BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140671.6 + phase: 0 /pseudo
(999 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 237 1e-60
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 226 3e-57
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 204 2e-50
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 195 7e-48
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 192 5e-47
gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (jap... 182 4e-44
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 181 1e-43
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 181 1e-43
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 181 1e-43
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 176 3e-42
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 174 2e-41
gb|AAX95232.1| retrotransposon protein, putative, unclassified [... 172 5e-41
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 171 9e-41
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 169 3e-40
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 169 3e-40
ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cu... 169 4e-40
emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|45393... 166 3e-39
gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam... 166 3e-39
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 166 5e-39
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 164 2e-38
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
Length = 929
Score = 237 bits (605), Expect = 1e-60
Identities = 124/323 (38%), Positives = 195/323 (59%), Gaps = 1/323 (0%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
LK+WN + FGNI RK ++++ L +Q+ ++ L E L ++ + L+QEE LW
Sbjct: 92 LKKWNKEVFGNIHVRKEKVVSDLKAVQDLLEVVQTDDLLMKEDTLLKEFDVLLHQEETLW 151
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
FQKSR K +A GDRNT ++H+ T+IRRR+N+I L D W+ + L+ L ++Y L
Sbjct: 152 FQKSREKLLALGDRNTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKL 211
Query: 121 FK-EDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
+ ED + +P + + N L +E A+ MG KA G DGY +F
Sbjct: 212 YSLEDVSVVRGTLPTEGFPRLTREEKNNLNRPFTRDEVVVAVRSMGRFKAPGPDGYQPVF 271
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+Q CW+ V +S+ FV + + + L N++L+V++ K+ KPE ++QFRP+SLCNV++K
Sbjct: 272 YQQCWETVGESVSKFVMEFFESGVLPKSTNDVLLVLLAKVAKPERITQFRPVSLCNVLFK 331
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFMSIKID 299
II+K++V R+K ++ ++I P Q+SFIPGR NI+V QE VH+M + KG+K +M +K+D
Sbjct: 332 IITKMMVIRLKNVISKLIGPAQASFIPGRLSFDNIVVVQEAVHSMRRKKGRKGWMLLKLD 391
Query: 300 L*KSL*SS*LEFCGEMLRGV*VS 322
L K+ +F E L +S
Sbjct: 392 LEKAYDRIRWDFLAETLEAAGLS 414
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 226 bits (576), Expect = 3e-57
Identities = 119/304 (39%), Positives = 187/304 (61%), Gaps = 1/304 (0%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L++WN + FG+I RK +L+A + +Q+ S+ L E+ L +++ + L QEE LW
Sbjct: 140 LRKWNREVFGDIHVRKEKLVADIKEVQDLLGVVLSDDLLAKEEVLLKEMDLVLEQEETLW 199
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
FQKSR K+I GDRNT ++H+ TIIRRR+N+I +L D W+ D L+ + +Y L
Sbjct: 200 FQKSREKYIELGDRNTTFFHTSTIIRRRRNRIESLKGDDDRWVTDKVELEAMALTYYKRL 259
Query: 121 FK-EDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
