BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.14 - phase: 0 /pseudo
(771 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172503.1| U2 snRNP auxiliary factor-related [Arabidopsis ... 498 e-139
gb|AAD32882.1| F14N23.20 [Arabidopsis thaliana] 429 e-118
ref|XP_466221.1| U2 snRNP auxiliary factor-like protein [Oryza s... 197 8e-49
gb|AAD28792.1| U2 small nuclear ribonucleoprotein auxiliary fact... 179 3e-43
gb|AAA98669.1| U2AFBPL [Homo sapiens] gi|2833265|sp|Q15695|U2AFL... 177 2e-42
dbj|BAA08532.1| U2AF1-RS1 [Homo sapiens] 177 2e-42
dbj|BAA08533.1| U2AF1-RS2 [Homo sapiens] gi|2833266|sp|Q15696|U2... 176 3e-42
ref|NP_033479.1| U2 small nuclear ribonucleoprotein auxiliary fa... 167 2e-39
ref|NP_035793.1| U2 small nuclear ribonucleoprotein auxiliary fa... 163 2e-38
dbj|BAC27017.1| unnamed protein product [Mus musculus] 163 2e-38
gb|AAB30301.1| human U2af35 homolog [Mus musculus] 162 3e-38
ref|XP_392139.1| PREDICTED: similar to U2 small nuclear ribonucl... 144 1e-32
ref|XP_520951.1| PREDICTED: similar to U2 small nuclear ribonucl... 137 2e-30
ref|XP_639991.1| hypothetical protein DDB0218665 [Dictyostelium ... 112 4e-23
emb|CAF29556.1| U2 snRNP auxiliary factor small subunit [Homo sa... 103 3e-20
gb|AAM34646.1| U2 small nuclear RNA auxiliary factor small subun... 101 8e-20
emb|CAF96846.1| unnamed protein product [Tetraodon nigroviridis] 101 8e-20
gb|AAH01923.1| U2 small nuclear RNA auxillary factor 1 [Homo sap... 100 2e-19
ref|NP_077149.1| U2 small nuclear ribonucleoprotein auxiliary fa... 100 2e-19
ref|XP_514926.1| PREDICTED: similar to cystathionine beta-syntha... 100 2e-19
>ref|NP_172503.1| U2 snRNP auxiliary factor-related [Arabidopsis thaliana]
Length = 757
Score = 498 bits (1282), Expect = e-139
Identities = 312/795 (39%), Positives = 426/795 (53%), Gaps = 121/795 (15%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAF 63
+RKEKRKA+KKLKRK+ RKEIA KER E +A+LNDP E+ + +E+++A R E++ F
Sbjct: 34 SRKEKRKAMKKLKRKQVRKEIAAKEREEAKAKLNDPAEQERLKAIEEEDARRREKELKDF 93
Query: 64 EEREKAWII------KQQQQRDLEEEQQQLSQRDLEQ-------HESELEEEEEEDVDDD 110
EE E+AW K++++ + + E+++ +DLE+ E E+E+ + +
Sbjct: 94 EESERAWREAMEIKRKKEEEEEAKREEEERRWKDLEELRKLEASGNDECGEDEDGEYEYI 153
Query: 111 DDGRPEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPP--- 167
++G PEII+ GNEII+ KKN + H + E +RPTSNP PP
Sbjct: 154 EEGPPEIIFQGNEIIL-KKNKVRVPKKSVVQVDGHESSNAEFVLQISDRPTSNPLPPGSE 212
Query: 168 --------ESPSQPLHNVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSC 219
S Q L +VAQ+ PNFGTE DKAHCPFHLKT ACRFG RCSRVHFYP+KSC
Sbjct: 213 ASANYQNVSSAQQILESVAQEVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPNKSC 272
Query: 220 TLLIKNMYNGPGLAWEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMH 279
TLL+KNMYNGPG+ WEQDEGLE + + +
Sbjct: 273 TLLMKNMYNGPGITWEQDEGLEYTDEEAELCYEEFYEDVHTE-----------------F 315
Query: 280 LKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRW 339
LK+GE+VNFKVC+NGSFHL+GNVYV Y+ L+SA+LAY S+NGRYFAGKQV+C+FVN++RW
Sbjct: 316 LKYGELVNFKVCRNGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNISRW 375
Query: 340 KVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSD 399
KVAICGEYMKS KTCS G+ACNFIHCFRNPGGDYEWAD D+PPP+FW+ +M +LFG+SD
Sbjct: 376 KVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHKMTSLFGYSD 435
Query: 400 NCEMSRVHGNFSALKHSSNILETDSDREMGQLYGGRSSRRRQEDER--------KQRTLD 451
M H + +L S + L TDS R+ R SR R D + R
Sbjct: 436 EKHME--HESSGSLNDSISDLSTDSHRQ-----PSRRSRSRDHDHANVGSTPSYRSRKYH 488
Query: 452 EEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEH-----TRKSSFNWNKDDNSR 506
+ + +++ R++ D D ++R+ Y E T W++
Sbjct: 489 GDTQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKDTLHRDSRWSEHSPGH 548
Query: 507 R------HEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDGRK 560
R H YSD D + + R+G ++ R D + D ++D RK
Sbjct: 549 RVGRKRIHGRYSDDDSA-----DGDDYGRRGTGHKRKPRRGTDSGVQEQMDNEKD---RK 600
Query: 561 HHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKW 620
H S RK SR + S +DK+ GHE D + ++K H R+ +
Sbjct: 601 THRSSRKHSR----------EGSSADKEEGHEH------DRVHTVSDKSH--RERSKHRH 642
Query: 621 NRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDW 680
R S +E S E RH +H S +K RS + S V +S+ D+DR ++
Sbjct: 643 ERSSSRYSHEEDSTESRHH-QHKESDKK----RSVETSPVGYQSDKDRDRSKQRQR---- 693
