BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.8 + phase: 0 /pseudo
(59 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG00428.1| germin D [Hordeum vulgare] 50 2e-05
dbj|BAB10836.1| germin-like protein [Arabidopsis thaliana] gi|15... 48 6e-05
dbj|BAB09372.1| oxalate oxidase (germin protein)-like protein [A... 48 6e-05
gb|AAB51572.1| germin-like protein [Arabidopsis thaliana] gi|182... 48 8e-05
dbj|BAB10833.1| germin-like protein [Arabidopsis thaliana] gi|15... 47 1e-04
ref|XP_480453.1| germin protein type 1 [Oryza sativa (japonica c... 47 1e-04
gb|AAL05886.1| germin-like protein [Musa acuminata] 45 7e-04
gb|AAF26097.1| germin-like protein [Arabidopsis thaliana] gi|667... 44 9e-04
dbj|BAB10832.1| germin-like protein [Arabidopsis thaliana] gi|15... 44 0.001
gb|AAF34811.1| oxalate oxidase [Triticum aestivum] 44 0.001
gb|AAF26795.1| germin-like protein [Arabidopsis thaliana] gi|152... 43 0.002
emb|CAA63023.1| germin type2 [Arabidopsis thaliana] gi|2129594|p... 42 0.003
gb|AAM98218.1| germin-like protein GLP2a copy1 [Arabidopsis thal... 42 0.003
dbj|BAB10834.1| germin-like protein [Arabidopsis thaliana] gi|28... 42 0.003
dbj|BAB09373.1| germin-like protein [Arabidopsis thaliana] gi|28... 42 0.003
gb|AAF26793.1| germin-like protein [Arabidopsis thaliana] gi|283... 42 0.004
gb|AAG00426.1| germin B [Hordeum vulgare] 42 0.004
dbj|BAA78563.1| germin-like protein [Atriplex lentiformis] 42 0.006
gb|AAF26796.1| germin-like protein [Arabidopsis thaliana] gi|489... 41 0.007
ref|XP_480452.1| putative germin protein type 1 [Oryza sativa (j... 41 0.007
>gb|AAG00428.1| germin D [Hordeum vulgare]
Length = 225
Score = 49.7 bits (117), Expect = 2e-05
Identities = 25/38 (65%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 3 ILYLLVSILALASSIAFAYDPSPLQDFCVA-IKDPKDG 39
+LYLL +LALAS A AYDPSPLQDFC+A +K P +G
Sbjct: 7 LLYLLTGLLALASWHATAYDPSPLQDFCIADMKSPVNG 44
>dbj|BAB10836.1| germin-like protein [Arabidopsis thaliana]
gi|15241653|ref|NP_198731.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18202902|sp|Q9FIC6|GL1H_ARATH Germin-like protein
subfamily 1 member 17 precursor
Length = 221
Score = 48.1 bits (113), Expect = 6e-05
Identities = 23/34 (67%), Positives = 29/34 (84%), Gaps = 1/34 (2%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
+L+++ AL + IA AYDPSPLQDFCVAI DPK+G
Sbjct: 8 ILITLSALVT-IAKAYDPSPLQDFCVAIDDPKNG 40
>dbj|BAB09372.1| oxalate oxidase (germin protein)-like protein [Arabidopsis
thaliana] gi|15241660|ref|NP_198734.1| germin-like
protein, putative [Arabidopsis thaliana]
gi|18202907|sp|Q9FL89|GL1J_ARATH Germin-like protein
subfamily 1 member 19 precursor
Length = 221
Score = 48.1 bits (113), Expect = 6e-05
Identities = 23/34 (67%), Positives = 29/34 (84%), Gaps = 1/34 (2%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
+L+++ AL + IA AYDPSPLQDFCVAI DPK+G
Sbjct: 8 ILITLSALVT-IAKAYDPSPLQDFCVAIDDPKNG 40
>gb|AAB51572.1| germin-like protein [Arabidopsis thaliana]
