BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140670.5 + phase: 0 /pseudo/partial
(181 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ22661.1| At1g01640 [Arabidopsis thaliana] gi|30678423|ref|... 217 1e-55
ref|XP_480211.1| putative ribosomal protein I [Oryza sativa (jap... 207 8e-53
gb|AAV24821.1| putative ribosomal protein I [Oryza sativa (japon... 207 1e-52
gb|AAF03434.1| putative ribosomal protein L13 [Arabidopsis thali... 139 3e-32
gb|AAF21997.1| ribosomal protein I [Ceratopteris richardii] 124 1e-27
dbj|BAD82182.1| ribosomal protein-like [Oryza sativa (japonica c... 94 2e-18
ref|YP_076868.1| 50S ribosomal protein L13 [Symbiobacterium ther... 93 4e-18
ref|ZP_00187868.2| COG0102: Ribosomal protein L13 [Rubrobacter x... 91 1e-17
ref|NP_229253.1| ribosomal protein L13 [Thermotoga maritima MSB8... 91 2e-17
ref|ZP_00327165.1| COG0102: Ribosomal protein L13 [Trichodesmium... 89 4e-17
gb|AAV24819.1| unknown protein [Oryza sativa (japonica cultivar-... 89 4e-17
gb|AAP07244.1| LSU ribosomal protein L13P [Bacillus cereus ATCC ... 88 1e-16
ref|NP_108552.1| ribosomal protein L13 [Mesorhizobium loti MAFF3... 88 1e-16
ref|NP_623797.1| Ribosomal protein L13 [Thermoanaerobacter tengc... 88 1e-16
ref|YP_077434.1| ribosomal protein L13 [Bacillus licheniformis A... 88 1e-16
ref|ZP_00390547.1| COG0102: Ribosomal protein L13 [Bacillus anth... 88 1e-16
ref|YP_081753.1| ribosomal protein L13 (50S ribosomal protein L1... 88 1e-16
gb|AAU37890.1| RplM protein [Mannheimia succiniciproducens MBEL5... 87 2e-16
gb|AAL94533.1| LSU ribosomal protein L13P [Fusobacterium nucleat... 87 2e-16
dbj|BAB03887.1| 50S ribosomal protein L13 [Bacillus halodurans C... 87 2e-16
>gb|AAQ22661.1| At1g01640 [Arabidopsis thaliana] gi|30678423|ref|NP_186828.2|
ribosomal protein L13 family protein [Arabidopsis
thaliana] gi|30678425|ref|NP_850494.1| ribosomal protein
L13 family protein [Arabidopsis thaliana]
Length = 205
Score = 217 bits (552), Expect = 1e-55
Identities = 119/194 (61%), Positives = 135/194 (69%), Gaps = 28/194 (14%)
Query: 1 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
+A AGIKRI LDGLRWRVFDA+GQ+LGRLASQI+TV+ KDKPTY PNRDDGD+CIVLNA
Sbjct: 17 KAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNA 76
Query: 61 KDIAVTGRKLTDKVYYWHTG-----KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVM---- 111
K+I TGRKLTDK Y WHTG KE ++L+ AK +K + M
Sbjct: 77 KEIGFTGRKLTDKFYRWHTGYIGHLKE-------RSLKDQMAKDPTEVIRKAVWRMLPSN 129
Query: 112 ------DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENA 165
DRKLRIF G EHPFGD+PLEP+VMPPR VREMRPRARRAMIRAQKKAEQ +
Sbjct: 130 NLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQKKAEQAE--- 186
Query: 166 EQRQNAEEMKNSKK 179
E+K KK
Sbjct: 187 ---NEGTEVKKGKK 197
>ref|XP_480211.1| putative ribosomal protein I [Oryza sativa (japonica
cultivar-group)] gi|37806271|dbj|BAC99787.1| putative
ribosomal protein I [Oryza sativa (japonica