+ ED +++ + ++ L+ E A+ MG KA G DGY +F
Sbjct: 260 YSLEDVSEVRNMLPTGGFASISEAEKAALLQAFTKAEVVSAVKSMGRFKAPGPDGYQPVF 319
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+Q CW+ V S+ FV + + L + N+ L+V+I K+ KPE + QFRP+SLCNV++K
Sbjct: 320 YQQCWETVGPSVTRFVLEFFETGVLPASTNDALLVLIAKVAKPERIQQFRPVSLCNVLFK 379
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFMSIKID 299
II+K++V R+K ++ ++I P Q+SFIPGR NI++ QE VH+M + KG+K +M +K+D
Sbjct: 380 IITKMMVTRLKNVISKLIGPAQASFIPGRLSIDNIVLVQEAVHSMRRKKGRKGWMLLKLD 439
Query: 300 L*KS 303
L K+
Sbjct: 440 LEKA 443
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
gi|25407453|pir||H85088 hypothetical protein AT4g08830
[imported] - Arabidopsis thaliana
Length = 947
Score = 204 bits (518), Expect = 2e-50
Identities = 114/305 (37%), Positives = 177/305 (57%), Gaps = 23/305 (7%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
LK+WN FG++ ++K EL+ + +Q++ + S+ + E++L +
Sbjct: 46 LKKWNRDVFGDVKKKKEELMREIQVVQDALDVHQSDDMLRKEEDLIKA------------ 93
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
F KSR KWIA GDRNT Y+H+ TIIRRR+N++ L ++ WI D L+ L +Y L
Sbjct: 94 FDKSREKWIALGDRNTNYFHTTTIIRRRQNRVERLHNEEGTWIFDAKELEALAVQYYQRL 153
Query: 121 FKED------TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDG 174
+ D P + T V+ L + V++ A+ MG +KA G DG
Sbjct: 154 YSMDDVLQVVNPLPQDGLERLTREEVLSLNKPFLATEVEV-----AIRSMGKYKAPGPDG 208
Query: 175 YPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLC 234
Y IF+Q CW+ V +S+ F + + L N+ L+V+IPK+ KPE ++QFRPISLC
Sbjct: 209 YQPIFYQSCWEVVGNSVIRFALDFFSSGILPPQTNDALVVLIPKVPKPERMNQFRPISLC 268
Query: 235 NVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFM 294
N I+K+I+K++V R+K ++ ++I P QSSFIPGR NI+V QE VH++++ KG+K+ +
Sbjct: 269 NAIFKMITKMMVLRLKKVIGKLIGPSQSSFIPGRLSLDNIVVVQEAVHSLNRKKGRKERL 328
Query: 295 SIKID 299
ID
Sbjct: 329 CHMID 333
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 195 bits (495), Expect = 7e-48
Identities = 112/306 (36%), Positives = 177/306 (57%), Gaps = 9/306 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
LK+W+ +FG++ R+ ++ +L ++ S ++ + EK + +QL +EE +
Sbjct: 296 LKDWSKASFGSVRRKILKMERKLKSLRQSP---VNDVVIQEEKLIEQQLCELFEKEEIMA 352
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLC-DDSSDWIDDPNILKNLVRNFYTD 119
Q+SR W+ +GDRNT ++H++ RRR N+I L DD S I I K + FY +
Sbjct: 353 RQRSRVDWLREGDRNTAFFHARASARRRTNRIKELVRDDGSRCISQEGI-KRMAEVFYEN 411
Query: 120 LFK-EDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNE-CKRALFDMGPHKASGEDGYPA 177
LF E S + ++ PN VG + N + NE K ALF MG KA G DG+PA
Sbjct: 412 LFSSEPCDSMEEVLD--AIPNKVGDFINGELGKQYTNEEIKTALFQMGSTKAPGPDGFPA 469
Query: 178 IFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVI 237
+F+Q W + + + N V+ + + + + ++V+IPK+ +S+FRPISLCNV+
Sbjct: 470 LFYQTHWGILEEHICNAVRGFLLGEEIPEGLCDSVVVLIPKVNNASHLSKFRPISLCNVL 529
Query: 238 YKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKDFMSIK 297
YKI SKV+ NR+KP L I+S +QS+F+PGR I + +VA E +H + K K F ++K
Sbjct: 530 YKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITDSALVAYECLHTIRKQHNKNPFFALK 589
Query: 298 IDL*KS 303
ID+ K+
Sbjct: 590 IDMMKA 595
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 192 bits (488), Expect = 5e-47
Identities = 103/303 (33%), Positives = 171/303 (55%), Gaps = 7/303 (2%)