gi|18202454|sp|P92997|GL1D_ARATH Germin-like protein
subfamily 1 member 13 precursor
Length = 222
Score = 47.8 bits (112), Expect = 8e-05
Identities = 22/34 (64%), Positives = 27/34 (78%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
+L+++ AL S A AYDPSPLQDFCVAI D K+G
Sbjct: 8 ILITLSALVISFAEAYDPSPLQDFCVAIDDLKNG 41
>dbj|BAB10833.1| germin-like protein [Arabidopsis thaliana]
gi|15241638|ref|NP_198728.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18202904|sp|Q9FIC9|GL1F_ARATH Germin-like protein
subfamily 1 member 15 precursor
Length = 221
Score = 47.4 bits (111), Expect = 1e-04
Identities = 23/34 (67%), Positives = 28/34 (81%), Gaps = 1/34 (2%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
+L++ AL + IA AYDPSPLQDFCVAI DPK+G
Sbjct: 8 ILITFWALVT-IAKAYDPSPLQDFCVAIDDPKNG 40
>ref|XP_480453.1| germin protein type 1 [Oryza sativa (japonica cultivar-group)]
gi|40253834|dbj|BAD05770.1| germin protein type 1
[Oryza sativa (japonica cultivar-group)]
gi|40253794|dbj|BAD05731.1| germin protein type 1
[Oryza sativa (japonica cultivar-group)]
gi|2655285|gb|AAC04832.1| germin-like protein 1 [Oryza
sativa] gi|7447333|pir||T02239 germin protein type 1 -
rice
Length = 224
Score = 47.0 bits (110), Expect = 1e-04
Identities = 24/34 (70%), Positives = 28/34 (81%), Gaps = 1/34 (2%)
Query: 4 LYLLVSILALASSIAFAYDPSPLQDFCVA-IKDP 36
LYLL ++LALAS A A+DPSPLQDFCVA +K P
Sbjct: 7 LYLLAALLALASWQAIAFDPSPLQDFCVADMKSP 40
>gb|AAL05886.1| germin-like protein [Musa acuminata]
Length = 229
Score = 44.7 bits (104), Expect = 7e-04
Identities = 21/30 (70%), Positives = 25/30 (83%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKD 35
L+ ++LALASS A A+DPSPLQDFCVA D
Sbjct: 7 LIAALLALASSHALAFDPSPLQDFCVADYD 36
>gb|AAF26097.1| germin-like protein [Arabidopsis thaliana]
gi|6671962|gb|AAF23221.1| germin-like protein
[Arabidopsis thaliana] gi|15230587|ref|NP_187246.1|
germin-like protein, putative [Arabidopsis thaliana]
gi|18203443|sp|Q9SFF9|GL17_ARATH Germin-like protein
subfamily 1 member 7 precursor
Length = 229
Score = 44.3 bits (103), Expect = 9e-04
Identities = 20/35 (57%), Positives = 24/35 (68%)
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVAIKD 35
++ L +LALASS YDPSPLQDFCVA+ D
Sbjct: 5 LRFLVAKAILLALASSFVSCYDPSPLQDFCVAVDD 39
>dbj|BAB10832.1| germin-like protein [Arabidopsis thaliana]
gi|15241636|ref|NP_198727.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18202905|sp|Q9FID0|GL1E_ARATH Germin-like protein
subfamily 1 member 14 precursor
Length = 222
Score = 43.9 bits (102), Expect = 0.001
Identities = 21/34 (61%), Positives = 26/34 (75%)
Query: 6 LLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
+L+++ AL S A A DPSPLQDFCVAI D K+G
Sbjct: 8 ILITLSALVISFAEANDPSPLQDFCVAIGDLKNG 41
>gb|AAF34811.1| oxalate oxidase [Triticum aestivum]
Length = 221
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/34 (67%), Positives = 26/34 (75%), Gaps = 1/34 (2%)
Query: 4 LYLLVSILALASSIAFAYDPSPLQDFCVA-IKDP 36