cultivar-group)]
Length = 229
Score = 207 bits (528), Expect = 8e-53
Identities = 107/187 (57%), Positives = 131/187 (69%), Gaps = 8/187 (4%)
Query: 1 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
+A AG++RI LDGLRWRVFDAKGQ+LGRLASQIA V+ GKDKPTY P+ ++GDMC+VLNA
Sbjct: 14 KALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNA 73
Query: 61 KDIAVTGRKLTDKVYYWHTG------KEL*RIRWPKTLQMLFAKLFCA*FQKTTY--VMD 112
KDI+VTGRK+TDK+YYWHTG + + + K + K + D
Sbjct: 74 KDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEVIRKAVMRMLPRNRLRDDRD 133
Query: 113 RKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAE 172
RKLRIF GSEHPF DRPLEP+ MPPR VREMRP+ARRA+IRAQKK + + + + E
Sbjct: 134 RKLRIFSGSEHPFHDRPLEPFAMPPRQVREMRPQARRALIRAQKKEQDRAAASTKDDKDE 193
Query: 173 EMKNSKK 179
E KK
Sbjct: 194 EEDKGKK 200
>gb|AAV24821.1| putative ribosomal protein I [Oryza sativa (japonica
cultivar-group)]
Length = 191
Score = 207 bits (527), Expect = 1e-52
Identities = 108/186 (58%), Positives = 135/186 (72%), Gaps = 9/186 (4%)
Query: 1 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
+A AG++RI LDGLRWRVFDAKGQ+LGRLASQIA V+ GKDKPTY P+ ++GDMC+VLNA
Sbjct: 2 KALAGLRRINLDGLRWRVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENGDMCVVLNA 61
Query: 61 KDIAVTGRKLTDKVYYWHTG--------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMD 112
KDI+VTGRK+TDK+YYWHTG + ++ T + A + + D
Sbjct: 62 KDISVTGRKMTDKIYYWHTGYIGHLKERRLKDQMEKDPTEAIRKAVMRMLPRNRLRDDRD 121
Query: 113 RKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNAE 172
RKLRIF G+EHPF DRPLEP++MP R VREMRPRARRA++RAQKK EQ + A ++ E
Sbjct: 122 RKLRIFSGNEHPFHDRPLEPFMMPRRQVREMRPRARRALLRAQKK-EQDRAAAASTKDEE 180
Query: 173 EMKNSK 178
KN+K
Sbjct: 181 NAKNAK 186
>gb|AAF03434.1| putative ribosomal protein L13 [Arabidopsis thaliana]
Length = 137
Score = 139 bits (351), Expect = 3e-32
Identities = 64/80 (80%), Positives = 71/80 (88%)
Query: 1 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
+A AGIKRI LDGLRWRVFDA+GQ+LGRLASQI+TV+ KDKPTY PNRDDGD+CIVLNA
Sbjct: 17 KAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPTYCPNRDDGDICIVLNA 76
Query: 61 KDIAVTGRKLTDKVYYWHTG 80
K+I TGRKLTDK Y WHTG
Sbjct: 77 KEIGFTGRKLTDKFYRWHTG 96
>gb|AAF21997.1| ribosomal protein I [Ceratopteris richardii]
Length = 141
Score = 124 bits (311), Expect = 1e-27
Identities = 67/133 (50%), Positives = 84/133 (62%), Gaps = 8/133 (6%)
Query: 1 RAAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNA 60
RA AG+ +++GLRWRVFDAKGQILGRLASQI+ V+ GKDKPTY P+ + GD+C+V+NA
Sbjct: 7 RAMAGLTPERIEGLRWRVFDAKGQILGRLASQISVVLQGKDKPTYAPHLEKGDICVVINA 66
Query: 61 KDIAVTGRKLTDKVYYWHTG------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMD-- 112
K + TGRKLTDK Y WHTG + + + K + K K D
Sbjct: 67 KHVCFTGRKLTDKFYRWHTGYIGHLKERSLKEQMXKDPTEVIRKAVVRMLPKNRLRDDRA 126
Query: 113 RKLRIFPGSEHPF 125
RKLRIF +HPF
Sbjct: 127 RKLRIFVXDQHPF 139
>dbj|BAD82182.1| ribosomal protein-like [Oryza sativa (japonica cultivar-group)]
