BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140773.3 + phase: 0 /partial
(140 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC44107.1| putative polyprotein [Cicer arietinum] 195 2e-49
gb|AAO45752.1| pol protein [Cucumis melo] 144 3e-34
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 127 6e-29
gb|AAT39954.1| putative integrase [Solanum demissum] 127 6e-29
gb|AAT66771.1| putative polyprotein [Solanum demissum] 127 7e-29
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 124 6e-28
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 122 1e-27
gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] g... 120 5e-27
gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum] 120 5e-27
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 118 3e-26
prf||1510387A retrotransposon del1-46 116 1e-25
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia... 115 3e-25
gb|AAD22158.1| polyprotein [Sorghum bicolor] 111 3e-24
gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cult... 110 7e-24
gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica ... 110 7e-24
emb|CAB80807.1| putative transposon protein [Arabidopsis thalian... 110 9e-24
emb|CAE75973.1| B1160F02.4 [Oryza sativa (japonica cultivar-grou... 109 1e-23
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 109 1e-23
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 109 1e-23
gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cul... 109 2e-23
>emb|CAC44107.1| putative polyprotein [Cicer arietinum]
Length = 141
Score = 195 bits (496), Expect = 2e-49
Identities = 93/138 (67%), Positives = 111/138 (80%), Gaps = 1/138 (0%)
Query: 2 EGDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHV 61
+GDHVF RVTP TGVGRALKSKKLT +FIGPYQIS R+G V YR+ L P LSN+HDVFHV
Sbjct: 2 QGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQISARIGPVAYRIALPPILSNIHDVFHV 61
Query: 62 SQLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGE 121
SQLRKY+ DPSHVI+ D +Q++DNL+ E PVRIDD K+K LR K++ LVK +W TG+
Sbjct: 62 SQLRKYLADPSHVIEPDTIQLKDNLSFEVPPVRIDDMKIKRLRTKDVSLVKVIWNPITGD 121
Query: 122 SLTWELESKKLESYPELF 139
+ TWELESK E +PELF
Sbjct: 122 A-TWELESKMREQHPELF 138
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 144 bits (364), Expect = 3e-34
Identities = 69/137 (50%), Positives = 91/137 (66%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD VF +V P+ GV R + KL+ RF+GP++I +R+G V YR+ L P LS +HDVFHVS
Sbjct: 785 GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVS 844
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LRKY+PDPSHV+ + +++ +NL+ PV + R VKTLR K+IPLVK +W E
Sbjct: 845 MLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEE 904
Query: 123 LTWELESKKLESYPELF 139
TWE E YPELF
Sbjct: 905 ATWEREDDMRSRYPELF 921
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 127 bits (319), Expect = 6e-29
Identities = 65/137 (47%), Positives = 85/137 (61%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD VF RV+P+ GV R + KL+ R+IGP++I VG V Y + L P S +H VFHVS
Sbjct: 252 GDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVS 311
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LR+Y+PD SHV+Q D V++ D LT PV I R V+ LR + IP+VK W + E
Sbjct: 312 MLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHCSVEE 371
Query: 123 LTWELESKKLESYPELF 139
TWE E + E +P LF
Sbjct: 372 ATWETEQEMREQFPGLF 388
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 127 bits (319), Expect = 6e-29
Identities = 65/137 (47%), Positives = 84/137 (60%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD VFFRV+P+ GV R + KL+ R+IGP++I VG V Y + L P S +H VFHV
Sbjct: 1326 GDRVFFRVSPMKGVMRFGRRDKLSPRYIGPFEILRTVGEVAYELALPPAFSAIHPVFHVP 1385
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LR+Y+PD SHV+Q D V++ D LT P+ I R VK LR + IP+VK W E
