BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.4 + phase: 0 /pseudo
(1194 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP53484.1| putative retroelement [Oryza sativa (japonica cul... 106 5e-21
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 105 1e-20
gb|AAQ56307.1| putative gag-pol precursor [Oryza sativa (japonic... 104 2e-20
emb|CAE05186.2| OSJNBa0013A04.23 [Oryza sativa (japonica cultiva... 104 2e-20
ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultiv... 104 2e-20
emb|CAE03297.2| OSJNBb0046P18.13 [Oryza sativa (japonica cultiva... 103 3e-20
ref|XP_471564.1| OSJNBb0032D24.5 [Oryza sativa (japonica cultiva... 103 3e-20
ref|XP_474664.1| OSJNBa0052P16.15 [Oryza sativa (japonica cultiv... 103 3e-20
gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativ... 103 3e-20
ref|NP_910301.1| ESTs C97394(C60113),AU075824(R0165),D38985(R016... 103 5e-20
gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cul... 102 6e-20
gb|AAP52537.1| putative gag-pol precursor [Oryza sativa (japonic... 102 6e-20
emb|CAD40096.1| OSJNBb0012A12.6 [Oryza sativa (japonica cultivar... 102 6e-20
ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (j... 102 6e-20
gb|AAT93877.1| putative polyprotein [Oryza sativa (japonica cult... 102 6e-20
gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica ... 102 8e-20
emb|CAE05825.1| OSJNBa0028M15.17 [Oryza sativa (japonica cultiva... 102 8e-20
gb|AAX92831.1| retrotransposon protein, putative, unclassified [... 102 1e-19
emb|CAE76044.1| B1248C03.3 [Oryza sativa (japonica cultivar-grou... 102 1e-19
gb|AAX96581.1| retrotransposon protein, putative, unclassified [... 101 1e-19
>gb|AAP53484.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533790|ref|NP_921197.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21672097|gb|AAM74459.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 106 bits (264), Expect = 5e-21
Identities = 52/134 (38%), Positives = 85/134 (62%), Gaps = 1/134 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG+ ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 365 PLYINGYVNGMPLSKIMVDGGAVVNLMPYATFRKLGRNSEDLIKTNMVLKDFGGNPSETK 424
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D ++
Sbjct: 425 GVLNVELTVGSKTVPTTFFVIDRKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIK 483
Query: 121 NVEADQSYFLAEVN 134
V AD+S +A +
Sbjct: 484 IVPADRSVNVASAD 497
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 105 bits (261), Expect = 1e-20
Identities = 51/125 (40%), Positives = 80/125 (63%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ ++
Sbjct: 363 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETM 422
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 423 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTIHQCLIQWQGD-KIE 481
Query: 121 NVEAD 125
V AD
Sbjct: 482 IVPAD 486
Score = 63.5 bits (153), Expect = 4e-08
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW+EAIPLK V + I F+Q+ IIYR GIP+TITTDQG
Sbjct: 1315 FTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQG 1355
>gb|AAQ56307.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 1672
Score = 104 bits (260), Expect = 2e-20
Identities = 54/133 (40%), Positives = 83/133 (61%), Gaps = 1/133 (0%)
Query: 2 LFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSLG 61
L+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ + G
Sbjct: 656 LYINGYVNGKPMSKMMVDGGAAVNLIPYAKFRKLGRNAEDLIKTNMVLKDFGGNPSETKG 715
