BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140721.10 + phase: 0 /pseudo
(329 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64307.1| nuclear matrix protein 1 [Arabidopsis thaliana] 405 e-111
ref|NP_568354.1| expressed protein [Arabidopsis thaliana] 402 e-110
gb|AAK83083.1| nuclear matrix protein 1 [Lycopersicon esculentum] 393 e-108
emb|CAC01906.1| hypothetical protein [Arabidopsis thaliana] gi|1... 380 e-104
dbj|BAD82011.1| putative nuclear matrix protein 1 [Oryza sativa ... 344 2e-93
gb|AAK83084.1| nuclear matrix protein 1 [Zea mays] 335 1e-90
ref|NP_915670.1| putative nuclear matrix protein [Oryza sativa (... 316 7e-85
dbj|BAD94397.1| hypothetical protein [Arabidopsis thaliana] 224 2e-57
gb|AAM21170.1| nuclear matrix protein 1 [Triticum aestivum] 204 3e-51
gb|AAM21171.1| nuclear matrix protein 1 [Triticum aestivum] 86 2e-15
gb|AAM61758.1| nuclear matrix protein 1 [Phaseolus lunatus] 79 2e-13
gb|AAM61759.1| nuclear matrix protein 1 [Hordeum vulgare] 74 8e-12
ref|XP_471577.1| OSJNBa0065J03.22 [Oryza sativa (japonica cultiv... 40 0.073
ref|NP_070387.1| chromosome segregation protein (smc1) [Archaeog... 35 3.1
ref|XP_629314.1| hypothetical protein DDB0191770 [Dictyostelium ... 35 4.0
emb|CAE74227.1| Hypothetical protein CBG21911 [Caenorhabditis br... 35 4.0
ref|XP_517890.1| PREDICTED: similar to Dmx-like 1 [Pan troglodytes] 34 6.8
ref|YP_193796.1| fumarate reductase flavoprotein [Lactobacillus ... 34 6.8
ref|NP_082909.1| UCH37-interacting protein 1 isoform 1 [Mus musc... 33 8.9
emb|CAG31581.1| hypothetical protein [Gallus gallus] 33 8.9
>gb|AAM64307.1| nuclear matrix protein 1 [Arabidopsis thaliana]
Length = 329
Score = 405 bits (1040), Expect = e-111
Identities = 223/339 (65%), Positives = 258/339 (75%), Gaps = 21/339 (6%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MA+KQME IQKKLG+L+YPRANA AQSLLFAGMERYAL EWLFF+LLGDKSPFSQQNLQG
Sbjct: 1 MAAKQMEEIQKKLGLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
DA RDEET RIQYLAEIAKFLGIT TVD +AIQ H +D L N+V
Sbjct: 61 DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEML----------RNIV 110
Query: 121 CIFVSIVLTSR*PRTYT**IL--------LQKNRHKYFLKNVNCFPQMFRFSPY--IP*V 170
+ + + + + + + + + F + FP + +P V
Sbjct: 111 DLVEASLFSDNQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDV 170
Query: 171 AELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMI 230
+ELE+KL+EQ+KIL NLQQKVDDLA+KHAYNPDEEYTEVESQLRA LESFLETAR FN I
Sbjct: 171 SELETKLSEQAKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTI 230
Query: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSET-S 289
YTKEIRPWTHMMEVPQLHGFGPAANRLLEAY MLLKFLGNL+NLRDSHAAL+ GSS T +
Sbjct: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVA 290
Query: 290 GGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKM 328