L+LL +LAL S A AYDPSPLQDFCVA +K P
Sbjct: 2 LFLLAVLLALVSWQATAYDPSPLQDFCVADMKSP 35
>gb|AAF26795.1| germin-like protein [Arabidopsis thaliana]
gi|15229243|ref|NP_187068.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18203274|sp|Q9M8X4|GL14_ARATH Germin-like protein
subfamily 1 member 4 precursor
Length = 222
Score = 43.1 bits (100), Expect = 0.002
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVAIKD 35
++ L + +LALASS + YDPSPLQD+CVA +
Sbjct: 5 LQFLLAKIILLALASSFVYCYDPSPLQDYCVATNE 39
>emb|CAA63023.1| germin type2 [Arabidopsis thaliana] gi|2129594|pir||S71254 germin
type 2 - Arabidopsis thaliana
Length = 222
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/29 (68%), Positives = 22/29 (74%)
Query: 9 SILALASSIAFAYDPSPLQDFCVAIKDPK 37
+I+AL S AYDPSPLQDFCVAI D K
Sbjct: 11 AIIALVLSFVNAYDPSPLQDFCVAIDDLK 39
>gb|AAM98218.1| germin-like protein GLP2a copy1 [Arabidopsis thaliana]
gi|9758844|dbj|BAB09370.1| oxalate oxidase (germin
protein)-like protein [Arabidopsis thaliana]
gi|22327459|ref|NP_198732.2| germin-like protein
(GLP2a) (GLP5a) [Arabidopsis thaliana]
gi|25084126|gb|AAN72181.1| germin-like protein GLP2a
copy1 [Arabidopsis thaliana]
gi|18202456|sp|P92999|GL1I_ARATH Germin-like protein
subfamily 1 member 18 precursor (GLP2a copy 1)
Length = 222
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/29 (68%), Positives = 22/29 (74%)
Query: 9 SILALASSIAFAYDPSPLQDFCVAIKDPK 37
+I+AL S AYDPSPLQDFCVAI D K
Sbjct: 11 AIIALVLSFVNAYDPSPLQDFCVAIDDLK 39
>dbj|BAB10834.1| germin-like protein [Arabidopsis thaliana]
gi|28058959|gb|AAO29972.1| germin-like protein
[Arabidopsis thaliana] gi|17065442|gb|AAL32875.1|
germin-like protein [Arabidopsis thaliana]
gi|15241640|ref|NP_198729.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18202903|sp|Q9FIC8|GL1G_ARATH Germin-like protein
subfamily 1 member 16 precursor
Length = 222
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/29 (68%), Positives = 22/29 (74%)
Query: 9 SILALASSIAFAYDPSPLQDFCVAIKDPK 37
+I+AL S AYDPSPLQDFCVAI D K
Sbjct: 11 AIIALVLSFVNAYDPSPLQDFCVAIDDLK 39
>dbj|BAB09373.1| germin-like protein [Arabidopsis thaliana]
gi|28827516|gb|AAO50602.1| putative germin-like protein
(GLP2a) copy2 [Arabidopsis thaliana]
gi|28393191|gb|AAO42026.1| putative germin-like protein
(GLP2a) copy2 [Arabidopsis thaliana]
gi|15241662|ref|NP_198735.1| germin-like protein (GER2)
[Arabidopsis thaliana] gi|1755162|gb|AAB51570.1|
germin-like protein [Arabidopsis thaliana]
gi|18202453|sp|P92996|GL1K_ARATH Germin-like protein
subfamily 1 member 20 precursor (GLP2a copy 2) (Germin
type 2) (GLP2b) (At-GERM2) (AtGER2)
Length = 222
Score = 42.4 bits (98), Expect = 0.003
Identities = 20/29 (68%), Positives = 22/29 (74%)
Query: 9 SILALASSIAFAYDPSPLQDFCVAIKDPK 37
+I+AL S AYDPSPLQDFCVAI D K
Sbjct: 11 AIIALVLSFVNAYDPSPLQDFCVAIDDLK 39
>gb|AAF26793.1| germin-like protein [Arabidopsis thaliana]
gi|28394105|gb|AAO42460.1| putative germin protein