Query: 62 AIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVEN 121
+ +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D L E
Sbjct: 716 VLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKL-EI 774
Query: 122 VEADQSYFLAEVN 134
V AD+S +A N
Sbjct: 775 VPADRSVNVASAN 787
Score = 61.6 bits (148), Expect = 2e-07
Identities = 27/41 (65%), Positives = 32/41 (77%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW+EAIPLK V + I F Q+ +IYRF IP+TITTDQG
Sbjct: 1407 FTKWLEAIPLKKVDSGDAIQFFQEHVIYRFDIPQTITTDQG 1447
>emb|CAE05186.2| OSJNBa0013A04.23 [Oryza sativa (japonica cultivar-group)]
gi|32483243|emb|CAE02544.1| OSJNBb0069N01.4 [Oryza
sativa (japonica cultivar-group)]
gi|50922097|ref|XP_471409.1| OSJNBa0013A04.23 [Oryza
sativa (japonica cultivar-group)]
Length = 1235
Score = 104 bits (259), Expect = 2e-20
Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+++ +NG ++K++VDGGA VNL+P + K+G DL NV+L ++ G+ +
Sbjct: 205 PLYVKGFVNGKPMSKMMVDGGAAVNLMPYATFRKLGKNADDLIKTNVVLNDFGGNPSENK 264
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL +GS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 265 GVLNVELTIGSKTDPTTFFVIDGKGSYSMLLGRDWIHANCCIPSTMHQSLIQWQGD-KIE 323
Query: 121 NVEADQSYFLAEVN 134
V AD + N
Sbjct: 324 IVLADSQLKMESPN 337
Score = 58.2 bits (139), Expect = 2e-06
Identities = 22/40 (55%), Positives = 32/40 (80%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQ 1193
FTKW+EA+PLK V + I ++++I+YRFG+P+ ITTDQ
Sbjct: 970 FTKWVEAVPLKKVDSGDAIQLVKEYIVYRFGVPQIITTDQ 1009
>ref|XP_474437.1| OSJNBa0070M12.15 [Oryza sativa (japonica cultivar-group)]
gi|38345832|emb|CAE01862.2| OSJNBa0070M12.15 [Oryza
sativa (japonica cultivar-group)]
Length = 1685
Score = 104 bits (259), Expect = 2e-20
Identities = 52/125 (41%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 739 PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRTTEDLMKTNMVLKDFGGNPSETK 798
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D VE
Sbjct: 799 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KVE 857
Query: 121 NVEAD 125
V AD
Sbjct: 858 IVPAD 862
>emb|CAE03297.2| OSJNBb0046P18.13 [Oryza sativa (japonica cultivar-group)]
gi|38344460|emb|CAE04931.2| OSJNBa0017P10.8 [Oryza
sativa (japonica cultivar-group)]
gi|50921969|ref|XP_471345.1| OSJNBb0046P18.13 [Oryza
sativa (japonica cultivar-group)]
Length = 766
Score = 103 bits (258), Expect = 3e-20
Identities = 53/134 (39%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N+ L ++ G+ +
Sbjct: 357 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKMNMALKDFGGNPSETK 416
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 417 GVLNVELSVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 475
Query: 121 NVEADQSYFLAEVN 134
V AD+S +A +
Sbjct: 476 IVPADRSVNVASAD 489
>ref|XP_471564.1| OSJNBb0032D24.5 [Oryza sativa (japonica cultivar-group)]
gi|32487629|emb|CAE04075.1| OSJNBb0032D24.5 [Oryza
sativa (japonica cultivar-group)]
Length = 1355
Score = 103 bits (258), Expect = 3e-20
Identities = 52/134 (38%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 352 PLYINGYVNGKPLSKMIVDGGAAVNLMPYATFRKLGRSSDDLIKTNMVLKDFGGNQSETK 411
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+ Q + W+ D +E
Sbjct: 412 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMQQCLIQWQGD-KIE 470
Query: 121 NVEADQSYFLAEVN 134
V AD+S +A +
Sbjct: 471 IVPADRSVNIASAD 484
Score = 65.1 bits (157), Expect = 1e-08