G PSSV+RI+S+CE+ +TV+NRDLGILSASIARE GE++
Sbjct: 291 GEPSSVTRIVSDCEAALTVLNRDLGILSASIAREQGERL 329
>ref|NP_568354.1| expressed protein [Arabidopsis thaliana]
Length = 329
Score = 402 bits (1032), Expect = e-110
Identities = 222/339 (65%), Positives = 257/339 (75%), Gaps = 21/339 (6%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MA+KQME IQKKL +L+YPRANA AQSLLFAGMERYAL EWLFF+LLGDKSPFSQQNLQG
Sbjct: 1 MAAKQMEEIQKKLRLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
DA RDEET RIQYLAEIAKFLGIT TVD +AIQ H +D L N+V
Sbjct: 61 DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEML----------RNIV 110
Query: 121 CIFVSIVLTSR*PRTYT**IL--------LQKNRHKYFLKNVNCFPQMFRFSPY--IP*V 170
+ + + + + + + + + F + FP + +P V
Sbjct: 111 DLVEASLFSDNQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDV 170
Query: 171 AELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMI 230
+ELE+KL+EQ+KIL NLQQKVDDLA+KHAYNPDEEYTEVESQLRA LESFLETAR FN I
Sbjct: 171 SELETKLSEQAKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTI 230
Query: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSET-S 289
YTKEIRPWTHMMEVPQLHGFGPAANRLLEAY MLLKFLGNL+NLRDSHAAL+ GSS T +
Sbjct: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVA 290
Query: 290 GGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKM 328
G PSSV+RI+S+CE+ +TV+NRDLGILSASIARE GE++
Sbjct: 291 GEPSSVTRIVSDCEAALTVLNRDLGILSASIAREQGERL 329
>gb|AAK83083.1| nuclear matrix protein 1 [Lycopersicon esculentum]
Length = 331
Score = 393 bits (1010), Expect = e-108
Identities = 216/341 (63%), Positives = 254/341 (74%), Gaps = 23/341 (6%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MA+KQME IQKKL LNYPRANA AQSLLFAGMERYAL EWLFF+LLGDKSPFSQQNLQG
Sbjct: 1 MAAKQMEEIQKKLATLNYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
DA+DRDEET+RIQYLAEIAKFLGITTTVD +AIQ +D L L+
Sbjct: 61 DAVDRDEETSRIQYLAEIAKFLGITTTVDPEAIQGRGSYEDRMEML-----------RLI 109
Query: 121 CIFVSIVLTSR*P---------RTYT**ILLQKNRHKYFLKNVNCFPQMFRFSPY--IP* 169
V + + P + + + + + F + FP + +P
Sbjct: 110 VDLVEASMYADNPEWSVDEQVAKDIQLIDAIAEKQSQIFSEECKLFPADVQIQSIYPLPD 169
Query: 170 VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNM 229
+++LE +L++QS LL+LQ+ VDDLASKH YNPDEEY +VE++LR HLESFL+TARTFN
Sbjct: 170 ISDLEKQLSDQSNRLLSLQEMVDDLASKHPYNPDEEYVDVEAKLRGHLESFLDTARTFNT 229
Query: 230 IYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSET- 288
IYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKML KFLGNL+NLRDSHAA+A GSSET
Sbjct: 230 IYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLWKFLGNLKNLRDSHAAVAAGSSETV 289
Query: 289 SGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS 329
+G PSSV+RIISECE+ +T++NRDL ILSASIARE GE +S
Sbjct: 290 AGEPSSVTRIISECETALTLLNRDLAILSASIARERGEDIS 330
>emb|CAC01906.1| hypothetical protein [Arabidopsis thaliana] gi|11346184|pir||T51466