Query: 681 DTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDSGY 740
S D E KGK + N D + E RHR + K R Q+SD
Sbjct: 694 -YKSDDPESDQSRKGKRQSEENSDRETH------KERRHRHR------KRRRTQNSD--- 737
Query: 741 GIDESDKDKGEMEAQ 755
D++ K+ E+E +
Sbjct: 738 --DQNPKESEEVEEE 750
>gb|AAD32882.1| F14N23.20 [Arabidopsis thaliana]
Length = 836
Score = 429 bits (1104), Expect = e-118
Identities = 299/857 (34%), Positives = 420/857 (48%), Gaps = 166/857 (19%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAF 63
+RKEKRKA+KKLKRK+ RKEIA KER E +A+LNDP E+ + +E+++A R E++ F
Sbjct: 34 SRKEKRKAMKKLKRKQVRKEIAAKEREEAKAKLNDPAEQERLKAIEEEDARRREKELKDF 93
Query: 64 EEREKAWII------KQQQQRDLEEEQQQLSQRDLEQ--------------------HES 97
EE E+AW K++++ + + E+++ +DLE+
Sbjct: 94 EESERAWREAMEIKRKKEEEEEAKREEEERRWKDLEELRKLEVVCFVDCCQFLIHIVGND 153
Query: 98 ELEEEEEEDVDDDDDGRPEIIWLGNE-IIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHH 156
E E+E+ + + ++G PEII+ GNE I+ + K P + + H HH
Sbjct: 154 ECGEDEDGEYEYIEEGPPEIIFQGNEIILKKNKVRVPKKSVVQVDGHEVIDHHLVPMRSL 213
Query: 157 DNRPTSNP----FPPESPSQPLHNVAQQPPNFGT--------------------ELDKAH 192
R + + E QP+ + + E+DKAH
Sbjct: 214 FCRFLTGLLQILYLREVKLQPIIRMLVLRNRYWRVLHKKYPTLELSRCLLYPLIEMDKAH 273
Query: 193 CPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*LSGSSPIMA* 252
CPFHLKT ACRFG RCSRVHFYP+KSCTLL+KNMYNGPG+ WEQDEGLE L+ +
Sbjct: 274 CPFHLKTGACRFGQRCSRVHFYPNKSCTLLMKNMYNGPGITWEQDEGLELLTLIYSLSLF 333
Query: 253 GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCK-------------------- 292
+Q + + + T LK+GE+VNFKVC+
Sbjct: 334 PPSLQYTDEEAELCYEEFYEDVHTEF-LKYGELVNFKVCRFSSAPSPPFPSFPLPPLFFL 392
Query: 293 ---------------NGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLT 337
NGSFHL+GNVYV Y+ L+SA+LAY S+NGRYFAGKQV+C+FVN++
Sbjct: 393 LSIISHRFILYQIRINGSFHLKGNVYVHYRSLESAILAYQSINGRYFAGKQVNCEFVNIS 452
Query: 338 RWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGH 397
RWKVAICGEYMKS KTCS G+ACNFIHCFRNPGGDYEWAD D+PPP+FW+ +M +LFG+
Sbjct: 453 RWKVAICGEYMKSRLKTCSRGSACNFIHCFRNPGGDYEWADHDRPPPRFWIHKMTSLFGY 512
Query: 398 SDNCEMSRVHGNFSALKHSSNILETDSDREMGQLYGGRSSRRRQEDER--------KQRT 449
SD M H + +L S + L TDS R+ R SR R D + R
Sbjct: 513 SDEKHME--HESSGSLNDSISDLSTDSHRQ-----PSRRSRSRDHDHANVGSTPSYRSRK 565
Query: 450 LDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEH-----TRKSSFNWNKDDN 504
+ + +++ R++ D D ++R+ Y E T W++
Sbjct: 566 YHGDTQDSTREDKLRRHAENCHDGDDSPSRDGSLEREMYKERRYAKDTLHRDSRWSEHSP 625
Query: 505 SRR------HEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDG 558
R H YSD D + + R+G ++ R D + D ++D
Sbjct: 626 GHRVGRKRIHGRYSDDDSA-----DGDDYGRRGTGHKRKPRRGTDSGVQEQMDNEKD--- 677
Query: 559 RKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQ 618
RK H S RK SR + S +DK+ GHE D + ++K H R+
Sbjct: 678 RKTHRSSRKHSR----------EGSSADKEEGHEH------DRVHTVSDKSH--RERSKH 719
Query: 619 KWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDV 678
+ R S +E S E RH +H S +K RS + S V +S+ D+DR ++
Sbjct: 720 RHERSSSRYSHEEDSTESRHH-QHKESDKK----RSVETSPVGYQSDKDRDRSKQRQR-- 772
Query: 679 DWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDS 738
S D E KGK + N D + E RHR + K R Q+SD
Sbjct: 773 ---YKSDDPESDQSRKGKRQSEENSDRETH------KERRHRHR------KRRRTQNSD- 816
Query: 739 GYGIDESDKDKGEMEAQ 755
D++ K+ E+E +
Sbjct: 817 ----DQNPKESEEVEEE 829
>ref|XP_466221.1| U2 snRNP auxiliary factor-like protein [Oryza sativa (japonica
cultivar-group)] gi|46390906|dbj|BAD16421.1| U2 snRNP
auxiliary factor-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 401
Score = 197 bits (502), Expect = 8e-49
Identities = 142/411 (34%), Positives = 197/411 (47%), Gaps = 45/411 (10%)
Query: 319 VNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWAD 378
+NGRYFAGKQ++C+FV +TRWKVAICGEYM+S +KTCS G ACNFIHCFRNPGGDYEWAD
Sbjct: 1 MNGRYFAGKQITCEFVAVTRWKVAICGEYMRSRFKTCSRGIACNFIHCFRNPGGDYEWAD 60
Query: 379 SDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSALKHSSNILETDSDREMGQLYGGRSSR 438
D PPP++W+++M ALFG SD+ ++G S H +D R SR
Sbjct: 61 WDNPPPRYWIRKMAALFGPSDD----SIYGKPSDTPHLERSQSSDRRRPRSSDPRYTPSR 116
Query: 439 RRQEDERKQR-TLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEEVDRKKYHEHTRKSSF 497
R ED KQ + D + + + +H R++ S SDK E+ K T K S
Sbjct: 117 TRDEDAHKQHSSRDYSHSKHERSSHTEHRRDRKESSASDKHRHREIKDK-----TSKYSS 171
