BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140772.6 + phase: 0 /partial
(40 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana] 50 2e-05
ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana] 50 2e-05
ref|NP_914485.1| P0489A01.23 [Oryza sativa (japonica cultivar-gr... 47 1e-04
emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228... 47 1e-04
gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|2019761... 47 1e-04
emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar... 47 2e-04
gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Ar... 46 2e-04
ref|NP_174828.1| AT hook motif-containing protein-related [Arabi... 46 2e-04
ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica c... 46 3e-04
ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica c... 46 3e-04
gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa... 46 3e-04
gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353... 45 4e-04
ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana] 45 4e-04
dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana] 45 5e-04
ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana] 45 5e-04
ref|NP_913627.1| putative helicase [Oryza sativa (japonica culti... 45 7e-04
dbj|BAB10788.1| replication protein A1-like [Arabidopsis thalian... 45 7e-04
ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana] 45 7e-04
dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cu... 45 7e-04
gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultiva... 43 0.002
>dbj|BAB01023.1| helicase-like protein [Arabidopsis thaliana]
Length = 1669
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV S+GGLK+LI D G N ++V+++E+FRN
Sbjct: 1629 LYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRN 1668
>ref|NP_189677.1| hypothetical protein [Arabidopsis thaliana]
Length = 1473
Score = 50.1 bits (118), Expect = 2e-05
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV S+GGLK+LI D G N ++V+++E+FRN
Sbjct: 1433 LYVAMSRVKSKGGLKVLITDSKGKQKNETTNVVFKEIFRN 1472
>ref|NP_914485.1| P0489A01.23 [Oryza sativa (japonica cultivar-group)]
Length = 1489
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYVTISR TSR GLKILI +DDG N +++Y E+
Sbjct: 1431 LYVTISRATSRSGLKILIENDDGSCGNHTRNIVYSEI 1467
>emb|CAB91581.1| putative protein [Arabidopsis thaliana] gi|15228453|ref|NP_189796.1|
AT hook motif-containing protein-related [Arabidopsis
thaliana] gi|11357786|pir||T48965 hypothetical protein
F4M19.60 - Arabidopsis thaliana
Length = 1752
Score = 47.4 bits (111), Expect = 1e-04
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG+ ++V+++EVF+N
Sbjct: 1711 LYVALSRVTSKKGLKILILDKDGNMQKQTTNVVFKEVFQN 1750
>gb|AAM15435.1| unknown protein [Arabidopsis thaliana] gi|20197614|gb|AAM15154.1|
unknown protein [Arabidopsis thaliana]
Length = 1308
Score = 47.0 bits (110), Expect = 1e-04
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRV SR GLKILI D++G+ ++V+++EVF+N
Sbjct: 1261 LYVAVSRVKSRRGLKILIIDEEGNRGKTTTNVVFKEVFQN 1300
>emb|CAD40309.2| OSJNBb0013O03.4 [Oryza sativa (japonica cultivar-group)]
Length = 2052
Score = 46.6 bits (109), Expect = 2e-04
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV ISR TSR GLKILI DD+ + S+V+Y E+ R+
Sbjct: 1378 LYVVISRATSRSGLKILIEDDNESCASETSNVVYHEILRS 1417
>gb|AAG52315.1| hypothetical protein, 5' partial; 93859-91015 [Arabidopsis
thaliana]
Length = 729
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG ++V+++EVF+N
Sbjct: 688 LYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQN 727
>ref|NP_174828.1| AT hook motif-containing protein-related [Arabidopsis thaliana]
gi|25511694|pir||D86481 189.6K hypothetical protein
F10O5.11 - Arabidopsis thaliana
gi|12322087|gb|AAG51081.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1678
Score = 46.2 bits (108), Expect = 2e-04
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D DG ++V+++EVF+N
Sbjct: 1637 LYVALSRVTSKKGLKILILDKDGKLQKQTTNVVFKEVFQN 1676
>ref|XP_481695.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|38424032|dbj|BAD01692.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|38637630|dbj|BAD03910.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1430
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1351 LYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1387