hypothetical protein K10A8_100 - Arabidopsis thaliana
Length = 383
Score = 380 bits (977), Expect = e-104
Identities = 222/374 (59%), Positives = 255/374 (67%), Gaps = 55/374 (14%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MA+KQME IQKKL +L+YPRANA AQSLLFAGMERYAL EWLFF+LLGDKSPFSQQNLQG
Sbjct: 1 MAAKQMEEIQKKLRLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
DA RDEET RIQYLAEIAKFLGIT TVD +AIQ H +D L N+V
Sbjct: 61 DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEML----------RNIV 110
Query: 121 CIFVSIVLTSR*PRTYT**IL--------LQKNRHKYFLKNVNCFPQMFRFSPY--IP*V 170
+ + + + + + + + + F + FP + +P V
Sbjct: 111 DLVEASLFSDNQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDV 170
Query: 171 AELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMI 230
+ELE+KL+EQ+KIL NLQQKVDDLA+KHAYNPDEEYTEVESQLRA LESFLETAR FN I
Sbjct: 171 SELETKLSEQAKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTI 230
Query: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLK------------------------ 266
YTKEIRPWTHMMEVPQLHGFGPAANRLLEAY MLLK
Sbjct: 231 YTKEIRPWTHMMEVPQLHGFGPAANRLLEAYNMLLKVPHCLLLSVYLVVSTILSPYNLYF 290
Query: 267 ----------FLGNLQNLRDSHAALAFGSSET-SGGPSSVSRIISECESEMTVINRDLGI 315
FLGNL+NLRDSHAAL+ GSS T +G PSSV+RI+S+CE+ +TV+NRDLGI
Sbjct: 291 DSDTQIVWQQFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIVSDCEAALTVLNRDLGI 350
Query: 316 LSASIAREHGEKMS 329
LSASIARE K S
Sbjct: 351 LSASIAREQATKDS 364
>dbj|BAD82011.1| putative nuclear matrix protein 1 [Oryza sativa (japonica
cultivar-group)] gi|56784211|dbj|BAD81706.1| putative
nuclear matrix protein 1 [Oryza sativa (japonica
cultivar-group)]
Length = 331
Score = 344 bits (883), Expect = 2e-93
Identities = 188/343 (54%), Positives = 236/343 (67%), Gaps = 28/343 (8%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MASKQME IQ+KL +L YPRANA AQSLLFAG+ERY L EWLFFRLLGD+SPF+QQN QG
Sbjct: 1 MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
D+LDRDEE +RIQ+LAEIA FLGIT +VDT+AIQ D+ + L+
Sbjct: 61 DSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDER--------------VELL 106
Query: 121 CIFVSIVLTS------------R*PRTYT**ILLQKNRHKYFLKNVNCFPQMFRFSPY-- 166
C+ V +V S + + + + + + F + FP +
Sbjct: 107 CLIVDLVEASCYADNPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYP 166
Query: 167 IP*VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETART 226
+P + ELE KL+E +K + NLQ V +LASK+ YNP+E+Y E E +LR HL+SFLET ++
Sbjct: 167 LPDITELELKLSEYTKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKS 226
Query: 227 FNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSS 286
FNMIYTKEI PWTHMMEVPQLHGFGPAANRLLEAY LLKFL NL++LRDS+AA+A GS
Sbjct: 227 FNMIYTKEIHPWTHMMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRDSYAAMAAGSL 286
Query: 287 ETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEKMS 329
