Medicago
BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC140773.4 + phase: 0 /pseudo
         (1194 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAP53484.1| putative retroelement [Oryza sativa (japonica cul...   106  5e-21
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati...   105  1e-20
gb|AAQ56307.1| putative gag-pol precursor [Oryza sativa (japonic...   104  2e-20
emb|CAE05186.2| OSJNBa0013A04.23 [Oryza sativa (japonica cultiva...   104  2e-20
ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultiv...   104  2e-20
emb|CAE03297.2| OSJNBb0046P18.13 [Oryza sativa (japonica cultiva...   103  3e-20
ref|XP_471564.1| OSJNBb0032D24.5 [Oryza sativa (japonica cultiva...   103  3e-20
ref|XP_474664.1| OSJNBa0052P16.15 [Oryza sativa (japonica cultiv...   103  3e-20
gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativ...   103  3e-20
ref|NP_910301.1| ESTs C97394(C60113),AU075824(R0165),D38985(R016...   103  5e-20
gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cul...   102  6e-20
gb|AAP52537.1| putative gag-pol precursor [Oryza sativa (japonic...   102  6e-20
emb|CAD40096.1| OSJNBb0012A12.6 [Oryza sativa (japonica cultivar...   102  6e-20
ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (j...   102  6e-20
gb|AAT93877.1| putative polyprotein [Oryza sativa (japonica cult...   102  6e-20
gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica ...   102  8e-20
emb|CAE05825.1| OSJNBa0028M15.17 [Oryza sativa (japonica cultiva...   102  8e-20
gb|AAX92831.1| retrotransposon protein, putative, unclassified [...   102  1e-19
emb|CAE76044.1| B1248C03.3 [Oryza sativa (japonica cultivar-grou...   102  1e-19
gb|AAX96581.1| retrotransposon protein, putative, unclassified [...   101  1e-19

>gb|AAP53484.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
           gi|37533790|ref|NP_921197.1| putative retroelement
           [Oryza sativa (japonica cultivar-group)]
           gi|21672097|gb|AAM74459.1| Putative retroelement [Oryza
           sativa (japonica cultivar-group)]
          Length = 858

 Score =  106 bits (264), Expect = 5e-21
 Identities = 52/134 (38%), Positives = 85/134 (62%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG+ ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 365 PLYINGYVNGMPLSKIMVDGGAVVNLMPYATFRKLGRNSEDLIKTNMVLKDFGGNPSETK 424

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  ++
Sbjct: 425 GVLNVELTVGSKTVPTTFFVIDRKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIK 483

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 484 IVPADRSVNVASAD 497


>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
           cultivar-group)] gi|37530550|ref|NP_919577.1| putative
           retroelement pol polyprotein [Oryza sativa (japonica
           cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
           retroelement pol polyprotein [Oryza sativa]
          Length = 1580

 Score =  105 bits (261), Expect = 1e-20
 Identities = 51/125 (40%), Positives = 80/125 (63%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   ++
Sbjct: 363 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETM 422

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 423 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQCLIQWQGD-KIE 481

Query: 121 NVEAD 125
            V AD
Sbjct: 482 IVPAD 486



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F+Q+ IIYR GIP+TITTDQG
Sbjct: 1315 FTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQG 1355


>gb|AAQ56307.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
          Length = 1672

 Score =  104 bits (260), Expect = 2e-20
 Identities = 54/133 (40%), Positives = 83/133 (61%), Gaps = 1/133 (0%)

Query: 2   LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
           L+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + G
Sbjct: 656 LYINGYVNGKPMSKMMVDGGAAVNLIPYAKFRKLGRNAEDLIKTNMVLKDFGGNPSETKG 715

Query: 62  AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVEN 121
            + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D L E 
Sbjct: 716 VLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKL-EI 774

Query: 122 VEADQSYFLAEVN 134
           V AD+S  +A  N
Sbjct: 775 VPADRSVNVASAN 787



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 27/41 (65%), Positives = 32/41 (77%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F Q+ +IYRF IP+TITTDQG
Sbjct: 1407 FTKWLEAIPLKKVDSGDAIQFFQEHVIYRFDIPQTITTDQG 1447


>emb|CAE05186.2| OSJNBa0013A04.23 [Oryza sativa (japonica cultivar-group)]
           gi|32483243|emb|CAE02544.1| OSJNBb0069N01.4 [Oryza
           sativa (japonica cultivar-group)]
           gi|50922097|ref|XP_471409.1| OSJNBa0013A04.23 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1235