Query: 2 KEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLWF 61
+ W+ K + NI R + +L+ + + + ++ + + LY+EE LW
Sbjct: 672 QSWSKKKYKNIGRELEKTRKKLSNLLEAGTD------KAAIRQTSDYMNELLYREEMLWL 725
Query: 62 QKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDLF 121
Q+SR W+ +GDRNTK++H++ R +KNKI L D + + +++ + ++ D+F
Sbjct: 726 QRSRVNWLKEGDRNTKFFHNRVAWRAKKNKITKLRDAAGTFHRSKMVMEQMATQYFKDMF 785
Query: 122 KEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFFQ 181
D S V+ P V + +N+L S +E ALF +GP KA G DG+ A F+Q
Sbjct: 786 TADPNLDHSPVTRLIQPKVTEEMNNRLCSEFSEDEIANALFQIGPLKAPGTDGFLARFYQ 845
Query: 182 HCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKII 241
W + + + VK+ + + ++ +N+ IV+IPKIE+P + FRPISLCNVIYK++
Sbjct: 846 RNWGCIKNDIVRAVKEFFHSGIMLEGVNDTAIVLIPKIEQPRDLRDFRPISLCNVIYKVL 905
Query: 242 SKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGKKD-FMSIKIDL 300
SK +VNR++P LD +IS QS+F+P R I N ++A E H + + K + + K+DL
Sbjct: 906 SKCLVNRLRPFLDELISKNQSAFVPRRMITDNALLAFECFHFIQRNKNPRSAACAYKLDL 965
Query: 301 *KS 303
K+
Sbjct: 966 SKA 968
>gb|AAK71569.2| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|50918647|ref|XP_469720.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1833
Score = 182 bits (463), Expect = 4e-44
Identities = 103/304 (33%), Positives = 168/304 (54%), Gaps = 5/304 (1%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L W+ GN+ ++ +L +L ++N N + +++KEL E L ++EE W
Sbjct: 266 LVSWSKDKIGNVRKKIKDLREKLGELRNIGLLDTDNEVHSVKKELEEML----HREEIWW 321
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
Q+SR W+ +GD NT+Y+H K R +KNKI L + + +K + R+F+ L
Sbjct: 322 KQRSRITWLKEGDLNTRYFHLKASWRAKKNKIKKLKKNDGSTTMNKKEMKEINRSFFQQL 381
Query: 121 FKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFF 180
+ +D + + + + + LI E ALF +GP KA G DG+PA F
Sbjct: 382 YTKDDNLNPVNLLNMFHEKISEQMNADLIKPFTNEEISDALFQIGPLKAPGPDGFPARFL 441
Query: 181 QHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKI 240
Q W + + V+ + + + +N+ +IVMIPK E + FRPISLCNV+YK+
Sbjct: 442 QRNWGLLKGEVIAAVRNFFEDEVMQEGVNDTVIVMIPKKNLAEDMKDFRPISLCNVVYKV 501
Query: 241 ISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSKMKGK-KDFMSIKID 299
++K +VNR++P+L IIS QS+FIPGR I N ++A E H++ K + ++F ++K+D
Sbjct: 502 VAKCLVNRMRPMLQEIISEAQSAFIPGRLITDNALIAFECFHSIKNCKRENQNFCALKLD 561
Query: 300 L*KS 303
L K+
Sbjct: 562 LSKA 565
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 181 bits (459), Expect = 1e-43
Identities = 101/304 (33%), Positives = 164/304 (53%), Gaps = 7/304 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L+ W+ N+ R + +L + S+ + N ++E LY+EE LW
Sbjct: 1017 LRSWSRAKVKNVGRELEKARKKLAELIESN--ADRTVIRNATDHMNE----LLYREEMLW 1070
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
Q+SR W+ D DRNTK++HS+ + R +KNKI L D + L+++ ++ D+
Sbjct: 1071 LQRSRVNWLKDEDRNTKFFHSRAVWRAKKNKISKLRDANETVHSSTMKLESMATEYFQDV 1130
Query: 121 FKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFF 180
+ D V+ V + KL + +E +A+F +GP K+ G DG+PA F+
Sbjct: 1131 YTADPNLNPETVTRLIQEKVTDIMNEKLCEDFTEDEISQAIFQIGPLKSPGPDGFPARFY 1190
Query: 181 QHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKI 240
Q W + + V++ + + +N+ IV+IPK E+P + FRPISLCNV+YK+
Sbjct: 1191 QRNWGTIKADIIGAVRRFFQTGLMPEGVNDTAIVLIPKKEQPVDLRDFRPISLCNVVYKV 1250
Query: 241 ISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSK-MKGKKDFMSIKID 299