gi|56784324|dbj|BAD82345.1| ribosomal protein-like
[Oryza sativa (japonica cultivar-group)]
Length = 86
Score = 93.6 bits (231), Expect = 2e-18
Identities = 46/67 (68%), Positives = 54/67 (79%), Gaps = 1/67 (1%)
Query: 112 DRKLRIFPGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMIRAQKKAEQQQENAEQRQNA 171
DRKLRIF G+EHPF DRPLEP+VMPPR VREMRPRARR +IRAQKK EQ + A ++
Sbjct: 16 DRKLRIFSGNEHPFHDRPLEPFVMPPRQVREMRPRARRVLIRAQKK-EQDRAAAASTKDE 74
Query: 172 EEMKNSK 178
E +KN+K
Sbjct: 75 ENVKNAK 81
>ref|YP_076868.1| 50S ribosomal protein L13 [Symbiobacterium thermophilum IAM 14863]
gi|51857866|dbj|BAD42024.1| 50S ribosomal protein L13
[Symbiobacterium thermophilum IAM 14863]
Length = 143
Score = 92.8 bits (229), Expect = 4e-18
Identities = 50/128 (39%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+G+ LGRLAS++A ++ GK KPT+TP+ D GD I++NA+ I VTG+K+TDKV
Sbjct: 15 KWYVVDAEGKTLGRLASKVAAILRGKHKPTFTPHVDCGDFVIIVNAEKIQVTGKKVTDKV 74
Query: 75 YYWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YY H+G +++ R + L++ + + M RKL+++ G EHP
Sbjct: 75 YYRHSGYPGGQKATTFEQMIARRPERVLELAIKGMLP--HNRLGRQMYRKLKVYAGPEHP 132
Query: 125 FGDRPLEP 132
+ EP
Sbjct: 133 HAAQKPEP 140
>ref|ZP_00187868.2| COG0102: Ribosomal protein L13 [Rubrobacter xylanophilus DSM 9941]
Length = 143
Score = 90.9 bits (224), Expect = 1e-17
Identities = 52/131 (39%), Positives = 74/131 (55%), Gaps = 16/131 (12%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+G+ LGRLA++I+ ++ GK+KP YTP+ D GD +V+NA + VTGRK KV
Sbjct: 14 KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73
Query: 75 YYWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMD--RKLRIFPGSE 122
Y WHTG +++ R R + L+ + KT +KLRI+ G E
Sbjct: 74 YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGM----MPKTRLARRQLKKLRIYAGPE 129
Query: 123 HPFGDRPLEPY 133
HP + EPY
Sbjct: 130 HPHAGQTPEPY 140
>ref|NP_229253.1| ribosomal protein L13 [Thermotoga maritima MSB8]
gi|4982019|gb|AAD36522.1| ribosomal protein L13
[Thermotoga maritima MSB8] gi|7440827|pir||G72250
ribosomal protein L13 - Thermotoga maritima (strain
MSB8) gi|7674184|sp|Q9X1G5|RL13_THEMA 50S ribosomal
protein L13
Length = 149
Score = 90.5 bits (223), Expect = 2e-17
Identities = 51/127 (40%), Positives = 75/127 (58%), Gaps = 10/127 (7%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA G++LGRLA++IA ++MGK KP YTP+ D GD IV+NA + +TG+KL KV
Sbjct: 21 KWYVVDASGKVLGRLATRIAKILMGKHKPNYTPHVDTGDYVIVVNADKVVLTGKKLDQKV 80
Query: 75 YYWHTG-----KEL*R----IRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
YYWH+G K L + P+ L L K +K ++ ++L+++ EHP
Sbjct: 81 YYWHSGYPGGLKSLTARQMLEKHPERLIWLAVKRMLPKNRKGRKML-KRLKVYASPEHPH 139
Query: 126 GDRPLEP 132
+ EP
Sbjct: 140 QAQKPEP 146
>ref|ZP_00327165.1| COG0102: Ribosomal protein L13 [Trichodesmium erythraeum IMS101]
Length = 151
Score = 89.4 bits (220), Expect = 4e-17
Identities = 47/122 (38%), Positives = 73/122 (59%), Gaps = 8/122 (6%)