Sbjct: 1386 MLRRYVPDESHVLQYDAVELDDRLTFVEEPIAILARDVKRLRSRAIPVVKVHWRHRPVEE 1445
Query: 123 LTWELESKKLESYPELF 139
TWE E + E +P LF
Sbjct: 1446 ATWETEQEMREQFPVLF 1462
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 127 bits (318), Expect = 7e-29
Identities = 65/137 (47%), Positives = 84/137 (60%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD VF RV+P+ GV R + KL+ R+IGP++I VG V Y + L P S +H VFHVS
Sbjct: 1627 GDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSAIHPVFHVS 1686
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LR+Y+PD SHV+Q D V++ D LT PV I R V+ LR + IP+VK W E
Sbjct: 1687 MLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVRWRHRPVEE 1746
Query: 123 LTWELESKKLESYPELF 139
TWE E + E +P LF
Sbjct: 1747 ATWETEQEMREQFPSLF 1763
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 124 bits (310), Expect = 6e-28
Identities = 60/137 (43%), Positives = 85/137 (61%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD V RV+P G+ R + KL+ R+IGP+ I+ RVG++ YR+ L ++ +HDVFHVS
Sbjct: 409 GDQVLLRVSPTKGIVRFGTTGKLSPRYIGPFVITARVGSLAYRLQLPESMNGVHDVFHVS 468
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LRKY+ DP H I + + V +LT+E PVRI D + +R + I VK +W +
Sbjct: 469 MLRKYLRDPEHKIDLEPIMVEQDLTIECRPVRIFDWSERVMRRRTIKYVKVLWTNQSERE 528
Query: 123 LTWELESKKLESYPELF 139
TWELE + + YPELF
Sbjct: 529 ATWELEEEMKKKYPELF 545
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 122 bits (307), Expect = 1e-27
Identities = 60/136 (44%), Positives = 89/136 (65%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ +V+P+ GV R K KL+ R+IGPY+I RVG+V Y + L L+ +H VFH+S
Sbjct: 1460 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAAVHPVFHISM 1519
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K I DPS ++ ++ V+++DNL+ E +PV+I DR+V+ LR K++ VK +W E
Sbjct: 1520 LKKCIGDPSLILPTESVKIKDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRNQFVEEA 1579
Query: 124 TWELESKKLESYPELF 139
TWE E + YP LF
Sbjct: 1580 TWEAEEDMKKRYPHLF 1595
>gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum]
gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein
[Solanum demissum]
Length = 1351
Score = 120 bits (302), Expect = 5e-27
Identities = 58/136 (42%), Positives = 88/136 (64%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ +V+P+ GV R K KL+ R+IGPY+I+ R+G V Y + L L+ +H VFH+S
Sbjct: 1209 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISM 1268
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K I DPS ++ ++ +++ DNL+ E +PV+I DR+V+ LR K++ VK +W E
Sbjct: 1269 LKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRDQFVEEA 1328
Query: 124 TWELESKKLESYPELF 139
TWE E + YP LF
Sbjct: 1329 TWEAEEDMKKKYPYLF 1344
>gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1351
Score = 120 bits (302), Expect = 5e-27
Identities = 58/136 (42%), Positives = 88/136 (64%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ +V+P+ GV R K KL+ R+IGPY+I+ R+G V Y + L L+ +H VFH+S
Sbjct: 1209 DWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAAVHPVFHISM 1268
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K I DPS ++ ++ +++ DNL+ E +PV+I DR+V+ LR K++ VK +W E
Sbjct: 1269 LKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVLWRDQFVEEA 1328
Query: 124 TWELESKKLESYPELF 139
TWE E + YP LF
Sbjct: 1329 TWEAEEDMKKKYPYLF 1344
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 118 bits (295), Expect = 3e-26
Identities = 58/137 (42%), Positives = 82/137 (59%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD V+ + G GR KKL+ R++GPY++ +RVG V Y++ L P L+ H+VFHVS
Sbjct: 1446 GDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVS 1505
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
QLRK + D ++ +++N+TVE PVRI DR K RGK L+K +W E
Sbjct: 1506 QLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVLWNCRGREE 1565
Query: 123 LTWELESKKLESYPELF 139
TWE E+K ++PE F