Query: 498 NWNKDDNSRRH--EEYSDVDRVTINR-DNEKPHDRKGRNSQK------SNRDSRDWIYEA 548
N + S ++ EE +D + D+ K RK R+ ++ S+ S D+I +
Sbjct: 172 NMESERESHKYMREEKHRIDHGNGGKGDHGKVRSRKNRSERQESLEPGSSGRSSDFI-DQ 230
Query: 549 GCDEDRDGD---GRKHHISRRKG-SRHQSRDNSNVTD-------ESESDKDRGHEEYSDV 597
E G GR H +RR+ H +R +S D +S + K + H + SD
Sbjct: 231 DTTESPSGSKSTGRHHKKTRRQSLEEHSTRRSSRHRDMEDDGRGQSVAVKRKDHHDTSDD 290
Query: 598 DW----DTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHR 653
W + + E Q+ + K Y A SD + R S K R R
Sbjct: 291 RWVATNSDVDSDLETQYQRSSSEGSKLGMK-----YHARSDSETGYGRSRSGTTKSRRER 345
Query: 654 SRDNSN--VADESESDKDRGHEKYSDVDWDTMSR---DNEKQHDSKGKNSQ 699
R + N +D E D S W + SR +N H S+ K S+
Sbjct: 346 KRQSGNGERSDTLEVTSDSDTRDMSSDAWRSRSRSSDENLSTHRSRRKRSR 396
Score = 38.5 bits (88), Expect = 0.84
Identities = 46/192 (23%), Positives = 69/192 (34%), Gaps = 27/192 (14%)
Query: 582 ESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKR 641
E DR SD + +E H Q +RD + +E S + R R
Sbjct: 95 ERSQSSDRRRPRSSDPRYTPSRTRDEDAH------KQHSSRDYSHSKHERSSHTEHRRDR 148
Query: 642 HHSSQRKGSRHR------SRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKG 695
SS RHR S+ +SN+ E ES K EK+ + D+ K K
Sbjct: 149 KESSASDKHRHREIKDKTSKYSSNMESERESHKYMREEKHRIDHGNGGKGDHGKVRSRKN 208
Query: 696 KNSQKR------NGDSKYQIDE-------AGSDEDRHRKKHLSSQMKESRHQSSDSGYGI 742
++ ++ +G S ID+ RH KK ++E H + S
Sbjct: 209 RSERQESLEPGSSGRSSDFIDQDTTESPSGSKSTGRHHKKTRRQSLEE--HSTRRSSRHR 266
Query: 743 DESDKDKGEMEA 754
D D +G+ A
Sbjct: 267 DMEDDGRGQSVA 278
Score = 35.8 bits (81), Expect = 5.5
Identities = 35/142 (24%), Positives = 56/142 (38%), Gaps = 12/142 (8%)
Query: 634 DEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDS 693
DED H K+H S S+H + +E +DR SD +D ++ S
Sbjct: 119 DEDAH-KQHSSRDYSHSKHER------SSHTEHRRDRKESSASDKHRHREIKDKTSKYSS 171
Query: 694 K---GKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDSGYGIDESD-KDK 749
+ S K + K++ID + H K S + + R +S + G SD D+
Sbjct: 172 NMESERESHKYMREEKHRIDHGNGGKGDHGKVR-SRKNRSERQESLEPGSSGRSSDFIDQ 230
Query: 750 GEMEAQHGYSRKSSRHKRSGLQ 771
E+ G HK++ Q
Sbjct: 231 DTTESPSGSKSTGRHHKKTRRQ 252
>gb|AAD28792.1| U2 small nuclear ribonucleoprotein auxiliary factor subunit-related
protein [Takifugu rubripes]
Length = 605
Score = 179 bits (454), Expect = 3e-43
Identities = 174/739 (23%), Positives = 300/739 (40%), Gaps = 161/739 (21%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAF 63
++K+++ AL+K +RK +R+ +A+ + N+ E K E + +ER +
Sbjct: 14 SQKQRKVALRKERRKRKRQALAQARDHDFNNGDNNVSAEEKED--EDNDVAELERQHLHE 71
Query: 64 EEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEIIWLGNE 123
E EK + +++ + E E+ L +++ E+ + E E + ++++ + ++ E
Sbjct: 72 EWMEKERVAQEEFRLKREREEAVLKRKEEEERIIKEEWEAQRKREEEEKEQKQLEKRDRE 131
Query: 124 IIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNVAQQPPN 183
+QK + +++ + P NP P + N
Sbjct: 132 EAVQKMLD------------------EAENQLQNGGPWMNPEAP---------LTVNSEN 164
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGL--AWEQDEGLE 241
+GTE D ++CPF LKT +CRFGDRCSR H YP S T++I++M+ G+ A D ++
Sbjct: 165 YGTERDVSNCPFFLKTGSCRFGDRCSRKHVYPTASPTMMIRSMFKTFGMEEARRDDYDID 224
Query: 242 *LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGN 301
S + ++ L G+++ FKV N HLRGN
Sbjct: 225 ACLEHSEEELYESFLEFYHDVLPEF-------------KSVGKVLQFKVSCNHEPHLRGN 271
Query: 302 VYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTAC 361
VYVQ++ + A+ NGR++AG+Q+ C+ +TRWK AICG + + + C G C
Sbjct: 272 VYVQFETEEQCKEAFIKFNGRWYAGRQLHCEMCPVTRWKNAICGLFDR---QKCPKGKHC 328
Query: 362 NFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSALKHSSNILE 421
NF+H FRNPG + FW E
Sbjct: 329 NFLHVFRNPGKE------------FW---------------------------------E 343
Query: 422 TDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLE 481
D D M RS R Q D R + W + R R+
Sbjct: 344 ADRDLHMSP---DRSVRGSQRDGRHSERYGDRWQRRCSRSPPRSERS------------- 387
Query: 482 EVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHD-RKGRNSQKSNRD 540
H+R++ W+ +R++ H R+ R+S+ + D
Sbjct: 388 ---------HSRRAGDRWSSR-----------------SRESAMSHPFREDRSSRSRHSD 421
Query: 541 SR-DWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESES-DKDRGHEEYSDVD 598
R DW +DR+ D + + G R++S + + ++ E+ K+RG S
Sbjct: 422 RRNDWYQSRSTTQDRETDRLRR--KSKDGYRNRSEERYSRGEKRETRSKERGKSRSS--- 476