Query: 11 LDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKL 70
++G +W V DA+GQ LGRLA+ IA ++ GK+KPTYTP+ D GD IV+NA+ + VTG+K
Sbjct: 11 IEGKKWYVIDAEGQRLGRLATAIAMIIRGKNKPTYTPHMDTGDFVIVVNAEKVTVTGKKS 70
Query: 71 TDKVYYWHTGK------EL*RIRWPKTLQMLFAKLFCA*FQKTTY--VMDRKLRIFPGSE 122
+ K+Y H+G+ E+ + Q + + K + + KL+++PGS
Sbjct: 71 SQKLYRRHSGRPGGMKTEVFSKLQARLPQRIIEEAVFGMLPKNSLGRKLHNKLKVYPGSN 130
Query: 123 HP 124
HP
Sbjct: 131 HP 132
>gb|AAV24819.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 160
Score = 89.4 bits (220), Expect = 4e-17
Identities = 41/58 (70%), Positives = 49/58 (83%)
Query: 2 AAAGIKRIKLDGLRWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLN 59
A A ++RI LDGLRW VFDAKGQ+LGRLASQIA V+ GKDKPTY P+ ++ DMC+VLN
Sbjct: 102 ALADLRRINLDGLRWCVFDAKGQVLGRLASQIAVVLQGKDKPTYAPHVENRDMCVVLN 159
>gb|AAP07244.1| LSU ribosomal protein L13P [Bacillus cereus ATCC 14579]
gi|30018412|ref|NP_830043.1| LSU ribosomal protein L13P
[Bacillus cereus ATCC 14579]
gi|47525399|ref|YP_016748.1| ribosomal protein l13
[Bacillus anthracis str. 'Ames Ancestor']
gi|30260333|ref|NP_842710.1| ribosomal protein L13
[Bacillus anthracis str. Ames]
gi|49481687|ref|YP_034494.1| ribosomal protein L13 (50S
ribosomal protein L13) [Bacillus thuringiensis serovar
konkukian str. 97-27] gi|49183177|ref|YP_026429.1|
ribosomal protein L13 [Bacillus anthracis str. Sterne]
gi|30253654|gb|AAP24196.1| ribosomal protein L13
[Bacillus anthracis str. Ames]
gi|47570255|ref|ZP_00240906.1| ribosomal protein L13
[Bacillus cereus G9241] gi|47553079|gb|EAL11479.1|
ribosomal protein L13 [Bacillus cereus G9241]
gi|49333243|gb|AAT63889.1| ribosomal protein L13 (50S
ribosomal protein L13) [Bacillus thuringiensis serovar
konkukian str. 97-27] gi|47500547|gb|AAT29223.1|
ribosomal protein L13 [Bacillus anthracis str. 'Ames
Ancestor'] gi|49177104|gb|AAT52480.1| ribosomal protein
L13 [Bacillus anthracis str. Sterne]
gi|42779224|ref|NP_976471.1| ribosomal protein L13
[Bacillus cereus ATCC 10987] gi|42735139|gb|AAS39079.1|
ribosomal protein L13 [Bacillus cereus ATCC 10987]
Length = 145
Score = 88.2 bits (217), Expect = 1e-16
Identities = 51/129 (39%), Positives = 75/129 (57%), Gaps = 12/129 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+GQ LGRLAS++A+++ GK+KPT+TP+ D GD I++NA+ I +TG KL DK+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 74
Query: 75 YYWHTGK----------EL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YY HT E+ R +P + L K + V +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALEM-RTNYPVQMLELAIKGMLPKGRLGRQV-SKKLNVYAGAEHP 132
Query: 125 FGDRPLEPY 133
+ E Y
Sbjct: 133 HQAQKPEVY 141
>ref|NP_108552.1| ribosomal protein L13 [Mesorhizobium loti MAFF303099]
gi|14027745|dbj|BAB54338.1| ribosomal protein L13
[Mesorhizobium loti MAFF303099]
Length = 154
Score = 88.2 bits (217), Expect = 1e-16