Sbjct: 1566 YTWETENKMKANFPEWF 1582
>prf||1510387A retrotransposon del1-46
Length = 1443
Score = 116 bits (290), Expect = 1e-25
Identities = 54/137 (39%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
G+H+F V+P G + KL+ R+ GP++I + + V YR+ L P LS++H+VFH+S
Sbjct: 1305 GNHIFLEVSPRKGTSYFVFKGKLSPRYTGPFEILEIIWPVAYRLALPPMLSSIHNVFHIS 1364
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
LRKY PDPSH++ +D+++ +++ E PV++ + K LR K I +VK +W+ + E
Sbjct: 1365 MLRKYEPDPSHILDWEDLRLNPDISYEEKPVQVLASESKVLRNKIILMVKVLWQHHSEEE 1424
Query: 123 LTWELESKKLESYPELF 139
TWELE+ ++ +P LF
Sbjct: 1425 ATWELEA-DMQEFPNLF 1440
>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268441|emb|CAB80961.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25407549|pir||F85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 687
Score = 115 bits (287), Expect = 3e-25
Identities = 56/137 (40%), Positives = 81/137 (58%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GD V+ + G GR KKL R++GPY++ +RVG V Y++ L P L H+VFHVS
Sbjct: 530 GDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDAFHNVFHVS 589
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
QLRK + + ++ +++N+TVE PVRI D+ K RGK + L+K +W E
Sbjct: 590 QLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKILWNCGGREE 649
Query: 123 LTWELESKKLESYPELF 139
TWE E+K ++PE F
Sbjct: 650 YTWETETKMKANFPEWF 666
>gb|AAD22158.1| polyprotein [Sorghum bicolor]
Length = 924
Score = 111 bits (278), Expect = 3e-24
Identities = 56/137 (40%), Positives = 77/137 (55%)
Query: 3 GDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVS 62
GDHV+ +V+P+ G R KL RF+GPY+IS R+G + YR+ L +S +H VFHVS
Sbjct: 782 GDHVYLKVSPLRGTFRFHVKGKLAPRFVGPYRISKRIGKLAYRLELPEEMSGVHPVFHVS 841
Query: 63 QLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGES 122
QLRK + P + + + +++ L PVRI DR K R P+ K +W T
Sbjct: 842 QLRKCLKLPEEEVPIETLDLQETLEYREYPVRILDRATKETRSSTFPMCKVLWSNHTERE 901
Query: 123 LTWELESKKLESYPELF 139
TWE ES+ YP LF
Sbjct: 902 ATWEKESELQLRYPYLF 918
>gb|AAT85771.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 1169
Score = 110 bits (275), Expect = 7e-24
Identities = 57/136 (41%), Positives = 79/136 (57%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ RVTP+ GV R KL RF+GP++I R G V Y++ L L N+HDVFHVSQ
Sbjct: 1022 DFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQ 1081
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K + PS S+ ++VR++LT E PV+I D + R + I K W E
Sbjct: 1082 LKKCLRVPSEQADSEQIEVREDLTYEERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEA 1141
Query: 124 TWELESKKLESYPELF 139
TWE + + +YP+LF
Sbjct: 1142 TWERQDELKAAYPDLF 1157
>gb|AAT77831.1| putative pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 922
Score = 110 bits (275), Expect = 7e-24
Identities = 57/136 (41%), Positives = 79/136 (57%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ RVTP+ GV R KL RF+GP++I R G V Y++ L L N+HDVFHVSQ
Sbjct: 775 DFVYLRVTPLRGVHRFQTKGKLAPRFVGPFRIIARRGEVAYQLELPASLGNVHDVFHVSQ 834
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K + PS S+ ++VR++LT E PV+I D + R + I K W E
Sbjct: 835 LKKCLRVPSEQADSEQIEVREDLTYEERPVKILDTMERRTRNRVIRFCKVQWSNHAEEEA 894
Query: 124 TWELESKKLESYPELF 139
TWE + + +YP+LF
Sbjct: 895 TWERQDELKAAYPDLF 910
>emb|CAB80807.1| putative transposon protein [Arabidopsis thaliana]
gi|3319363|gb|AAC26251.1| contains similarity to reverse
transcriptase (Pfam: rvt.hmm, score: 33.26) [Arabidopsis
thaliana] gi|7487790|pir||T01862 hypothetical protein
T7M24.4 - Arabidopsis thaliana
Length = 973
Score = 110 bits (274), Expect = 9e-24
Identities = 54/136 (39%), Positives = 80/136 (58%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ + G GR KKL+ R++GPY++ +RVG V Y++ L P L+ H+VFHVSQ
Sbjct: 809 DLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNAFHNVFHVSQ 868