+SK +VNR++P+LD ++S QS+F+ GR I N ++A E HAM K K + K+D
Sbjct: 1251 VSKCLVNRLRPILDDLVSVEQSAFVQGRMITDNALLAFECFHAMQKNKKANHAACAYKLD 1310
Query: 300 L*KS 303
L K+
Sbjct: 1311 LSKA 1314
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 181 bits (458), Expect = 1e-43
Identities = 96/304 (31%), Positives = 166/304 (54%), Gaps = 7/304 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L+ W N+ R + +L + S N + ++ + + LY+EE LW
Sbjct: 835 LRSWGKTKVKNVGRELEKARKKLEDLIAS------NAARSSIRQATDHMNEMLYREEMLW 888
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
Q+SR W+ +GDRNT+++HS+ + R +KNKI L D++ ++L+ + ++ ++
Sbjct: 889 LQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEV 948
Query: 121 FKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFF 180
+K D V+ V + KL + E +A+F +GP K+ G DG+PA F+
Sbjct: 949 YKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFY 1008
Query: 181 QHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKI 240
Q W + + V+ + + + +N+ IV+IPK ++P + +RPISLCNV+YK+
Sbjct: 1009 QRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKV 1068
Query: 241 ISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSK-MKGKKDFMSIKID 299
+SK +VNR++P+LD ++S QS+FI GR I N ++A E H++ K K + K+D
Sbjct: 1069 VSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLD 1128
Query: 300 L*KS 303
L K+
Sbjct: 1129 LSKA 1132
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 181 bits (458), Expect = 1e-43
Identities = 96/304 (31%), Positives = 166/304 (54%), Gaps = 7/304 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L+ W N+ R + +L + S N + ++ + + LY+EE LW
Sbjct: 835 LRSWGKTKVKNVGRELEKARKKLEDLIAS------NAARSSIRQATDHMNEMLYREEMLW 888
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
Q+SR W+ +GDRNT+++HS+ + R +KNKI L D++ ++L+ + ++ ++
Sbjct: 889 LQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISKLRDENGAIHSMTSVLETMATEYFQEV 948
Query: 121 FKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFF 180
+K D V+ V + KL + E +A+F +GP K+ G DG+PA F+
Sbjct: 949 YKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKEEEIAQAIFQIGPLKSPGPDGFPARFY 1008
Query: 181 QHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKI 240
Q W + + V+ + + + +N+ IV+IPK ++P + +RPISLCNV+YK+
Sbjct: 1009 QRNWGTLKSDIILAVRNFFQSGLMPEGVNDTAIVLIPKKDQPIDLKDYRPISLCNVVYKV 1068
Query: 241 ISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMSK-MKGKKDFMSIKID 299
+SK +VNR++P+LD ++S QS+FI GR I N ++A E H++ K K + K+D
Sbjct: 1069 VSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNALLAFECFHSIQKNKKANSAACAYKLD 1128
Query: 300 L*KS 303
L K+
Sbjct: 1129 LSKA 1132
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 176 bits (447), Expect = 3e-42
Identities = 90/270 (33%), Positives = 154/270 (56%), Gaps = 1/270 (0%)
Query: 35 SNFLENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILT 94
SN + ++ + + LY+EE LW Q+SR W+ +GDRNT+++HS+ + R +KNKI
Sbjct: 951 SNAARSSIRQATDHMNEMLYREEMLWLQRSRVNWLKEGDRNTRFFHSRAVWRAKKNKISK 1010
Query: 95 LCDDSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQL 154
L D++ ++L+ + ++ ++K D V+ V + KL +
Sbjct: 1011 LRDENGAIHSTTSVLETMATEYFQGVYKADPSLNPESVTRLFQEKVTDAMNEKLCQEFKE 1070
Query: 155 NECKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIV 214