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 11/120 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W + DA+G ++GRLA+ IA + GK KPT+TP+ DDGD IV+NA + TG+K TDKV
Sbjct: 14 KWILIDAEGLVVGRLATVIANHLRGKHKPTFTPHVDDGDNVIVINADKVVFTGKKFTDKV 73
Query: 75 YYWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YYWHTG ++L R+P+ + + M + LR++ G+EHP
Sbjct: 74 YYWHTGHPGGIKERTARQLLEGRFPERVVEKAVERMVPRGPLGRRQM-KNLRVYAGAEHP 132
>ref|NP_623797.1| Ribosomal protein L13 [Thermoanaerobacter tengcongensis MB4]
gi|20517259|gb|AAM25401.1| Ribosomal protein L13
[Thermoanaerobacter tengcongensis MB4]
Length = 143
Score = 88.2 bits (217), Expect = 1e-16
Identities = 42/81 (51%), Positives = 60/81 (73%), Gaps = 2/81 (2%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+G++LGRLASQIA ++MGK KPTYTP+ D GD +V+NA + +TG+KL DK
Sbjct: 14 KWFVIDAEGKVLGRLASQIAKILMGKHKPTYTPHVDTGDFVVVINADKVVLTGKKLEDKY 73
Query: 75 YYWHTGKE--L*RIRWPKTLQ 93
Y ++TG L +I++ K +Q
Sbjct: 74 YKYYTGYPGGLKQIQYKKLMQ 94
>ref|YP_077434.1| ribosomal protein L13 [Bacillus licheniformis ATCC 14580]
gi|52001854|gb|AAU21796.1| ribosomal protein L13
[Bacillus licheniformis ATCC 14580]
gi|52784005|ref|YP_089834.1| RplM [Bacillus
licheniformis ATCC 14580] gi|52346507|gb|AAU39141.1|
RplM [Bacillus licheniformis DSM 13]
Length = 145
Score = 88.2 bits (217), Expect = 1e-16
Identities = 51/129 (39%), Positives = 75/129 (57%), Gaps = 12/129 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA G+ LGRL++++A+++ GK KPTYTP+ D GD I++NA+ I +TG+KLTDK+
Sbjct: 15 KWLVVDAAGKTLGRLSTEVASILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKI 74
Query: 75 YYWHT----------GKEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YY HT E+ R +P+ + L K M +KL ++ GSEHP
Sbjct: 75 YYRHTQHPGGLKSRTALEM-RTNYPEKMLELAIKGMLP-KGSLGRQMFKKLNVYRGSEHP 132
Query: 125 FGDRPLEPY 133
+ E Y
Sbjct: 133 HQAQKPEVY 141
>ref|ZP_00390547.1| COG0102: Ribosomal protein L13 [Bacillus anthracis str. A2012]
Length = 140
Score = 88.2 bits (217), Expect = 1e-16
Identities = 51/129 (39%), Positives = 75/129 (57%), Gaps = 12/129 (9%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+GQ LGRLAS++A+++ GK+KPT+TP+ D GD I++NA+ I +TG KL DK+
Sbjct: 10 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKI 69
Query: 75 YYWHTGK----------EL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHP 124
YY HT E+ R +P + L K + V +KL ++ G+EHP
Sbjct: 70 YYRHTNHPGGLKQRTALEM-RTNYPVQMLELAIKGMLPKGRLGRQV-SKKLNVYAGAEHP 127
Query: 125 FGDRPLEPY 133
+ E Y
Sbjct: 128 HQAQKPEVY 136
>ref|YP_081753.1| ribosomal protein L13 (50S ribosomal protein L13) [Bacillus cereus
E33L] gi|51978543|gb|AAU20093.1| ribosomal protein L13
(50S ribosomal protein L13) [Bacillus cereus E33L]
Length = 145
Score = 88.2 bits (217), Expect = 1e-16
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+GQ LGRLAS++A+++ GK+KPT+TP+ D GD I++NA+ I +TG KL DK+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKNKPTFTPHVDTGDHVIIINAEKIHLTGNKLNDKM 74
Query: 75 YYWHTGKE---------L*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEHPF 125