Query: 599 WDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNS 658
SRE ++ S R+ +K R A + RH KR S++K +H+ R S
Sbjct: 477 ----SREGKRTKRSRERSPKK--RSEHENNGSADCKKRRHHKRTKKSKKKSKKHKKR--S 528
Query: 659 NVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDR 718
V+D S + EK S + +S + Q ++ Q N ++D +D D
Sbjct: 529 RVSDAGTSSAESDTEKESPGEIKNLSERSPSQETPDAESLQNPN-----EVDGNHADSD- 582
Query: 719 HRKKHLSSQMKESRHQSSD 737
+ S ++ES+ ++
Sbjct: 583 -----MISPVEESKQPDTE 596
Score = 58.9 bits (141), Expect = 6e-07
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 21/206 (10%)
Query: 551 DEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQH 610
D G R S R G R Q R S +R H + W + SRE+ H
Sbjct: 353 DRSVRGSQRDGRHSERYGDRWQRR-----CSRSPPRSERSHSRRAGDRWSSRSRESAMSH 407
Query: 611 G-SNGRNSQKWNRDSRYRIYEAGSD-EDRHRKRHHSSQRKGSRHRSRDNSNVADESES-D 667
R+S+ + D R Y++ S +DR R + G R+RS + + ++ E+
Sbjct: 408 PFREDRSSRSRHSDRRNDWYQSRSTTQDRETDRLRRKSKDGYRNRSEERYSRGEKRETRS 467
Query: 668 KDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRHRKKHLSSQ 727
K+RG + S + R E+ + ++ + D K + RH K+ S+
Sbjct: 468 KERGKSRSSSREGKRTKRSRERSPKKRSEHENNGSADCKKR---------RHHKRTKKSK 518
Query: 728 MKESRHQS----SDSGYGIDESDKDK 749
K +H+ SD+G ESD +K
Sbjct: 519 KKSKKHKKRSRVSDAGTSSAESDTEK 544
>gb|AAA98669.1| U2AFBPL [Homo sapiens] gi|2833265|sp|Q15695|U2AFL_HUMAN U2 small
nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit related-protein 1 (U2(RNU2) small nuclear RNA
auxillary factor 1-like 1)
Length = 479
Score = 177 bits (448), Expect = 2e-42
Identities = 142/495 (28%), Positives = 238/495 (47%), Gaps = 84/495 (16%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERI-ERDRIA 62
+ K+ R ALKK KRK+RR+E+A RL + L+ EEE I +Q E E++ ER+R
Sbjct: 20 SHKKYRAALKKEKRKKRRQELA---RLRDSG-LSQEEEEDTFIEEQQLEEEKLLERER-- 73
Query: 63 FEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEE--EEEDVDDDDDGRPEI 117
E + W++++Q+ ++ +++E+++ +++ LE+ E +L+E+ E++ + +++ + +
Sbjct: 74 -ERLHEEWLLREQKAQEEFRIKKEKEEAAKKWLEEQERKLKEQWKEQQRKEREEEEQKQQ 132
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNV 177
E +QK Q +++ ++ NP PP
Sbjct: 133 EKKEKEEAVQKMLD------------------QAENDLENSTTWQNPEPPVDFRV----- 169
Query: 178 AQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA---- 233
E D+A+CPF+ KT ACRFGDRCSR H +P S TLLIK+M+ G+
Sbjct: 170 --------MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRR 221
Query: 234 --WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVC 291
++ D LE + + Q+ D + ++ G+++ FKV
Sbjct: 222 DDYDPDASLE---------------YSEEETYQQFLDFYEDVLPEFKNV--GKVIQFKVS 264
Query: 292 KNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSG 351
N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWK+AICG +
Sbjct: 265 CNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---E 321
Query: 352 YKTCSHGTACNFIHCFRNPGGDYEWAD------SDKPPPKFWV-KEMVALFGHSDNCEMS 404
+ C G CNF+H FRNP ++ A+ SD+ F E GH D+ S
Sbjct: 322 IQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQTGSSFGKNSERREKMGHHDH-YYS 380
Query: 405 RVHGNFSALKHSSNILETDSDREMGQLYGGRS------SRRRQEDERKQRTLDEEWNTNY 458
R G + + +S+R+ G +S SR R + R W+
Sbjct: 381 RQRGRRNPSPDHTYKRNGESERKKSSHRGKKSHKRTSKSRERHNSPSRGRNRHRSWDQGR 440
Query: 459 KDNHKRKYRNKTSDS 473
+ +R +R+++ S
Sbjct: 441 RSQSRRSHRSRSQSS 455
>dbj|BAA08532.1| U2AF1-RS1 [Homo sapiens]
Length = 479
Score = 177 bits (448), Expect = 2e-42
Identities = 142/495 (28%), Positives = 238/495 (47%), Gaps = 84/495 (16%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERI-ERDRIA 62
+ K+ R ALKK KRK+RR+E+A RL + L+ EEE I +Q E E++ ER+R
Sbjct: 20 SHKKYRAALKKEKRKKRRQELA---RLRDSG-LSQEEEEDTFIEEQQLEEEKLLERER-- 73
Query: 63 FEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEE--EEEDVDDDDDGRPEI 117
E + W++++Q+ ++ +++E+++ +++ LE+ E +L+E+ E++ + +++ + +
Sbjct: 74 -ERLHEEWLLREQKAQEEFRIKKEKEEAAKKWLEEQERKLKEQWKEQQRKEREEEEQKQQ 132
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNV 177
E +QK Q +++ ++ NP PP
Sbjct: 133 EKKEKEEAVQKMLD------------------QAENDLENSTTWQNPEPPVDFRV----- 169
Query: 178 AQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA---- 233
E D+A+CPF+ KT ACRFGDRCSR H +P S TLLIK+M+ G+
Sbjct: 170 --------MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRR 221
Query: 234 --WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVC 291
