 73
           +++  T+  F  + +LL+F+   SS         +S    E F  ++  SSS  T  +  
Sbjct: 378 INYFITVKQFFSNQILLIFTNCKSSK--------DSVDFIEFFKKKLLSSSSNNTNNNNN 429

Query: 74  NVNLPVNTQFMEEPDVKEAEDKIWKSQVIISCP----NSSHEYLGPLSDESDDQKKL 126
           N+N+ +   FM E  V + ++ I K +   + P    N S+ + G   D+ +   +L
Sbjct: 430 NINVEIPPIFMYEHHVNQIKEYILKFKNFPASPFKKNNLSNMFNGLTVDQQNQMDRL 486


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 341,838,373
Number of Sequences: 2540612
Number of extensions: 14263291
Number of successful extensions: 37887
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 37884
Number of HSP's gapped (non-prelim): 29
length of query: 194
length of database: 863,360,394
effective HSP length: 121
effective length of query: 73
effective length of database: 555,946,342
effective search space: 40584082966
effective search space used: 40584082966
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 71 (32.0 bits)


Medicago: description of AC140773.5