E +A+F +GP K+ DG+PA F+Q W + + V+ + + + +N+ IV
Sbjct: 1071 EEIAQAIFQIGPLKSPRPDGFPARFYQRNWGTLKSDIILAVRNFFQSGLMPKGVNDTAIV 1130
Query: 215 MIPKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNI 274
+IPK ++P + +RPISLCNV+YK++SK +VNR++P+LD ++S QS+FI GR I N
Sbjct: 1131 LIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMITDNA 1190
Query: 275 IVAQEMVHAMSK-MKGKKDFMSIKIDL*KS 303
++A E H++ K K + K+DL K+
Sbjct: 1191 LLAFECFHSIQKNKKANSAACAYKLDLSKA 1220
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 174 bits (440), Expect = 2e-41
Identities = 100/284 (35%), Positives = 159/284 (55%), Gaps = 7/284 (2%)
Query: 38 LENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCD 97
L L+KEL ++ EE W +KSR W+ +GDRNTKY+H+ T RR +N+I L D
Sbjct: 318 LARLKKELSQEYN----NEEQFWQEKSRIMWMRNGDRNTKYFHAATKNRRAQNRIQKLID 373
Query: 98 DSS-DWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNE 156
+ +W D + L + ++ LF + P V + +N L++ + E
Sbjct: 374 EEGREWTSDED-LGRVAEAYFKKLFASEDVGYTVEELENLTPLVSDQMNNNLLAPITKEE 432
Query: 157 CKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMI 216
+RA F + PHK G DG +Q W+ + D + V+ + + S+ +N I +I
Sbjct: 433 VQRATFSINPHKCPGPDGMNGFLYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLI 492
Query: 217 PKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIV 276
PKI K E ++ FRPISLCNVIYK+I K++ NR+K +L +IS Q++F+ GR I NI++
Sbjct: 493 PKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILI 552
Query: 277 AQEMVHAM-SKMKGKKDFMSIKIDL*KSL*SS*LEFCGEMLRGV 319
A E++HA+ S K ++F++IK D+ K+ F + +RG+
Sbjct: 553 AHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGL 596
>gb|AAX95232.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)] gi|62733010|gb|AAX95129.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1324
Score = 172 bits (436), Expect = 5e-41
Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 5/299 (1%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L +W+ G++ +R + L + S S+ + E L +L Q E W
Sbjct: 736 LWDWSKNFLGDLEKRIKKAKQALEAHRRSP---ISSSTASREAVLKYRLDKLEEQRELYW 792
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
Q++ W+ GDRNTK++H R+++NKI L D + I D +L+ FY L
Sbjct: 793 RQRANQHWLEKGDRNTKFFHECASERKKRNKIKKLRRDDGEVITDEAGSLSLISEFYKQL 852
Query: 121 FKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKAS-GEDGYPAIF 179
F P + V +++L+ V E K+AL +G KA G DG PA+F
Sbjct: 853 FTAGVPLNLDELLQNVPKRVTSTMNDELMKGVTTEEIKKALDSIGDLKAPPGSDGMPALF 912
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
++ W+ V D + + VK + N+ ++V+IPK+ PE + RPISLCNV+YK
Sbjct: 913 YKQFWECVGDDIVHEVKDFLGGGEMPDSWNDTVVVLIPKVPNPERIKDLRPISLCNVVYK 972
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIK 297
I SKV+ NR+KPLL IISP Q +F+P R I NI++A E+ H + +K +G F ++K
Sbjct: 973 IASKVLANRLKPLLSEIISPIQIAFVPQRMITDNILLAYELTHFLKTKRRGSVGFAAVK 1031
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 171 bits (434), Expect = 9e-41
Identities = 93/305 (30%), Positives = 168/305 (54%), Gaps = 8/305 (2%)
Query: 1 LKEWNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLW 60
L +W +T N + L R++ + H + L L + L EE W
Sbjct: 644 LAKWKRRTKTNTAEKIETLKYRVDAAERDHTLPHQTILR-----LRQDLNQAYRDEELYW 698
Query: 61 FQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDL 120
KSR++W+ GDRNT ++++ T +R+ +N+I + D + + + N++ DL