++ D LE + + Q+ D + ++ G+++ FKV
Sbjct: 222 DDYDPDASLE---------------YSEEETYQQFLDFYEDVLPEFKNV--GKVIQFKVS 264
Query: 292 KNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSG 351
N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWK+AICG +
Sbjct: 265 CNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF---E 321
Query: 352 YKTCSHGTACNFIHCFRNPGGDYEWAD------SDKPPPKFWV-KEMVALFGHSDNCEMS 404
+ C G CNF+H FRNP ++ A+ SD+ F E GH D+ S
Sbjct: 322 IQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSSDQTGSSFGKNSERREKMGHHDH-YYS 380
Query: 405 RVHGNFSALKHSSNILETDSDREMGQLYGGRS------SRRRQEDERKQRTLDEEWNTNY 458
R G + + +S+R+ G +S SR R + R W+
Sbjct: 381 RQRGRRNPSPDHTYKRNGESERKKSSHRGKKSHKRTSKSRERHNSPSRGRNRHRSWDQGR 440
Query: 459 KDNHKRKYRNKTSDS 473
+ +R +R+++ S
Sbjct: 441 RSQSRRSHRSRSQSS 455
>dbj|BAA08533.1| U2AF1-RS2 [Homo sapiens] gi|2833266|sp|Q15696|U2AFM_HUMAN U2 small
nuclear ribonucleoprotein auxiliary factor 35 kDa
subunit related-protein 2 (U2(RNU2) small nuclear RNA
auxillary factor 1-like 2) gi|4827046|ref|NP_005080.1|
U2 small nuclear ribonucleoprotein auxiliary factor,
small subunit-related protein 2 [Homo sapiens]
Length = 482
Score = 176 bits (445), Expect = 3e-42
Identities = 149/550 (27%), Positives = 239/550 (43%), Gaps = 121/550 (22%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQ--EAERIERDRI 61
+ K+ R ALKK KRK+RR+E+A RL + L+ EEE + EQQ E + +ER+R
Sbjct: 14 SHKKYRAALKKEKRKKRRQELA---RLRDSG-LSQKEEEEDTFIEEQQLEEEKLLERERQ 69
Query: 62 AFEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEEEEE----DVDDDDDGR 114
E W++++Q+ ++ +++E+++ +++ E+ E +L+E+ EE + ++++ R
Sbjct: 70 RLHEE---WLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKEREEEEQKR 126
Query: 115 PEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPL 174
E +K+ L + + Q ++E + NP PP
Sbjct: 127 QE----------KKEKEEALQKMLD----------QAENELENGTTWQNPEPPVDFRV-- 164
Query: 175 HNVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA- 233
E D+A+CPF+ KT ACRFGDRCSR H +P S TLLIK+M+ G+
Sbjct: 165 -----------MEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQ 213
Query: 234 -----WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNF 288
++ D LE + + Q+ D + ++ G+++ F
Sbjct: 214 CRRDDYDPDASLE---------------YSEEETYQQFLDFYEDVLPEFKNV--GKVIQF 256
Query: 289 KVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYM 348
KV N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWK+AICG +
Sbjct: 257 KVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICGLF- 315
Query: 349 KSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHG 408
+ C G CNF+H FRNP ++ A+ D
Sbjct: 316 --EIQQCPRGKHCNFLHVFRNPNNEFWEANRD---------------------------- 345
Query: 409 NFSALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRN 468
+ DR G +G S RR + N +H K
Sbjct: 346 -----------IYLSPDR-TGSSFGKNSERRERMGHHDDYYSRLRGRRNPSPDHSYKRNG 393
Query: 469 KTSDSDSDKEGLEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHD 528
++ S G KK H+ T KS N R + D R +R +
Sbjct: 394 ESERKSSRHRG------KKSHKRTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRS 447
Query: 529 RKGRNSQKSN 538
R+ R S+ +
Sbjct: 448 RRSRRSRSQS 457
Score = 40.0 bits (92), Expect = 0.29
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 574 RDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGS 633
R S+ SE + GH + D R N S RN + + SR+R ++
Sbjct: 352 RTGSSFGKNSERRERMGHHD--DYYSRLRGRRNPSPDHSYKRNGESERKSSRHRGKKSHK 409
Query: 634 DEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDS 693
+ R+RH+S R +R RSRD S + R SR + Q S
Sbjct: 410 RTSKSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRR----------SRRSRSQSSS 459
Query: 694 KGKNSQKRNGDSK 706
+ ++ +R ++
Sbjct: 460 RSRSRGRRRSGNR 472
Score = 37.0 bits (84), Expect = 2.5
Identities = 39/142 (27%), Positives = 56/142 (38%), Gaps = 16/142 (11%)
Query: 520 NRDNEKPHDRKGRNSQKSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNS-- 577
NRD DR G + K N + R+ G +D + SR +G R+ S D+S
Sbjct: 343 NRDIYLSPDRTGSSFGK-NSERRE---RMGHHDD--------YYSRLRGRRNPSPDHSYK 390
Query: 578 -NVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDED 636
N E +S + RG + + + R N + G N S+ +R R
Sbjct: 391 RNGESERKSSRHRGKKSHKRTS-KSRERHNSRSRGRNRDRSRDRSRGRGSRSRSRSRSRR 449
Query: 637 RHRKRHHSSQRKGSRHRSRDNS 658
R R SS R SR R R +
Sbjct: 450 SRRSRSQSSSRSRSRGRRRSGN 471