>ref|XP_479365.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
gi|50509840|dbj|BAD32013.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
gi|34394334|dbj|BAC84865.1| helicase-like protein [Oryza
sativa (japonica cultivar-group)]
Length = 1516
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1437 LYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1473
>gb|AAX95983.1| hypothetical protein LOC_Os11g13920 [Oryza sativa (japonica
cultivar-group)]
Length = 2157
Score = 45.8 bits (107), Expect = 3e-04
Identities = 22/37 (59%), Positives = 26/37 (69%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV ISRVTSR GLKILI +DDG +++Y EV
Sbjct: 1528 LYVAISRVTSRSGLKILIENDDGSCGTQTKNIVYSEV 1564
>gb|AAD32757.1| putative helicase [Arabidopsis thaliana] gi|25353663|pir||H84486
probable helicase [imported] - Arabidopsis thaliana
Length = 1241
Score = 45.4 bits (106), Expect = 4e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK+LI D +G+ + +V+++E+F+N
Sbjct: 1199 LYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQN 1238
>ref|NP_189741.1| hypothetical protein [Arabidopsis thaliana]
Length = 1099
Score = 45.4 bits (106), Expect = 4e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK+LI D +G+ + +V+++E+F+N
Sbjct: 1057 LYVALSRVTSKKGLKVLIVDKEGNTQSQTMNVVFKEIFQN 1096
>dbj|BAB02793.1| helicase-like protein [Arabidopsis thaliana]
Length = 1428
Score = 45.1 bits (105), Expect = 5e-04
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D +G ++V+++EVF+N
Sbjct: 1388 LYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQN 1427
>ref|NP_187933.1| hypothetical protein [Arabidopsis thaliana]
Length = 1419
Score = 45.1 bits (105), Expect = 5e-04
Identities = 21/40 (52%), Positives = 30/40 (74%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLKILI D +G ++V+++EVF+N
Sbjct: 1379 LYVALSRVTSKTGLKILILDKEGKIQKQTTNVVFKEVFQN 1418
>ref|NP_913627.1| putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1453
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV +SR TSR GL+ILI DDDG ++ +V+Y EV
Sbjct: 1401 LYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1437
>dbj|BAB10788.1| replication protein A1-like [Arabidopsis thaliana]
gi|3695387|gb|AAC62789.1| contains similarity to
replication protein A1 [Arabidopsis thaliana]
gi|7487549|pir||T01955 hypothetical protein T2L5.8 -
Arabidopsis thaliana
Length = 1073
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK LI D DG ++V+++EVF+N
Sbjct: 1032 LYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQN 1071
>ref|NP_198346.1| hypothetical protein [Arabidopsis thaliana]
Length = 1033
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/40 (52%), Positives = 29/40 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFRN 40
LYV +SRVTS+ GLK LI D DG ++V+++EVF+N
Sbjct: 992 LYVALSRVTSKKGLKFLILDKDGKLQKQTTNVVFKEVFQN 1031
>dbj|BAD81603.1| helicase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 1652
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREV 37
LYV +SR TSR GL+ILI DDDG ++ +V+Y EV
Sbjct: 1600 LYVAVSRSTSRDGLRILIKDDDGACSSKTRNVVYHEV 1636
>gb|AAP54108.1| putative helicase [Oryza sativa (japonica cultivar-group)]
gi|37535038|ref|NP_921821.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
gi|14140296|gb|AAK54302.1| putative helicase [Oryza
sativa (japonica cultivar-group)]
Length = 1573
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 1 LYVTISRVTSRGGLKILINDDDGDDTNVASSVIYREVFR 39
LYV +SRVTSR GLKI+I D + + +++Y+E+F+
Sbjct: 1535 LYVAVSRVTSRDGLKIMIADKECPGEGMVKNIVYKEIFQ 1573
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.139 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,047,188
Number of Sequences: 2540612
Number of extensions: 1456046
Number of successful extensions: 4177
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4135
Number of HSP's gapped (non-prelim): 50
length of query: 40
length of database: 863,360,394
effective HSP length: 16
effective length of query: 24
effective length of database: 822,710,602
effective search space: 19745054448
effective search space used: 19745054448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)
Medicago: description of AC140772.6