Identities = 28/41 (68%), Positives = 34/41 (82%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW++AIPLK V + I F+Q+ IIYRFGIP+TITTDQG
Sbjct: 1241 FTKWVDAIPLKKVDSGDAIQFVQEHIIYRFGIPQTITTDQG 1281
>ref|XP_474664.1| OSJNBa0052P16.15 [Oryza sativa (japonica cultivar-group)]
gi|21741600|emb|CAD39716.1| OSJNBa0052P16.15 [Oryza
sativa (japonica cultivar-group)]
Length = 858
Score = 103 bits (257), Expect = 3e-20
Identities = 52/127 (40%), Positives = 79/127 (61%), Gaps = 1/127 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++ ++VDGGATVNL+P + K+G DL N++L ++ G+ +
Sbjct: 567 PLYINGFVNGKPMSNMMVDGGATVNLMPYATFRKLGRNAEDLSKTNMVLKDFGGNPSETK 626
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K +++LLGR+WIH +PST+HQ + W E +E
Sbjct: 627 GVLNVELTVGSKTIPTTFFVIDGKGCYSLLLGRDWIHANCCIPSTMHQCLIQW-EGNKIE 685
Query: 121 NVEADQS 127
V AD+S
Sbjct: 686 IVPADRS 692
>gb|AAT77888.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 1251
Score = 103 bits (257), Expect = 3e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 700 PLYINGYVNGKSMSKMMVDGGAAVNLMPYATFKKLGRNAEDLIKTNMVLKDFGGNPSETR 759
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 760 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 818
Query: 121 NVEAD 125
V AD
Sbjct: 819 IVPAD 823
>ref|NP_910301.1| ESTs C97394(C60113),AU075824(R0165),D38985(R0165) correspond to a
region of the predicted gene.~Similar to Arabidopsis
thaliana chromosome II BAC F15O11 genomic sequence;
putative pol polyprotein with a reverse transcriptase
domain (AC006446) [Oryza sativa (japonica
cultivar-group)]
Length = 793
Score = 103 bits (256), Expect = 5e-20
Identities = 52/127 (40%), Positives = 77/127 (59%), Gaps = 1/127 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+++ ++G V+++LVDGG VNL+P S K+G D++LK N++L + G +
Sbjct: 45 PLYLKGHVDGKPVSRMLVDGGVAVNLMPYSLFKKLGREDNELKKTNMVLNGFNGEPMEAK 104
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G +EL VG+ T F +V + N+NV+LGR WIH VPST+HQ + W D VE
Sbjct: 105 GIFSVELTVGNNTLPTAFFIVDVQGNYNVILGRCWIHANCCVPSTLHQCLIQWDGDD-VE 163
Query: 121 NVEADQS 127
V+ D S
Sbjct: 164 IVKTDTS 170
>gb|AAP53041.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37532904|ref|NP_920754.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1025
Score = 102 bits (255), Expect = 6e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 120 PLYINGYVNGKPLSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 179
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 180 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 238
Query: 121 NVEAD 125
V AD
Sbjct: 239 IVPAD 243
Score = 64.3 bits (155), Expect = 2e-08
Identities = 35/69 (50%), Positives = 41/69 (58%), Gaps = 8/69 (11%)
Query: 1134 RGD*TYFIEMI--------QIYLSRDRLFTKWIEAIPLKDVTQEEVISFIQKFIIYRFGI 1185
RG Y I MI Q L FTKW+EAIPLK V + I F+ + IIYRFG+
Sbjct: 903 RGWGIYMIGMINPPSSKGHQFILVATDYFTKWVEAIPLKKVDSGDAIQFVHEHIIYRFGL 962
Query: 1186 PETITTDQG 1194
P+TITTDQG
Sbjct: 963 PQTITTDQG 971
>gb|AAP52537.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|62733455|gb|AAX95572.1| Reverse transcriptase
(RNA-dependent DNA polymerase), putative [Oryza sativa
(japonica cultivar-group)] gi|37531896|ref|NP_920250.1|
putative gag-pol precursor [Oryza sativa (japonica
cultivar-group)] gi|62733437|gb|AAX95554.1| Reverse
transcriptase (RNA-dependent DNA polymerase), putative
[Oryza sativa (japonica cultivar-group)]
Length = 1383