Score = 36.6 bits (83), Expect = 3.2
Identities = 33/113 (29%), Positives = 44/113 (38%), Gaps = 13/113 (11%)
Query: 655 RDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGS 714
R S+ SE + GH D SR +++ S +S KRNG+S E S
Sbjct: 352 RTGSSFGKNSERRERMGHHD------DYYSRLRGRRNPSPD-HSYKRNGES-----ERKS 399
Query: 715 DEDRHRKKHLSSQMKESRHQSSDSGYGIDESDKDKGEMEAQHGYSRKSSRHKR 767
R +K H + RH S G D S +D+ SR SR R
Sbjct: 400 SRHRGKKSHKRTSKSRERHNSRSRGRNRDRS-RDRSRGRGSRSRSRSRSRRSR 451
>ref|NP_033479.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1,
related sequence 2 [Mus musculus]
gi|2842648|sp|Q62377|U2AFM_MOUSE U2 small nuclear
ribonucleoprotein auxiliary factor 35 kDa subunit
related-protein 2 (U2(RNU2) small nuclear RNA auxillary
factor 1-like 2) gi|927659|dbj|BAA08143.1| U2af1-rs2
[Mus musculus]
Length = 462
Score = 167 bits (422), Expect = 2e-39
Identities = 147/524 (28%), Positives = 232/524 (44%), Gaps = 120/524 (22%)
Query: 5 RKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFE 64
+K RK L++KERRK + EA L EEE + E +R+E +R+ E
Sbjct: 15 QKLSRKKYLALRKKERRKRRRQALARLREAELAQKEEEEDPLA----EEKRLEEERLLEE 70
Query: 65 EREKA---WIIKQQQQRD------LEEEQQQLSQRDLEQH-ESELEEEEEEDVDDDDDGR 114
ER++ W++++++ ++ +EE+ + + +LE+ ++E EE++ ++ ++++ R
Sbjct: 71 ERQRLHEEWLLREEKAQEEFRAKKKKEEEARKRKEELERKLKAEWEEQQRKEREEEEQKR 130
Query: 115 PEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPL 174
E E +QK Q ++E + NP PP
Sbjct: 131 QEK--REREEAVQKMLD------------------QAENELENGGTWQNPEPPMDIRV-- 168
Query: 175 HNVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA- 233
E D+A+CPF+ KT ACRFGDRCSR H +P S TLLIK M+ G+
Sbjct: 169 -----------LEKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQ 217
Query: 234 -----WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNF 288
++ D LE + Q+ D + + G+++ F
Sbjct: 218 CRRDDYDPDSSLE---------------FSEEEIYQQFLDFYYDVLPEFKSV--GKVIQF 260
Query: 289 KVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYM 348
KV N HLRGNVYVQY+ + A++ NGR++AG+Q+ C+F +TRWK+AICG +
Sbjct: 261 KVSCNLEPHLRGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEFCPVTRWKMAICGLF- 319
Query: 349 KSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHG 408
+ C G CNF+H FRNP +Y A+ D P W + FG
Sbjct: 320 --EVQQCPRGKHCNFLHVFRNPNNEYRDANRDLYPSPDWTS---SSFGK----------- 363
Query: 409 NFSALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRN 468
N + +S+ E Y GRS RRR+ D +KR
Sbjct: 364 NSERRERASHYDE----------YYGRSRRRRRSPS--------------PDFYKR---- 395
Query: 469 KTSDSDSDKEGLEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYS 512
+ +SD++ KK H + KS + SRR +++S
Sbjct: 396 ---NGESDRKSSSRHRVKKSHRYGMKS--RERRSSPSRRRKDHS 434
Score = 36.2 bits (82), Expect = 4.2
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 25/99 (25%)
Query: 2 WSNRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRI 61
W R+EK + + K+K+ + KE LE + + E++RK E++E E+
Sbjct: 79 WLLREEKAQEEFRAKKKKEEEARKRKEELERKLKAEWEEQQRK----EREEEEQ------ 128
Query: 62 AFEEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELE 100
K+Q++R+ EE Q++ L+Q E+ELE
Sbjct: 129 -----------KRQEKREREEAVQKM----LDQAENELE 152
>ref|NP_035793.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1,
related sequence 1 [Mus musculus]
gi|56207165|emb|CAI24698.1| U2 small nuclear
ribonucleoprotein auxiliary factor (U2AF) 1, related
sequence 1 [Mus musculus] gi|544778|gb|AAB29564.1|
SP2=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit homolog [mice, brain, Peptide, 428 aa]
gi|22255349|dbj|BAC07536.1| U2 small nuclear
ribonucleoprotein auxiliary factor (U2AF) related
protein [Mus musculus] gi|575893|dbj|BAA04230.1| SP2
[Mus musculus] gi|12044258|gb|AAG47771.1| U2AF small
subunit-related protein [Mus musculus]
gi|2842676|sp|Q64707|U2AFL_MOUSE U2 small nuclear
ribonucleoprotein auxiliary factor 35 kDa subunit
related-protein 1 (U2(RNU2) small nuclear RNA auxillary
factor 1-like 1) (SP2) gi|1468962|dbj|BAA05486.1| U2AF
small subunit-related protein [Mus musculus]
Length = 428
Score = 163 bits (413), Expect = 2e-38
Identities = 131/488 (26%), Positives = 221/488 (44%), Gaps = 99/488 (20%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAER---IERDR 60
+RK+ + A+KK KRK+RR+++A LE P EE + ++ AER IER R
Sbjct: 13 SRKQYKAAMKKEKRKKRRQKMARLRALEA------PPEEDDDVSANEELAERLLEIERQR 66