 Score =  104 bits (259), Expect = 2e-20
 Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+++  +NG  ++K++VDGGA VNL+P +   K+G    DL   NV+L ++ G+   + 
Sbjct: 205 PLYVKGFVNGKPMSKMMVDGGAAVNLMPYATFRKLGKNADDLIKTNVVLNDFGGNPSENK 264

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL +GS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 265 GVLNVELTIGSKTDPTTFFVIDGKGSYSMLLGRDWIHANCCIPSTMHQSLIQWQGD-KIE 323

Query: 121 NVEADQSYFLAEVN 134
            V AD    +   N
Sbjct: 324 IVLADSQLKMESPN 337



 Score = 58.2 bits (139), Expect = 2e-06
 Identities = 22/40 (55%), Positives = 32/40 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQ 1193
            FTKW+EA+PLK V   + I  ++++I+YRFG+P+ ITTDQ
Sbjct: 970  FTKWVEAVPLKKVDSGDAIQLVKEYIVYRFGVPQIITTDQ 1009


>ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultivar-group)]
           gi|38345832|emb|CAE01862.2| OSJNBa0070M12.15 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1685

 Score =  104 bits (259), Expect = 2e-20
 Identities = 52/125 (41%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 739 PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRTTEDLMKTNMVLKDFGGNPSETK 798

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  VE
Sbjct: 799 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KVE 857

Query: 121 NVEAD 125
            V AD
Sbjct: 858 IVPAD 862


>emb|CAE03297.2| OSJNBb0046P18.13 [Oryza sativa (japonica cultivar-group)]
           gi|38344460|emb|CAE04931.2| OSJNBa0017P10.8 [Oryza
           sativa (japonica cultivar-group)]
           gi|50921969|ref|XP_471345.1| OSJNBb0046P18.13 [Oryza
           sativa (japonica cultivar-group)]
          Length = 766

 Score =  103 bits (258), Expect = 3e-20
 Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N+ L ++ G+   + 
Sbjct: 357 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKMNMALKDFGGNPSETK 416

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 417 GVLNVELSVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 475

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 476 IVPADRSVNVASAD 489


>ref|XP_471564.1| OSJNBb0032D24.5 [Oryza sativa (japonica cultivar-group)]
           gi|32487629|emb|CAE04075.1| OSJNBb0032D24.5 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1355

 Score =  103 bits (258), Expect = 3e-20
 Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 352 PLYINGYVNGKPLSKMIVDGGAAVNLMPYATFRKLGRSSDDLIKTNMVLKDFGGNQSETK 411

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+ Q +  W+ D  +E
Sbjct: 412 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMQQCLIQWQGD-KIE 470

Query: 121 NVEADQSYFLAEVN 134
            V AD+S  +A  +
Sbjct: 471 IVPADRSVNIASAD 484



 Score = 65.1 bits (157), Expect = 1e-08
 Identities = 28/41 (68%), Positives = 34/41 (82%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW++AIPLK V   + I F+Q+ IIYRFGIP+TITTDQG
Sbjct: 1241 FTKWVDAIPLKKVDSGDAIQFVQEHIIYRFGIPQTITTDQG 1281


>ref|XP_474664.1| OSJNBa0052P16.15 [Oryza sativa (japonica cultivar-group)]
           gi|21741600|emb|CAD39716.1| OSJNBa0052P16.15 [Oryza
           sativa (japonica cultivar-group)]
          Length = 858

 Score =  103 bits (257), Expect = 3e-20
 Identities = 52/127 (40%), Positives = 79/127 (61%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++ ++VDGGATVNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 567 PLYINGFVNGKPMSNMMVDGGATVNLMPYATFRKLGRNAEDLSKTNMVLKDFGGNPSETK 626

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K  +++LLGR+WIH    +PST+HQ +  W E   +E
Sbjct: 627 GVLNVELTVGSKTIPTTFFVIDGKGCYSLLLGRDWIHANCCIPSTMHQCLIQW-EGNKIE 685

Query: 121 NVEADQS 127
            V AD+S
Sbjct: 686 IVPADRS 692


>gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativa (japonica
           cultivar-group)]
          Length = 1251

 Score =  103 bits (257), Expect = 3e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 700 PLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKTNMVLKDFGGNPSETR 759

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 760 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 818

Query: 121 NVEAD 125
            V AD
Sbjct: 819 IVPAD 823


>ref|NP_910301.1| ESTs C97394(C60113),AU075824(R0165),D38985(R0165) correspond to a
           region of the predicted gene.~Similar to Arabidopsis
           thaliana chromosome II BAC F15O11 genomic sequence;
           putative pol polyprotein with a reverse transcriptase
           domain (AC006446) [Oryza sativa (japonica
           cultivar-group)]
          Length = 793