Sbjct: 699 HLKSRNRWMLLGDRNTMFFYASTKLRKSRNRIKAITDAQGIENFRDDTIGKVAENYFADL 758
Query: 121 FKE-DTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIF 179
F T + I+S P V + +++L+ +V E + A+F +G +A G DG+ A F
Sbjct: 759 FTTTQTSDWEEIISGIA-PKVTEQMNHELLQSVTDQEVRDAVFAIGADRAPGFDGFTAAF 817
Query: 180 FQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYK 239
+ H WD + + + V+ + + + + IN I +IPKI P+ +S +RPISLC YK
Sbjct: 818 YHHLWDLIGNDVCLMVRHFFESDVMDNQINQTQICLIPKIIDPKHMSDYRPISLCTASYK 877
Query: 240 IISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIKI 298
IISK+++ R+K L +IS Q++F+PG+NI N++VA E++H++ S+ + + ++++K
Sbjct: 878 IISKILIKRLKQCLGDVISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKT 937
Query: 299 DL*KS 303
D+ K+
Sbjct: 938 DISKA 942
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 169 bits (429), Expect = 3e-40
Identities = 94/264 (35%), Positives = 154/264 (57%), Gaps = 7/264 (2%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
+L E LA EE W QKSR++W+ +GD+NT Y+H+ T R +N++ T+ DD
Sbjct: 702 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 761
Query: 104 DDPNILKNLVRNFYTDLFKED---TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRA 160
+ N ++F+T++F + D +T N V K S+ ++ + A
Sbjct: 762 TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD---A 818
Query: 161 LFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIE 220
+ +G KA G DG A F+++CWD V + VK+ + + IN+ I MIPKI
Sbjct: 819 ICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKIT 878
Query: 221 KPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEM 280
P +S +RPI+LCNV+YK+ISK +VNR+K L+ I+S Q++FIPGR I+ N+++A E+
Sbjct: 879 NPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEV 938
Query: 281 VHAMS-KMKGKKDFMSIKIDL*KS 303
+H++ + + K +M++K D+ K+
Sbjct: 939 MHSLKVRKRVSKTYMAVKTDVSKA 962
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 169 bits (429), Expect = 3e-40
Identities = 94/264 (35%), Positives = 154/264 (57%), Gaps = 7/264 (2%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
+L E LA EE W QKSR++W+ +GD+NT Y+H+ T R +N++ T+ DD
Sbjct: 476 QLQESLAKAFSDEEIYWKQKSRNQWMKEGDQNTGYFHACTKTRYSQNRVNTIMDDQGRMF 535
Query: 104 DDPNILKNLVRNFYTDLFKED---TPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRA 160
+ N ++F+T++F + D +T N V K S+ ++ + A
Sbjct: 536 TGDKEIGNHAQDFFTNIFSTNGIKVSPIDFADFKSTVTNTVNLDLTKEFSDTEIYD---A 592
Query: 161 LFDMGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIE 220
+ +G KA G DG A F+++CWD V + VK+ + + IN+ I MIPKI
Sbjct: 593 ICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFFETSFMKPSINHTNICMIPKIT 652
Query: 221 KPEFVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEM 280
P +S +RPI+LCNV+YK+ISK +VNR+K L+ I+S Q++FIPGR I+ N+++A E+
Sbjct: 653 NPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRIINDNVMIAHEV 712
Query: 281 VHAMS-KMKGKKDFMSIKIDL*KS 303
+H++ + + K +M++K D+ K+
Sbjct: 713 MHSLKVRKRVSKTYMAVKTDVSKA 736
>ref|XP_475290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|49328177|gb|AAT58873.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1264
Score = 169 bits (428), Expect = 4e-40
Identities = 105/301 (34%), Positives = 160/301 (52%), Gaps = 5/301 (1%)
Query: 4 WNTKTFGNIFRRKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLWFQK 63
W+ G + +R L L + SN N E L +L L Q+ W Q+