Query: 61 IAFEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEI 117
+ E W++++++ ++ +++++++ +++ E+ E +++ E EE
Sbjct: 67 LHEE-----WLLREEKAQEEFRIKKKKEEAARKQKEEQERQIKAEWEEQ----------- 110
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNV 177
QKK Q+ E + ++ ++ +
Sbjct: 111 ---------QKKQ--------------REEEEQKLQEKREREEAVQKMLDQAENERIWQN 147
Query: 178 AQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA---- 233
+ P + E + CPF+ KT ACRFG+RCSR H +P S TLL+K+M+ G+
Sbjct: 148 PEPPKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRR 207
Query: 234 --WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVC 291
++ D LE + + Q+ D + ++ G+++ FKV
Sbjct: 208 DDYDSDANLE---------------YSEEETYQQFLDFYHDVLPEFKNV--GKVIQFKVS 250
Query: 292 KNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSG 351
N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWKVAICG +
Sbjct: 251 CNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLF---E 307
Query: 352 YKTCSHGTACNFIHCFRNPGGDYEWADSD-KPPPKFWVKEMVALFGHSDNCEMSRVHGNF 410
+ C G CNF+H FRNP ++ A+ D P W +SD E H +
Sbjct: 308 MQKCPKGKHCNFLHVFRNPNNEFREANRDIYMSPPAWTGSSGK---NSDRRERKDHHEEY 364
Query: 411 SALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKD---NHKRKYR 467
+ S + G + SS+R +E ERK W ++K +H+R
Sbjct: 365 YSKSRSYH---------SGSYH---SSKRNRESERKS---PHRWKKSHKQTTKSHERHSS 409
Query: 468 NKTSDSDS 475
+ + DS
Sbjct: 410 RRGREEDS 417
>dbj|BAC27017.1| unnamed protein product [Mus musculus]
Length = 428
Score = 163 bits (412), Expect = 2e-38
Identities = 131/488 (26%), Positives = 221/488 (44%), Gaps = 99/488 (20%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAER---IERDR 60
+RK+ + A+KK KRK+RR+++A LE P EE + ++ AER IER R
Sbjct: 13 SRKQYKAAMKKEKRKKRRQKMARLRALEA------PPEEDDDVSANEELAERLLEIERQR 66
Query: 61 IAFEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEI 117
+ E W++++++ ++ +++++++ +++ E+ E +++ E EE
Sbjct: 67 LHEE-----WLLREEKAQEEFRIKKKKEEAARKQKEEQERQIKAEWEEQ----------- 110
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNV 177
QKK Q+ E + ++ ++ +
Sbjct: 111 ---------QKKQ--------------REEEEQKLQEKREREEAVXKMLDQAENERIWQN 147
Query: 178 AQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA---- 233
+ P + E + CPF+ KT ACRFG+RCSR H +P S TLL+K+M+ G+
Sbjct: 148 PEPPKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRR 207
Query: 234 --WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVC 291
++ D LE + + Q+ D + ++ G+++ FKV
Sbjct: 208 DDYDSDANLE---------------YSEEETYQQFLDFYHDVLPEFKNV--GKVIQFKVS 250
Query: 292 KNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSG 351
N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWKVAICG +
Sbjct: 251 CNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLF---E 307
Query: 352 YKTCSHGTACNFIHCFRNPGGDYEWADSD-KPPPKFWVKEMVALFGHSDNCEMSRVHGNF 410
+ C G CNF+H FRNP ++ A+ D P W +SD E H +
Sbjct: 308 MQKCPKGKHCNFLHVFRNPNNEFREANRDIYMSPPAWTGSSGK---NSDRRERKDHHEEY 364
Query: 411 SALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKD---NHKRKYR 467
+ S + G + SS+R +E ERK W ++K +H+R
Sbjct: 365 YSKSRSYH---------SGSYH---SSKRNRESERKS---PHRWKKSHKQTTKSHERHSS 409
Query: 468 NKTSDSDS 475
+ + DS
Sbjct: 410 RRGREEDS 417
>gb|AAB30301.1| human U2af35 homolog [Mus musculus]
Length = 428
Score = 162 bits (411), Expect = 3e-38
Identities = 128/488 (26%), Positives = 218/488 (44%), Gaps = 99/488 (20%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAER---IERDR 60
+RK+ + A+KK KRK+RR+++A LE P EE + ++ AER IER R
Sbjct: 13 SRKQYKAAMKKEKRKKRRQKMARLRALEA------PPEEDDDVSANEELAERLLEIERQR 66
Query: 61 IAFEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRPEI 117
+ E W++++++ ++ +++++++ +++ E+ E +++ E EE
Sbjct: 67 LHEE-----WLLREEKAQEEFRIKKKKEEAARKQKEEQERQIKAEWEEQ----------- 110
Query: 118 IWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLHNV 177
QKK Q+ E + ++ ++ +
Sbjct: 111 ---------QKKQ--------------REEEEQKLQEKREREEAVQKMLDQAENERIWQN 147
Query: 178 AQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLA---- 233
+ P + E + CPF+ KT ACRFG+RCSR H +P S TLL+K+M+ G+
Sbjct: 148 PEPPKDLRLEKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRR 207
Query: 234 --WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVC 291
++ D LE + + Q+ D + ++ G+++ FKV
Sbjct: 208 DDYDSDANLE---------------YSEEETYQQFLDFYHDVLPEFKNV--GKVIQFKVS 250