 Score =  103 bits (256), Expect = 5e-20
 Identities = 52/127 (40%), Positives = 77/127 (59%), Gaps = 1/127 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+++  ++G  V+++LVDGG  VNL+P S   K+G  D++LK  N++L  + G    + 
Sbjct: 45  PLYLKGHVDGKPVSRMLVDGGVAVNLMPYSLFKKLGREDNELKKTNMVLNGFNGEPMEAK 104

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G   +EL VG+    T F +V  + N+NV+LGR WIH    VPST+HQ +  W  D  VE
Sbjct: 105 GIFSVELTVGNNTLPTAFFIVDVQGNYNVILGRCWIHANCCVPSTLHQCLIQWDGDD-VE 163

Query: 121 NVEADQS 127
            V+ D S
Sbjct: 164 IVKTDTS 170


>gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
           gi|37532904|ref|NP_920754.1| putative retroelement
           [Oryza sativa (japonica cultivar-group)]
          Length = 1025

 Score =  102 bits (255), Expect = 6e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 120 PLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 179

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 180 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 238

Query: 121 NVEAD 125
            V AD
Sbjct: 239 IVPAD 243



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 35/69 (50%), Positives = 41/69 (58%), Gaps = 8/69 (11%)

Query: 1134 RGD*TYFIEMI--------QIYLSRDRLFTKWIEAIPLKDVTQEEVISFIQKFIIYRFGI 1185
            RG   Y I MI        Q  L     FTKW+EAIPLK V   + I F+ + IIYRFG+
Sbjct: 903  RGWGIYMIGMINPPSSKGHQFILVATDYFTKWVEAIPLKKVDSGDAIQFVHEHIIYRFGL 962

Query: 1186 PETITTDQG 1194
            P+TITTDQG
Sbjct: 963  PQTITTDQG 971


>gb|AAP52537.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
           gi|62733455|gb|AAX95572.1| Reverse transcriptase
           (RNA-dependent DNA polymerase), putative [Oryza sativa
           (japonica cultivar-group)] gi|37531896|ref|NP_920250.1|
           putative gag-pol precursor [Oryza sativa (japonica
           cultivar-group)] gi|62733437|gb|AAX95554.1| Reverse
           transcriptase (RNA-dependent DNA polymerase), putative
           [Oryza sativa (japonica cultivar-group)]
          Length = 1383

 Score =  102 bits (255), Expect = 6e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 649 PLYINGYVNGKPMSKMIVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 708

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 709 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 767

Query: 121 NVEAD 125
            V AD
Sbjct: 768 IVPAD 772



 Score = 57.8 bits (138), Expect = 2e-06
 Identities = 25/41 (60%), Positives = 30/41 (72%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK     + I F+Q+ IIYRFGI + I TDQG
Sbjct: 1241 FTKWVEAIPLKKANSGDAIQFVQEHIIYRFGISQNIMTDQG 1281


>emb|CAD40096.1| OSJNBb0012A12.6 [Oryza sativa (japonica cultivar-group)]
           gi|38347024|emb|CAE02552.2| OSJNBb0069N01.26 [Oryza
           sativa (japonica cultivar-group)]
           gi|50922141|ref|XP_471431.1| OSJNBb0069N01.26 [Oryza
           sativa (japonica cultivar-group)]
          Length = 243

 Score =  102 bits (255), Expect = 6e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 48  PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNSYDLIKTNMVLKDFGGNPSETK 107

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 108 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 166

Query: 121 NVEAD 125
            V AD
Sbjct: 167 IVPAD 171


>ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (japonica
           cultivar-group)] gi|41393197|gb|AAS01920.1| putative
           reverse transcriptase [Oryza sativa (japonica
           cultivar-group)]
          Length = 1149

 Score =  102 bits (255), Expect = 6e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 662 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLEDFGGNPSETK 721

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 722 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 780

Query: 121 NVEAD 125
            V AD
Sbjct: 781 IVPAD 785


>gb|AAT93877.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1418

 Score =  102 bits (255), Expect = 6e-20
 Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 856 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 915

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 916 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 974

Query: 121 NVEAD 125
            V AD
Sbjct: 975 IVPAD 979


>gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
           gi|37532404|ref|NP_920504.1| putative pol polyprotein
           [Oryza sativa (japonica cultivar-group)]
           gi|19881646|gb|AAM01047.1| putative pol polyprotein
           [Oryza sativa]
          Length = 505

 Score =  102 bits (254), Expect = 8e-20
 Identities = 55/136 (40%), Positives = 82/136 (59%), Gaps = 1/136 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+++  I+G  V+++LVD GA VNL+P S   ++G  D +LK  N+IL  + G    + 
Sbjct: 321 PLYLKGHIDGKPVSRMLVDRGAAVNLMPYSLFKRLGRGDDELKKTNMILNGFNGEPTEAK 380