Sbjct: 632 WDRTVLGELKKRVKNLRKEL---EKCRREPISNRQVNREHLLRYKLERLLDQQHIYWKQR 688
Query: 64 SRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDLFKE 123
+ S W+ GDRNTK++H++ ++++N I L D + N LK+ + N Y LF+
Sbjct: 689 AHSTWLTKGDRNTKFFHAQASEKKKRNTIQKLQDGHGGLVAG-NQLKSFISNQYQQLFRS 747
Query: 124 DTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFFQHC 183
+ S+ V V + L + Q E AL DMG KA G DG PAIF++
Sbjct: 748 NGCSQMDAVLQCVQARVTPEMREGLAAPYQREEVWVALKDMGDLKAPGADGIPAIFYKKF 807
Query: 184 WDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKIISK 243
D + + V V + N+ ++V+IPK ++P+ + RPISLCNV YK+ISK
Sbjct: 808 LSLAGDKVKDEVLAVLNGGDMPQGWNDTVVVLIPKTKQPDTLKDLRPISLCNVAYKLISK 867
Query: 244 VIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAMS-KMKGKKDFMSIKIDL*K 302
VIVNR+K +L IISP QS+F+P R I +N+++A E+ H ++ + KGK +IK+D+ K
Sbjct: 868 VIVNRLKVVLLEIISPSQSAFVPRRLITYNVLLAYELTHYLNQRKKGKNGVAAIKLDMSK 927
Query: 303 S 303
+
Sbjct: 928 A 928
>emb|CAB81184.1| putative protein [Arabidopsis thaliana] gi|4539357|emb|CAB40051.1|
putative protein [Arabidopsis thaliana]
gi|7486147|pir||T04278 hypothetical protein F25I24.40 -
Arabidopsis thaliana
Length = 1294
Score = 166 bits (421), Expect = 3e-39
Identities = 97/291 (33%), Positives = 167/291 (57%), Gaps = 7/291 (2%)
Query: 15 RKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDR 74
R N+L A L+ +S N + ++++EL + EE W QKSR++W+ +GDR
Sbjct: 657 RINQLQAALDKAMSSVNRTERRTISHIQREL----TVAYRDEERYWQQKSRNQWMKEGDR 712
Query: 75 NTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSW 134
NT+++H+ T R N+++T+ D+ + + F+T ++ E SI+ +
Sbjct: 713 NTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY-ESNGRPVSIIDF 771
Query: 135 TTY-PNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFN 193
+ P V + ++ L ++ E A+ +G KA G DG A F++ CW+ V +
Sbjct: 772 AGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIK 831
Query: 194 FVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLL 253
VK + + IN+ I MIPKI PE +S +RPI+LCNV+YKIISK +V R+K L
Sbjct: 832 EVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHL 891
Query: 254 DRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIKIDL*KS 303
D I+S Q++FIPGR ++ N+++A EM+H++ ++ + + +M++K D+ K+
Sbjct: 892 DAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 942
>gb|AAC33961.1| contains similarity to reverse trancriptase (Pfam: rvt.hmm, score:
42.57) [Arabidopsis thaliana] gi|7486711|pir||T01893
hypothetical protein F8M12.22 - Arabidopsis thaliana
Length = 1662
Score = 166 bits (421), Expect = 3e-39
Identities = 97/291 (33%), Positives = 167/291 (57%), Gaps = 7/291 (2%)
Query: 15 RKNELLARLNGIQNSHNYGYSNFLENLEKELHEQLAITLYQEECLWFQKSRSKWIADGDR 74
R N+L A L+ +S N + ++++EL + EE W QKSR++W+ +GDR
Sbjct: 677 RINQLQAALDKAMSSVNRTERRTISHIQREL----TVAYRDEERYWQQKSRNQWMKEGDR 732
Query: 75 NTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRNFYTDLFKEDTPSRDSIVSW 134
NT+++H+ T R N+++T+ D+ + + F+T ++ E SI+ +
Sbjct: 733 NTEFFHACTKTRFSVNRLVTIKDEEGMIYRGDKEIGVHAQEFFTKVY-ESNGRPVSIIDF 791
Query: 135 TTY-PNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGYPAIFFQHCWDKVADSLFN 193
+ P V + ++ L ++ E A+ +G KA G DG A F++ CW+ V +
Sbjct: 792 AGFKPIVTEQINDDLTKDLSDLEIYNAICHIGDDKAPGPDGLTARFYKSCWEIVGPDVIK 851
Query: 194 FVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCNVIYKIISKVIVNRIKPLL 253