S PSSV++IIS+CES +T +N L ILS S+ARE GE ++
Sbjct: 287 SASNEPSSVTKIISDCESALTFLNNSLSILSTSVAREQGETLN 329
>gb|AAK83084.1| nuclear matrix protein 1 [Zea mays]
Length = 328
Score = 335 bits (859), Expect = 1e-90
Identities = 185/339 (54%), Positives = 230/339 (67%), Gaps = 28/339 (8%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFRLLGDKSPFSQQNLQG 60
MASKQME IQ+KL +L YPRANA AQSLLFAG+ERY L EWLFFRLLGD+SPF+QQN QG
Sbjct: 1 MASKQMEEIQRKLSLLEYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG 60
Query: 61 DALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLV 120
D+LDRDEE RIQ+LAEIA FLGIT + DT+AIQ Y + L+
Sbjct: 61 DSLDRDEENNRIQHLAEIANFLGITPSADTEAIQGR--------------GSYEERVELL 106
Query: 121 CIFVSIVLTS------------R*PRTYT**ILLQKNRHKYFLKNVNCFPQMFRFSPY-- 166
+ V +V S + + + + + + F + FP +
Sbjct: 107 HLIVDLVEASCYADNPEWSVDKQLEKDVQLVDSIAEKQAQIFSEECKLFPADVQIQSIYP 166
Query: 167 IP*VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETART 226
+P +AELE KL+E +K + NLQQ V +LASK+ YNP+E+Y E E +LR +L+SFLET ++
Sbjct: 167 LPDIAELELKLSEYTKKMSNLQQMVQELASKYDYNPNEDYAETELKLREYLQSFLETVKS 226
Query: 227 FNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSS 286
FN IYTKEI PWTHMMEVPQLHGFGPAANRLLEAY LLKFLGNL++LRDS+ A+A GS
Sbjct: 227 FNTIYTKEIHPWTHMMEVPQLHGFGPAANRLLEAYNTLLKFLGNLRSLRDSYTAMAAGSL 286
Query: 287 ETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHG 325
S PSSV++IIS+CES +T +N L ILS S+ARE G
Sbjct: 287 SASNEPSSVTKIISDCESALTFLNHSLSILSTSVAREQG 325
>ref|NP_915670.1| putative nuclear matrix protein [Oryza sativa (japonica
cultivar-group)]
Length = 383
Score = 316 bits (809), Expect = 7e-85
Identities = 188/395 (47%), Positives = 236/395 (59%), Gaps = 80/395 (20%)
Query: 1 MASKQMEVIQKKLGMLNYPRANASAQSLLFAGMERYALFEWLFFR--------------- 45
MASKQME IQ+KL +L YPRANA AQSLLFAG+ERY L EWLFFR
Sbjct: 1 MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRYAATHATFPISASQS 60
Query: 46 -----------------------LLGDKSPFSQQNLQGDALDRDEETARIQYLAEIAKFL 82
LLGD+SPF+QQN QGD+LDRDEE +RIQ+LAEIA FL
Sbjct: 61 ARLAAQLRSQLEIEGFVFSLLRRLLGDRSPFTQQNWQGDSLDRDEENSRIQHLAEIANFL 120
Query: 83 GITTTVDTDAIQTHLLNDDLFFFL*LW*CRYGIGINLVCIFVSIVLTS------------ 130
GIT +VDT+AIQ D+ + L+C+ V +V S
Sbjct: 121 GITPSVDTEAIQGRGSYDER--------------VELLCLIVDLVEASCYADNPEWSVDE 166
Query: 131 R*PRTYT**ILLQKNRHKYFLKNVNCFPQMFRFSPY--IP*VAELESKLTEQSKILLNLQ 188
+ + + + + + F + FP + +P + ELE KL+E +K + NLQ
Sbjct: 167 QLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDITELELKLSEYTKKMSNLQ 226
Query: 189 QKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMIYTKEIRPWTHMMEVPQLH 248
V +LASK+ YNP+E+Y E E +LR HL+SFLET ++FNMIYTKEI PWTHMMEVPQLH
Sbjct: 227 LMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTHMMEVPQLH 286
Query: 249 GFGPAANRLLEAYKMLLK--------------FLGNLQNLRDSHAALAFGSSETSGGPSS 294
GFGPAANRLLEAY LLK FL NL++LRDS+AA+A GS S PSS