Score = 102 bits (255), Expect = 6e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 649 PLYINGYVNGKPMSKMIVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 708
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 709 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 767
Query: 121 NVEAD 125
V AD
Sbjct: 768 IVPAD 772
Score = 57.8 bits (138), Expect = 2e-06
Identities = 25/41 (60%), Positives = 30/41 (72%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW+EAIPLK + I F+Q+ IIYRFGI + I TDQG
Sbjct: 1241 FTKWVEAIPLKKANSGDAIQFVQEHIIYRFGISQNIMTDQG 1281
>emb|CAD40096.1| OSJNBb0012A12.6 [Oryza sativa (japonica cultivar-group)]
gi|38347024|emb|CAE02552.2| OSJNBb0069N01.26 [Oryza
sativa (japonica cultivar-group)]
gi|50922141|ref|XP_471431.1| OSJNBb0069N01.26 [Oryza
sativa (japonica cultivar-group)]
Length = 243
Score = 102 bits (255), Expect = 6e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 48 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNSYDLIKTNMVLKDFGGNPSETK 107
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 108 GVLNVELTVGSKTVPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 166
Query: 121 NVEAD 125
V AD
Sbjct: 167 IVPAD 171
>ref|XP_468901.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|41393197|gb|AAS01920.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1149
Score = 102 bits (255), Expect = 6e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 662 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLEDFGGNPSETK 721
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 722 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 780
Query: 121 NVEAD 125
V AD
Sbjct: 781 IVPAD 785
>gb|AAT93877.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1418
Score = 102 bits (255), Expect = 6e-20
Identities = 51/125 (40%), Positives = 79/125 (62%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 856 PLYINGYVNGKPMSKMMVDGGAAVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 915
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 916 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 974
Query: 121 NVEAD 125
V AD
Sbjct: 975 IVPAD 979
>gb|AAP52791.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532404|ref|NP_920504.1| putative pol polyprotein
[Oryza sativa (japonica cultivar-group)]
gi|19881646|gb|AAM01047.1| putative pol polyprotein
[Oryza sativa]
Length = 505
Score = 102 bits (254), Expect = 8e-20
Identities = 55/136 (40%), Positives = 82/136 (59%), Gaps = 1/136 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+++ I+G V+++LVD GA VNL+P S ++G D +LK N+IL + G +
Sbjct: 321 PLYLKGHIDGKPVSRMLVDRGAAVNLMPYSLFKRLGRGDDELKKTNMILNGFNGEPTEAK 380
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G +EL +G+ TTF +V + ++NV+LGR WIH VPST+HQ + W D VE
Sbjct: 381 GIFSVELTMGNKTLPTTFFIVDVQGSYNVILGRCWIHANCCVPSTLHQCLIQWDGDD-VE 439
Query: 121 NVEADQSYFLAEVNTI 136
V+AD S +A + I
Sbjct: 440 IVQADTSTEVAMADAI 455
>emb|CAE05825.1| OSJNBa0028M15.17 [Oryza sativa (japonica cultivar-group)]
gi|50930957|ref|XP_475006.1| OSJNBa0028M15.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1218
Score = 102 bits (254), Expect = 8e-20
Identities = 50/129 (38%), Positives = 79/129 (60%), Gaps = 1/129 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 339 PLYINGYVNGKPMSKMMVDGGAVVNLMPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 398
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VG+ TTF V+ K ++++LLGR+WIH +PS +HQ + W+ D +E