[Arabidopsis thaliana] gi|27754530|gb|AAO22712.1|
putative germin protein [Arabidopsis thaliana]
gi|15229247|ref|NP_187070.1| germin-like protein,
putative [Arabidopsis thaliana]
gi|18203276|sp|Q9M8X6|GL16_ARATH Germin-like protein
subfamily 1 member 6 precursor
Length = 227
Score = 42.0 bits (97), Expect = 0.004
Identities = 23/59 (38%), Positives = 32/59 (53%), Gaps = 13/59 (22%)
Query: 1 MKILYLLVSILALASSIAFAYDPSPLQDFCVA-------------IKDPKDGDYSDLTH 46
+++L V +LALA+S YDP+PLQDFCVA KDPK +D ++
Sbjct: 6 LRLLVTQVILLALATSFVSCYDPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSY 64
>gb|AAG00426.1| germin B [Hordeum vulgare]
Length = 226
Score = 42.0 bits (97), Expect = 0.004
Identities = 19/29 (65%), Positives = 23/29 (78%)
Query: 4 LYLLVSILALASSIAFAYDPSPLQDFCVA 32
L+ L ++L LAS A AYDPSPLQDFC+A
Sbjct: 7 LFCLSALLVLASRQATAYDPSPLQDFCIA 35
>dbj|BAA78563.1| germin-like protein [Atriplex lentiformis]
Length = 224
Score = 41.6 bits (96), Expect = 0.006
Identities = 21/38 (55%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 2 KILYLLVSILALASSIAFAYDPSPLQDFCVAIKDPKDG 39
KIL L +LA+A+ +A+A DPS LQDFCV + +P DG
Sbjct: 5 KILSCLC-LLAVANYVAYASDPSQLQDFCVGVTNPIDG 41
>gb|AAF26796.1| germin-like protein [Arabidopsis thaliana]
gi|48958485|gb|AAT47795.1| At3g04170 [Arabidopsis
thaliana] gi|15229241|ref|NP_187067.1| germin-like
protein, putative [Arabidopsis thaliana]
gi|18203273|sp|Q9M8X3|GL13_ARATH Germin-like protein
subfamily 1 member 3 precursor
Length = 227
Score = 41.2 bits (95), Expect = 0.007
Identities = 17/28 (60%), Positives = 22/28 (77%)
Query: 8 VSILALASSIAFAYDPSPLQDFCVAIKD 35
+ +LALASS YDPSPLQD+CVA+ +
Sbjct: 12 IILLALASSFVSCYDPSPLQDYCVAVPE 39
>ref|XP_480452.1| putative germin protein type 1 [Oryza sativa (japonica
cultivar-group)] gi|40253833|dbj|BAD05769.1| putative
germin protein type 1 [Oryza sativa (japonica
cultivar-group)] gi|40253793|dbj|BAD05730.1| putative
germin protein type 1 [Oryza sativa (japonica
cultivar-group)] gi|2655287|gb|AAC04833.1| germin-like
protein 2 [Oryza sativa] gi|7447338|pir||T02241
probable germin protein type 2 - rice
Length = 225
Score = 41.2 bits (95), Expect = 0.007
Identities = 21/30 (70%), Positives = 24/30 (80%), Gaps = 1/30 (3%)
Query: 4 LYLLVSILALAS-SIAFAYDPSPLQDFCVA 32
L+LL S+L LAS A A+DPSPLQDFCVA
Sbjct: 6 LFLLASLLVLASWQQAIAFDPSPLQDFCVA 35
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.328 0.145 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,854,273
Number of Sequences: 2540612
Number of extensions: 2913250
Number of successful extensions: 8497
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8434
Number of HSP's gapped (non-prelim): 73
length of query: 59
length of database: 863,360,394
effective HSP length: 35
effective length of query: 24
effective length of database: 774,438,974
effective search space: 18586535376
effective search space used: 18586535376
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140721.8