Sbjct: 287 GFGPAANRLLEAYNTLLKLCAVFLLVSTVFCLFLSNLRSLRDSYAAMAAGSLSASNEPSS 346
Query: 295 VSRIISECESEMTVINRDLGILSASIAREHGEKMS 329
V++IIS+CES +T +N L ILS S+ARE GE ++
Sbjct: 347 VTKIISDCESALTFLNNSLSILSTSVAREQGETLN 381
>dbj|BAD94397.1| hypothetical protein [Arabidopsis thaliana]
Length = 132
Score = 224 bits (572), Expect = 2e-57
Identities = 111/132 (84%), Positives = 122/132 (92%), Gaps = 1/132 (0%)
Query: 198 HAYNPDEEYTEVESQLRAHLESFLETARTFNMIYTKEIRPWTHMMEVPQLHGFGPAANRL 257
HAYNPDEEYTEVESQLRA LESFLETAR FN IYTKEIRPWTHMMEVPQLHGFGPAANRL
Sbjct: 1 HAYNPDEEYTEVESQLRARLESFLETARAFNTIYTKEIRPWTHMMEVPQLHGFGPAANRL 60
Query: 258 LEAYKMLLKFLGNLQNLRDSHAALAFGSSET-SGGPSSVSRIISECESEMTVINRDLGIL 316
LEAY MLLKFLGNL+NLRDSHAAL+ GSS T +G PSSV+RI+S+CE+ +TV+NRDLGIL
Sbjct: 61 LEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIVSDCEAALTVLNRDLGIL 120
Query: 317 SASIAREHGEKM 328
SASIARE GE++
Sbjct: 121 SASIAREQGERL 132
>gb|AAM21170.1| nuclear matrix protein 1 [Triticum aestivum]
Length = 146
Score = 204 bits (519), Expect = 3e-51
Identities = 98/143 (68%), Positives = 117/143 (81%)
Query: 186 NLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMIYTKEIRPWTHMMEVP 245
NLQQ V +LASK+ YNP+E+Y E E +LR HL+SFLET ++FNMIYTKEI PWTHMMEVP
Sbjct: 4 NLQQMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTHMMEVP 63
Query: 246 QLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSETSGGPSSVSRIISECESE 305
QLHGFGPAANRLLEAY LLKFLGNL++LRDS+ A+A GS S PSSV++IIS+CES
Sbjct: 64 QLHGFGPAANRLLEAYNTLLKFLGNLRSLRDSYTAMAAGSLSNSSEPSSVTKIISDCESA 123
Query: 306 MTVINRDLGILSASIAREHGEKM 328
+T +N L ILS S+ARE GE +
Sbjct: 124 LTFLNNSLAILSTSVAREQGETL 146
>gb|AAM21171.1| nuclear matrix protein 1 [Triticum aestivum]
Length = 122
Score = 85.5 bits (210), Expect = 2e-15
Identities = 44/65 (67%), Positives = 52/65 (79%)
Query: 42 LFFRLLGDKSPFSQQNLQGDALDRDEETARIQYLAEIAKFLGITTTVDTDAIQTHLLNDD 101
LFFRLLGD+SPF+QQN Q D+LDRDEE +RIQ+LAEIA FLGIT +VDT+AIQ D+
Sbjct: 1 LFFRLLGDRSPFTQQNWQVDSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDE 60
Query: 102 LFFFL 106
FL
Sbjct: 61 RVEFL 65
>gb|AAM61758.1| nuclear matrix protein 1 [Phaseolus lunatus]
Length = 123
Score = 79.0 bits (193), Expect = 2e-13
Identities = 38/45 (84%), Positives = 43/45 (95%)
Query: 167 IP*VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVES 211
+P V+ELESK +EQSKILLNLQQKVDDLASKHAY+PDEEYTEVE+
Sbjct: 78 LPDVSELESKFSEQSKILLNLQQKVDDLASKHAYHPDEEYTEVEA 122
>gb|AAM61759.1| nuclear matrix protein 1 [Hordeum vulgare]
Length = 66
Score = 73.6 bits (179), Expect = 8e-12
Identities = 34/63 (53%), Positives = 47/63 (73%)
Query: 266 KFLGNLQNLRDSHAALAFGSSETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHG 325
KFLGNL++LRDS+ +A GS S PSS+++IIS+CES +T +N L ILS S+AR+ G
Sbjct: 4 KFLGNLRSLRDSYTTMAAGSLSNSSEPSSITKIISDCESVLTFLNNSLAILSTSVARDQG 63