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
LRK + + ++ +++N+TVE PV+I DR K RGK L+K +W E
Sbjct: 869 LRKCLSNQEESVEDVPPGLKENMTVEAWPVQIMDRMTKGTRGKSRDLLKVLWNCGGREQY 928
Query: 124 TWELESKKLESYPELF 139
TWE E+K ++ E F
Sbjct: 929 TWETENKMKANFSEWF 944
>emb|CAE75973.1| B1160F02.4 [Oryza sativa (japonica cultivar-group)]
gi|50921149|ref|XP_470935.1| B1160F02.4 [Oryza sativa
(japonica cultivar-group)]
Length = 1618
Score = 109 bits (273), Expect = 1e-23
Identities = 57/136 (41%), Positives = 79/136 (57%)
Query: 4 DHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHVSQ 63
D V+ RVTP+ GV R L KL RF+GP++I R G V Y++ L L N+HDVFHVSQ
Sbjct: 1471 DFVYLRVTPLRGVHRFLTKGKLAPRFVGPFRIIARCGEVAYQLELPASLGNVHDVFHVSQ 1530
Query: 64 LRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGESL 123
L+K + PS S+ ++VR++LT PV+I D + R + I K W E
Sbjct: 1531 LKKCLRVPSEQADSEQIEVREDLTYVERPVKILDTMERRARNRVIRFCKVQWSNHAEEEA 1590
Query: 124 TWELESKKLESYPELF 139
TWE E++ ++P LF
Sbjct: 1591 TWERENELKAAHPNLF 1606
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza sativa
(japonica cultivar-group)]
Length = 1447
Score = 109 bits (273), Expect = 1e-23
Identities = 55/138 (39%), Positives = 81/138 (57%)
Query: 2 EGDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHV 61
EGD+V+ RVTP+ GV R KL RF+GPY+I R G V Y++ L P ++ +HDVFHV
Sbjct: 1298 EGDYVYLRVTPLQGVHRFQTKGKLAPRFVGPYKIVSRRGEVAYQLELPPSMAGIHDVFHV 1357
Query: 62 SQLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGE 121
SQL+K + P+ D ++++++LT PVRI + + R + I K W + E
Sbjct: 1358 SQLKKCLRVPTEEADPDCIELQEDLTYVEKPVRILEVSERNTRNRVIRFCKVQWSNHSEE 1417
Query: 122 SLTWELESKKLESYPELF 139
TWE E + ++P LF
Sbjct: 1418 EATWEREDELKSAHPHLF 1435
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 109 bits (273), Expect = 1e-23
Identities = 54/138 (39%), Positives = 82/138 (59%)
Query: 2 EGDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHV 61
EGD+V+ RVTP+ GV R +KL RF+GP++I R G V Y++ L P ++ +HDVFHV
Sbjct: 1568 EGDYVYLRVTPLRGVHRFQTKEKLAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHV 1627
Query: 62 SQLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGE 121
SQL+K + P+ D ++++++LT PVRI + + R + I K W + E
Sbjct: 1628 SQLKKCLRVPTEEADPDRIELQEDLTYVEKPVRILEVSERNTRNRVIRFCKVQWSNHSEE 1687
Query: 122 SLTWELESKKLESYPELF 139
TWE E + ++P LF
Sbjct: 1688 EATWEREDELKSAHPHLF 1705
>gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531682|ref|NP_920143.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671933|gb|AAM74295.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 518
Score = 109 bits (272), Expect = 2e-23
Identities = 54/138 (39%), Positives = 81/138 (58%)
Query: 2 EGDHVFFRVTPVTGVGRALKSKKLTLRFIGPYQISDRVGTVVYRVGLAPYLSNLHDVFHV 61
EGD+V+ RVTP+ GV R KL RF+GP++I R G V Y++ L P ++ +HDVFHV
Sbjct: 369 EGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRRGEVAYQLELPPSMAGIHDVFHV 428
Query: 62 SQLRKYIPDPSHVIQSDDVQVRDNLTVETLPVRIDDRKVKTLRGKEIPLVKFVWEGATGE 121
SQL+K + P+ D ++++++LT PVRI + + R + I K W + E
Sbjct: 429 SQLKKCLRVPTEEADPDRIELQEDLTYVEKPVRILEESERKTRNRVIRFCKVQWSNHSEE 488
Query: 122 SLTWELESKKLESYPELF 139
TWE E + ++P LF
Sbjct: 489 EATWEREDELKSAHPHLF 506
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.143 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,627,160
Number of Sequences: 2540612
Number of extensions: 8614802
Number of successful extensions: 17956
Number of sequences better than 10.0: 660
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 17283
Number of HSP's gapped (non-prelim): 678
length of query: 140
length of database: 863,360,394
effective HSP length: 116
effective length of query: 24
effective length of database: 568,649,402
effective search space: 13647585648
effective search space used: 13647585648
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC140773.3