YY HT + R +P + L K + V +KL ++ G+EHP
Sbjct: 75 YYRHTNHPGGLKQRTALVLRTNYPVQMLELAIKGMLPKGRLGRQV-SKKLNVYAGAEHPH 133
Query: 126 GDRPLEPY 133
+ E Y
Sbjct: 134 QAQKPEVY 141
>gb|AAU37890.1| RplM protein [Mannheimia succiniciproducens MBEL55E]
gi|52425338|ref|YP_088475.1| RplM protein [Mannheimia
succiniciproducens MBEL55E]
Length = 147
Score = 87.4 bits (215), Expect = 2e-16
Identities = 50/118 (42%), Positives = 68/118 (57%), Gaps = 12/118 (10%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W V DA G+ LGRLA+++A+ + GK K YTP+ D GD IV+NA +AVTGRK TDKVY
Sbjct: 20 WYVVDATGKTLGRLATELASRLRGKHKAEYTPHVDTGDYIIVINADKVAVTGRKETDKVY 79
Query: 76 YWHTG----------KEL*RIRWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
YWHTG KE+ R +++ + M RKL+++ GS+H
Sbjct: 80 YWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPK--GPLGRAMFRKLKVYAGSQH 135
>gb|AAL94533.1| LSU ribosomal protein L13P [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586] gi|19703672|ref|NP_603234.1| LSU
ribosomal protein L13P [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 144
Score = 87.4 bits (215), Expect = 2e-16
Identities = 53/117 (45%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 16 WRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKVY 75
W +DA+GQILGRLA +IA +MGK+K T+TP+ D GD +V N + I VTG+KLTDKVY
Sbjct: 17 WHHYDAEGQILGRLAVEIAKKLMGKEKLTFTPHIDGGDYVVVTNVEKIVVTGKKLTDKVY 76
Query: 76 YWHTG-------KEL*RI--RWPKTLQMLFAKLFCA*FQKTTYVMDRKLRIFPGSEH 123
Y H+G ++L I + P+ L ML K K +LR+F G+EH
Sbjct: 77 YNHSGFPGGIRARKLGEILAKKPEELLMLAVKRMLP-KNKLGRQQLTRLRVFAGAEH 132
>dbj|BAB03887.1| 50S ribosomal protein L13 [Bacillus halodurans C-125]
gi|15612731|ref|NP_241034.1| 50S ribosomal protein L13
[Bacillus halodurans C-125] gi|25295169|pir||H83670
ribosomal protein L13 rplM [imported] - Bacillus
halodurans (strain C-125)
Length = 145
Score = 87.0 bits (214), Expect = 2e-16
Identities = 38/66 (57%), Positives = 52/66 (78%)
Query: 15 RWRVFDAKGQILGRLASQIATVVMGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTDKV 74
+W V DA+GQ LGRLAS++A+++ GK KPTYTP+ D GD I++NA+ I +TG KL DK+
Sbjct: 15 KWYVVDAEGQTLGRLASEVASILRGKHKPTYTPHVDTGDHVIIINAEKIHLTGNKLQDKI 74
Query: 75 YYWHTG 80
YY H+G
Sbjct: 75 YYRHSG 80
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.327 0.140 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 287,782,655
Number of Sequences: 2540612
Number of extensions: 11264215
Number of successful extensions: 84847
Number of sequences better than 10.0: 371
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 84120
Number of HSP's gapped (non-prelim): 571
length of query: 181
length of database: 863,360,394
effective HSP length: 120
effective length of query: 61
effective length of database: 558,486,954
effective search space: 34067704194
effective search space used: 34067704194
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC140670.5