Query: 326 EKM 328
E +
Sbjct: 64 ETL 66
>ref|XP_471577.1| OSJNBa0065J03.22 [Oryza sativa (japonica cultivar-group)]
gi|38568052|emb|CAE75907.1| OSJNBa0065J03.22 [Oryza
sativa (japonica cultivar-group)]
Length = 274
Score = 40.4 bits (93), Expect = 0.073
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 150 FLKNVNCFPQMFRFSPYIP*VAELESKLTEQSKI-LLNLQQKVDDLASKHAYNPDEEYTE 208
F++ +N F +M S ++P V L+ + ++ +L L + +++Y+ E +
Sbjct: 94 FIEVINLFGRML-ISSFVPSVNMLQGLVISYRELGVLRLGKATHGYMIRNSYDAQSENSA 152
Query: 209 VES---QLRAHLESFLETARTFNMIYTKEIRPWTHMMEVPQLHGFG 251
+E+ +L A S R F+ I+ K+I W+ M+E +HG+G
Sbjct: 153 LETSIVKLYASCGSINSAQRCFDSIHQKDIVAWSSMIEAYTIHGYG 198
>ref|NP_070387.1| chromosome segregation protein (smc1) [Archaeoglobus fulgidus DSM
4304] gi|2649004|gb|AAB89690.1| chromosome segregation
protein (smc1) [Archaeoglobus fulgidus DSM 4304]
gi|7446602|pir||E69444 chromosome segregation protein
(smc1) homolog - Archaeoglobus fulgidus
Length = 1156
Score = 35.0 bits (79), Expect = 3.1
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 172 ELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNMIY 231
EL SK+ E + + L +K+++LA+K + DE E++S++ L S LE+ R Y
Sbjct: 248 ELTSKIPEINARIAELNEKINELAAKISELGDERSAEIQSRI-LELSSELESLRRAERFY 306
Query: 232 TKEIR 236
E +
Sbjct: 307 LDEAK 311
>ref|XP_629314.1| hypothetical protein DDB0191770 [Dictyostelium discoideum]
gi|60462695|gb|EAL60897.1| hypothetical protein
DDB0191770 [Dictyostelium discoideum]
Length = 2007
Score = 34.7 bits (78), Expect = 4.0
Identities = 32/131 (24%), Positives = 59/131 (44%), Gaps = 8/131 (6%)
Query: 206 YTEVESQLRAHLESFLETARTFNMIYTK---EIRPWTHMMEVPQLHGFGPAANRLLEAYK 262
+ E+ + + + F+ T + ++++ + + +L F A L E Y
Sbjct: 211 HPEIARLSKPNQQQFIRMVETISRVFSQLDQYLENYREQFTNNELTYFETALKILREEYL 270
Query: 263 MLLKFLGNLQNLRDSHAALAFGSS----ETSGGPSSVSRIISECESEMTVINRDLGILSA 318
+F + + + AA A +S +S PSS S II ESE+ NRD+ IL
Sbjct: 271 TNPEFRKSFAKDQAADAAAAAATSTAAANSSSSPSSSSSIIGLTESEVQQANRDVEILLT 330
Query: 319 SIARE-HGEKM 328
++ ++ H +KM
Sbjct: 331 NLLKDLHTKKM 341
>emb|CAE74227.1| Hypothetical protein CBG21911 [Caenorhabditis briggsae]
Length = 1938
Score = 34.7 bits (78), Expect = 4.0
Identities = 40/143 (27%), Positives = 67/143 (45%), Gaps = 11/143 (7%)
Query: 170 VAELESKLTEQSKILLNLQQKVDDLASK-HAYNPDEEYTEVES-QLRAHLESF---LETA 224
+A LE K KI+ + ++KVDD+ + A D T E +LR+ +++ +ET
Sbjct: 1446 IASLEKKQRAFDKIVDDWKRKVDDIQKEIDATTRDSRNTSTEVFKLRSSMDNLSEQIETL 1505
Query: 225 RTFNMIYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQN-LRDSHAALAF 283
R N IY++EIR Q+ G + ++ + L + LQ+ L ++ AAL
Sbjct: 1506 RRENKIYSQEIRDINE-----QITQGGRTYQEVHKSVRRLEQEKDELQHALDEAEAALEA 1560
Query: 284 GSSETSGGPSSVSRIISECESEM 306
S+ V +I SE E +
Sbjct: 1561 EESKVLRLQIEVQQIRSEIEKRI 1583