VK + + IN+ I MIPKI PE +S +RPI+LCNV+YKIISK +V R+K L
Sbjct: 852 EVKIFFRTSYMKQSINHTNICMIPKITNPETLSDYRPIALCNVLYKIISKCLVERLKGHL 911
Query: 254 DRIISPYQSSFIPGRNIHHNIIVAQEMVHAM-SKMKGKKDFMSIKIDL*KS 303
D I+S Q++FIPGR ++ N+++A EM+H++ ++ + + +M++K D+ K+
Sbjct: 912 DAIVSDSQAAFIPGRLVNDNVMIAHEMMHSLKTRKRVSQSYMAVKTDVSKA 962
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 166 bits (419), Expect = 5e-39
Identities = 93/261 (35%), Positives = 144/261 (54%), Gaps = 1/261 (0%)
Query: 44 ELHEQLAITLYQEECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWI 103
EL +L EE W+QKSRS W+ GD N+K++H+ T RR +N+I L D++ W
Sbjct: 104 ELTLRLKEAYRDEEQYWYQKSRSLWMKLGDNNSKFFHALTKQRRARNRITGLHDENGIWS 163
Query: 104 DDPNILKNLVRNFYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFD 163
+ + ++N+ +++ +LF P + + ++ L ++ E + ALF
Sbjct: 164 IEDDDIQNIAVSYFQNLFTTANPQVFDEALGEVQVLITDRINDLLTADATECEVRAALFM 223
Query: 164 MGPHKASGEDGYPAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPE 223
+ P KA G DG A+FFQ W + L + V +N I +IPK E+P
Sbjct: 224 IHPEKAPGPDGMTALFFQKSWAIIKSDLLSLVNSFLQEGVFDKRLNTTNICLIPKTERPT 283
Query: 224 FVSQFRPISLCNVIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHA 283
+++ RPISLCNV YK+ISK++ R+K +L +IS QS+F+ GR I NI++AQEM H
Sbjct: 284 RMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLISDNILIAQEMFHG 343
Query: 284 MSKMKGKKD-FMSIKIDL*KS 303
+ KD FM+IK D+ K+
Sbjct: 344 LRTNSSCKDKFMAIKTDMSKA 364
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 164 bits (414), Expect = 2e-38
Identities = 94/265 (35%), Positives = 146/265 (54%), Gaps = 5/265 (1%)
Query: 56 EECLWFQKSRSKWIADGDRNTKYYHSKTIIRRRKNKILTLCDDSSDWIDDPNILKNLVRN 115
EE W+QKSRS W+ GD N+KY+H+ T RR +N+I+ L D++ W + ++++ +
Sbjct: 182 EEQYWYQKSRSLWMKVGDNNSKYFHALTKQRRARNRIIGLHDENGKWFAEDKDVQHIAVS 241
Query: 116 FYTDLFKEDTPSRDSIVSWTTYPNVVGKYHNKLISNVQLNECKRALFDMGPHKASGEDGY 175
++ LF + P + + + ++ L + +E + ALF M P KA G DG
Sbjct: 242 YFETLFNKSNPQNIAESLSEVKTLITDQINDFLTTPATEDEVRAALFLMHPEKAPGPDGM 301
Query: 176 PAIFFQHCWDKVADSLFNFVKQVWVNHSLISFINNILIVMIPKIEKPEFVSQFRPISLCN 235
A+FFQ W + + V + +N I +IPK E+P +++ RPISLCN
Sbjct: 302 TALFFQKPWATIKMDMLFLVNSFLQDGVFDKQLNTTNICLIPKTERPTRMTELRPISLCN 361
Query: 236 VIYKIISKVIVNRIKPLLDRIISPYQSSFIPGRNIHHNIIVAQEMVHAM---SKMKGKKD 292
V YKIISK++ R+K +L +IS S+F+ GR I NI++AQEM H + KGK
Sbjct: 362 VGYKIISKILCQRLKKILPSLISETHSAFVEGRLISDNILIAQEMFHGLRTNPSCKGK-- 419
Query: 293 FMSIKIDL*KSL*SS*LEFCGEMLR 317
FM+IK D+ K+ F E+L+
Sbjct: 420 FMAIKTDMSKAYDRVEWNFIEELLK 444
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.360 0.161 0.604
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,432,865,680
Number of Sequences: 2540612
Number of extensions: 52020254
Number of successful extensions: 243311
Number of sequences better than 10.0: 645
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 131
Number of HSP's that attempted gapping in prelim test: 241945
Number of HSP's gapped (non-prelim): 887
length of query: 999
length of database: 863,360,394
effective HSP length: 138
effective length of query: 861
effective length of database: 512,755,938
effective search space: 441482862618
effective search space used: 441482862618
T: 11
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC140671.6