Sbjct: 399 GGLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSAMHQCLIKWQGD-KIE 457
Query: 121 NVEADQSYF 129
V D YF
Sbjct: 458 IVPTDSYYF 466
Score = 62.4 bits (150), Expect = 9e-08
Identities = 28/41 (68%), Positives = 33/41 (80%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW+EAIPLK V + I F+Q+ IIYRFGI +TITTDQG
Sbjct: 953 FTKWVEAIPLKKVDSGDAIQFVQEHIIYRFGILQTITTDQG 993
>gb|AAX92831.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 1497
Score = 102 bits (253), Expect = 1e-19
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 1/131 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
P +I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 512 PFYINGYVNGKPMSKMIVDGGAAVNLMPYAMFRKLGRNVEDLIKTNMVLKDFGGNPSETK 571
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D E
Sbjct: 572 GVLNVELTVGSKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGDKR-E 630
Query: 121 NVEADQSYFLA 131
V AD+S +A
Sbjct: 631 IVPADRSVNVA 641
Score = 61.6 bits (148), Expect = 2e-07
Identities = 27/41 (65%), Positives = 33/41 (79%)
Query: 1154 FTKWIEAIPLKDVTQEEVISFIQKFIIYRFGIPETITTDQG 1194
FTKW+EAI LK V + I F+Q+ IIYRFG+P+TITTDQG
Sbjct: 1232 FTKWVEAILLKKVDSGDAIQFVQEHIIYRFGLPQTITTDQG 1272
>emb|CAE76044.1| B1248C03.3 [Oryza sativa (japonica cultivar-group)]
gi|50921499|ref|XP_471110.1| OSJNBa0042N22.17 [Oryza
sativa (japonica cultivar-group)]
gi|38569163|emb|CAE75872.1| OSJNBa0042N22.17 [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 102 bits (253), Expect = 1e-19
Identities = 52/125 (41%), Positives = 80/125 (63%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+S +
Sbjct: 888 PLYINGYVNGKPMSKMMVDGGAAVNLMPYTTFRKLGRNAEDLIRMNMVLKDFGGNSSETK 947
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VGS T+F V+ K ++++LLGR+WIH +PST+HQ + W+ D VE
Sbjct: 948 GVLNVELTVGSKTIPTSFFVIDGKGSYSLLLGRDWIHVNCCIPSTMHQCLIQWQGD-KVE 1006
Query: 121 NVEAD 125
V AD
Sbjct: 1007 IVPAD 1011
>gb|AAX96581.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62732709|gb|AAX94828.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 101 bits (252), Expect = 1e-19
Identities = 50/125 (40%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 1 PLFIQAKINGVGVNKVLVDGGATVNLLPQSFLGKIGLYDSDLKPHNVILTNYEGSSGNSL 60
PL+I +NG ++K++VDGGA VNL+P + K+G DL N++L ++ G+ +
Sbjct: 819 PLYINGYVNGKPMSKMMVDGGAAVNLIPYATFRKLGRNAEDLIKTNMVLKDFGGNPSETK 878
Query: 61 GAIKLELMVGSTKRITTFMVVPSKANFNVLLGREWIHGVGAVPSTVHQRIAIWKEDGLVE 120
G + +EL VG+ TTF V+ K ++++LLGR+WIH +PST+HQ + W+ D +E
Sbjct: 879 GVLNVELTVGNKTIPTTFFVIDGKGSYSLLLGRDWIHANCCIPSTMHQCLIQWQGD-KIE 937
Query: 121 NVEAD 125
V AD
Sbjct: 938 IVPAD 942
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.348 0.153 0.528
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,806,082,752
Number of Sequences: 2540612
Number of extensions: 69988307
Number of successful extensions: 231560
Number of sequences better than 10.0: 824
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 448
Number of HSP's that attempted gapping in prelim test: 230354
Number of HSP's gapped (non-prelim): 1377
length of query: 1194
length of database: 863,360,394
effective HSP length: 139
effective length of query: 1055
effective length of database: 510,215,326
effective search space: 538277168930
effective search space used: 538277168930
T: 11
A: 40
X1: 14 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 81 (35.8 bits)
Medicago: description of AC140773.4