>ref|XP_517890.1| PREDICTED: similar to Dmx-like 1 [Pan troglodytes]
Length = 2823
Score = 33.9 bits (76), Expect = 6.8
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 15/95 (15%)
Query: 174 ESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQL-----------RAHLESFLE 222
+ K + IL N +KVD S+ A+ P+E Y+ ++ RA+L+S
Sbjct: 831 KKKSLGKDSILSNADEKVDTKLSEAAWQPEEHYSSSPEKILSPFSQKYQACRANLQSTSR 890
Query: 223 TARTFNMIYTKEIRPWTHMMEVPQLHGFGPAANRL 257
M+Y++E+ H+ E ++ P+A L
Sbjct: 891 LTLFSEMVYSQEL----HLPEGVEIISIKPSAGHL 921
>ref|YP_193796.1| fumarate reductase flavoprotein [Lactobacillus acidophilus NCFM]
gi|58254528|gb|AAV42765.1| fumarate reductase
flavoprotein [Lactobacillus acidophilus NCFM]
Length = 460
Score = 33.9 bits (76), Expect = 6.8
Identities = 17/45 (37%), Positives = 23/45 (50%)
Query: 283 FGSSETSGGPSSVSRIISECESEMTVINRDLGILSASIAREHGEK 327
+ + E SGG +RI +E + R GI A AREHG+K
Sbjct: 416 YAAGEVSGGLHGNNRIGGNSIAETVIFGRQAGIQMAKYAREHGKK 460
>ref|NP_082909.1| UCH37-interacting protein 1 isoform 1 [Mus musculus]
gi|19343855|gb|AAH25464.1| UCH37-interacting protein 1,
isoform 1 [Mus musculus] gi|13876578|gb|AAK38738.1|
UCH37-interacting protein 1 [Mus musculus]
Length = 364
Score = 33.5 bits (75), Expect = 8.9
Identities = 28/124 (22%), Positives = 51/124 (40%), Gaps = 6/124 (4%)
Query: 170 VAELESKLTEQSKILLNLQQKVDDLASKHAYNPDEEYTEVESQLRAHLESFLETARTFNM 229
VA+L +L E + L L+ D ++H D + ++ +LR + F + F
Sbjct: 213 VADLARQLQESATKLQTLR---DQCFAQHKAGTDT--STIDQKLRLVISDFYQLILAFLQ 267
Query: 230 IYTKEIRPWTHMMEVPQLHGFGPAANRLLEAYKMLLKFLGNLQNLRDSHAALAFGSSETS 289
+Y E+R VP LH GP + + + L + + D+ A + +
Sbjct: 268 VYDDELRECCQR-PVPSLHPSGPIIQAVYQTLASCGQLLRAVMEIADTSAEAMKAARKQE 326
Query: 290 GGPS 293
G P+
Sbjct: 327 GEPN 330
>emb|CAG31581.1| hypothetical protein [Gallus gallus]
Length = 779
Score = 33.5 bits (75), Expect = 8.9
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 171 AELESKLTEQSKILLN--LQQKVDDLASKHA--YNPDEEYTEVESQLRAHLESFLETART 226
AE S+L+++ K + N LQ+K+++ H + DE++ +E++LR LE A
Sbjct: 95 AESSSQLSQEQKSVFNEDLQKKIEENERLHILYFEADEQHKRLEAELRTKLEVLESDAAQ 154
Query: 227 FNMIYTKEIRPWTHMME 243
+ R +T +E
Sbjct: 155 HQAVVDSLTRKYTDTIE 171
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.332 0.143 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,659,641
Number of Sequences: 2540612
Number of extensions: 17519633
Number of successful extensions: 53039
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 53003
Number of HSP's gapped (non-prelim): 35
length of query: 329
length of database: 863,360,394
effective HSP length: 128
effective length of query: 201
effective length of database: 538,162,058
effective search space: 108170573658
effective search space used: 108170573658
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 75 (33.5 bits)
Medicago: description of AC140721.10