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G   +EL +G+    TTF +V  + ++NV+LGR WIH    VPST+HQ +  W  D  VE
Sbjct: 381 GIFSVELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQCLIQWDGDD-VE 439

Query: 121 NVEADQSYFLAEVNTI 136
            V+AD S  +A  + I
Sbjct: 440 IVQADTSTEVAMADAI 455


>emb|CAE05825.1| OSJNBa0028M15.17 [Oryza sativa (japonica cultivar-group)]
           gi|50930957|ref|XP_475006.1| OSJNBa0028M15.17 [Oryza
           sativa (japonica cultivar-group)]
          Length = 1218

 Score =  102 bits (254), Expect = 8e-20
 Identities = 50/129 (38%), Positives = 79/129 (60%), Gaps = 1/129 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 339 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 398

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VG+    TTF V+  K ++++LLGR+WIH    +PS +HQ +  W+ D  +E
Sbjct: 399 GGLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSAMHQCLIKWQGD-KIE 457

Query: 121 NVEADQSYF 129
            V  D  YF
Sbjct: 458 IVPTDSYYF 466



 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 28/41 (68%), Positives = 33/41 (80%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAIPLK V   + I F+Q+ IIYRFGI +TITTDQG
Sbjct: 953  FTKWVEAIPLKKVDSGDAIQFVQEHIIYRFGILQTITTDQG 993


>gb|AAX92831.1| retrotransposon protein, putative, unclassified [Oryza sativa
           (japonica cultivar-group)]
          Length = 1497

 Score =  102 bits (253), Expect = 1e-19
 Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 1/131 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           P +I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 512 PFYINGYVNGKPMSKMIVDGGAAVNLMPYAMFRKLGRNVEDLIKTNMVLKDFGGNPSETK 571

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VGS    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D   E
Sbjct: 572 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKR-E 630

Query: 121 NVEADQSYFLA 131
            V AD+S  +A
Sbjct: 631 IVPADRSVNVA 641



 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 27/41 (65%), Positives = 33/41 (79%)

Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
            FTKW+EAI LK V   + I F+Q+ IIYRFG+P+TITTDQG
Sbjct: 1232 FTKWVEAILLKKVDSGDAIQFVQEHIIYRFGLPQTITTDQG 1272


>emb|CAE76044.1| B1248C03.3 [Oryza sativa (japonica cultivar-group)]
            gi|50921499|ref|XP_471110.1| OSJNBa0042N22.17 [Oryza
            sativa (japonica cultivar-group)]
            gi|38569163|emb|CAE75872.1| OSJNBa0042N22.17 [Oryza
            sativa (japonica cultivar-group)]
          Length = 1436

 Score =  102 bits (253), Expect = 1e-19
 Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 1/125 (0%)

Query: 1    PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
            PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+S  + 
Sbjct: 888  PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRNAEDLIRMNMVLKDFGGNSSETK 947

Query: 61   GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
            G + +EL VGS    T+F V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  VE
Sbjct: 948  GVLNVELTVGSKTIPTSFFVIDGKGSYSLLLGRDWIHVNCCIPSTMHQCLIQWQGD-KVE 1006

Query: 121  NVEAD 125
             V AD
Sbjct: 1007 IVPAD 1011


>gb|AAX96581.1| retrotransposon protein, putative, unclassified [Oryza sativa
           (japonica cultivar-group)] gi|62732709|gb|AAX94828.1|
           retrotransposon protein, putative, unclassified [Oryza
           sativa (japonica cultivar-group)]
          Length = 1205

 Score =  101 bits (252), Expect = 1e-19
 Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 1/125 (0%)

Query: 1   PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
           PL+I   +NG  ++K++VDGGA VNL+P +   K+G    DL   N++L ++ G+   + 
Sbjct: 819 PLYINGYVNGKPMSKMMVDGGAAVNLIPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 878

Query: 61  GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
           G + +EL VG+    TTF V+  K ++++LLGR+WIH    +PST+HQ +  W+ D  +E
Sbjct: 879 GVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 937

Query: 121 NVEAD 125
            V AD
Sbjct: 938 IVPAD 942


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.348    0.153    0.528 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,806,082,752
Number of Sequences: 2540612
Number of extensions: 69988307
Number of successful extensions: 231560
Number of sequences better than 10.0: 824
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 448
Number of HSP's that attempted gapping in prelim test: 230354
Number of HSP's gapped (non-prelim): 1377
length of query: 1194
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1055
effective length of database: 510,215,326
effective search space: 538277168930
effective search space used: 538277168930
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 81 (35.8 bits)


Medicago: description of AC140773.4