Query: 292 KNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSG 351
N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWKVAICG +
Sbjct: 251 CNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKVAICGLF---E 307
Query: 352 YKTCSHGTACNFIHCFRNPGGDYEWADSD-KPPPKFWVKEMVALFGHSDNCEMSRVHGNF 410
+ C G CNF+H FRNP ++ A+ D P W + + + +
Sbjct: 308 MQKCPKGKHCNFLHVFRNPNNEFREANRDIYMSPPAWTGSSGKSSDRRERKDHHEEYYSK 367
Query: 411 SALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKD---NHKRKYR 467
S HS + SS+R +E ERK W ++K +H+R
Sbjct: 368 SRSYHSGSY---------------HSSKRNRESERKS---PHRWKKSHKQTTKSHERHSS 409
Query: 468 NKTSDSDS 475
+ + DS
Sbjct: 410 RRGREEDS 417
>ref|XP_392139.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 2 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 2) [Apis mellifera]
Length = 453
Score = 144 bits (363), Expect = 1e-32
Identities = 139/507 (27%), Positives = 218/507 (42%), Gaps = 86/507 (16%)
Query: 4 NRKEKRKALKKLKRKE-RRKEIAEKERLEEEARLNDPEEERKRILLEQ---QEAERIERD 59
+ KE RK K+ R+ RRK AE+E EE+ R + LEQ +E E+ R+
Sbjct: 10 SHKEWRKIAKREHRRRLRRKAAAEREANEEQLRAALVKSAEYLKWLEQCEIEEREKEARE 69
Query: 60 RIAFEEREKAWIIK----QQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGRP 115
+ ++REK W+ + Q++ + L+E++Q+ LEQ E+++ +E E
Sbjct: 70 KEEHDQREKQWLEEEVKAQEEWKILQEKKQKARLLQLEQ-EAKIRQEFE----------- 117
Query: 116 EIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPESPSQPLH 175
+ I+KK ++ + D+ + PE+ L
Sbjct: 118 -----AKQEAIRKKQEE-----EKRRREEEIRQREQLLKEIDDYIDNGIKTPEA----LR 163
Query: 176 NVAQQPPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGL--- 232
V P G EL CPF KT ACR+GD CSR H S +L+ + Y L
Sbjct: 164 EVIDSQP--GKEL----CPFFTKTGACRYGDTCSRNHRRVCLSKVILVPSFYTHFSLEKN 217
Query: 233 --AWEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKV 290
++ D LE S +T + D + FG I K
Sbjct: 218 CAEYDTDIALEFESS-----------ETRQHFREFYKDVVPEL------ESFGRIKTLKY 260
Query: 291 CKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKS 350
C N HLRGN+YV+Y A A + GR++AG+Q++C+FVNL W+ A+C
Sbjct: 261 CCNTEVHLRGNLYVEYYTEREAARALRRLKGRWYAGRQLNCEFVNLKSWRSAVC------ 314
Query: 351 GYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNF 410
G C G ACNF+H F+NP +Y+ K PP+ W K++ + V N
Sbjct: 315 GMSKCPKGRACNFLHTFKNPHDEYD----IKSPPR-WAKQL--------SSSSQDVTSNK 361
Query: 411 SALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKT 470
+ + E SD E G+ + S + + R + +++ +D+ ++ R+K
Sbjct: 362 KIEHRNKSKWEDGSDVENGKNWRWSESPEPEIEHRSKTIEKRHHHSDERDSRQKSTRDKY 421
Query: 471 SDSDSDK-EGLEEVDRKKYHEHTRKSS 496
SD D+ +E+ RK H R SS
Sbjct: 422 EQSDKDRVSDDDEIPRK----HRRSSS 444
>ref|XP_520951.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein auxiliary
factor 35 kDa subunit related-protein 2 (U2(RNU2) small
nuclear RNA auxillary factor 1-like 2) [Pan troglodytes]
Length = 489
Score = 137 bits (344), Expect = 2e-30
Identities = 134/527 (25%), Positives = 238/527 (44%), Gaps = 88/527 (16%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQ--EAERIERDRI 61
+ K+ R ALKK KRK+RR+E+A RL + L+ EEE + EQQ E + +ER+R
Sbjct: 14 SHKKYRAALKKEKRKKRRQELA---RLRDSG-LSQKEEEEDTFIEEQQLEEEKLLERERQ 69
Query: 62 AFEEREKAWIIKQQQQRD---LEEEQQQLSQRDLEQHESELEEEEEE----DVDDDDDGR 114
E W++++Q+ ++ +++E+++ +++ E+ E +L+E+ EE + ++++ +
Sbjct: 70 RLHEE---WLLREQKAQEEFRIKKEKEEAAKKRQEEQERKLKEQWEEQQRKEREEEEQKQ 126
Query: 115 PEIIWLGNEIIIQKKNPNPLLLLHNHNHHHHHHHHQEQHEHHDNRPTSNPFPPE-SPSQP 173
E KK L Q+ + +N P+ P
Sbjct: 127 QE-----------KKEKEEAL--------------QKMLDQAENEVFLKPYIDNLRPINV 161
Query: 174 LHNVAQQPPNFGTELD--KAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPG 231
+ Q +++ + ++ + F RCSR H +P S TLLIK+M+ G
Sbjct: 162 SLEIIVQEKEGSKKVNSYEGFLKYYSVNLSFSFIRRCSRKHNFPTSSPTLLIKSMFTTFG 221
Query: 232 LA------WEQDEGLE*LSGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEI 285
+ ++ D LE + + Q+ D + ++ G++
Sbjct: 222 MEQCRRDDYDPDASLE---------------YSEEETYQQFLDFYEDVLPEFKNV--GKV 264
Query: 286 VNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICG 345
+ FKV N HLRGNVYVQY+ + A + NGR++AG+Q+ C+F +TRWK+AICG
Sbjct: 265 IQFKVSCNLEPHLRGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEFCPVTRWKMAICG 324
Query: 346 EYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSD--KPPPKFWVKEMVALFG-HSDNCE 402
+ + C G CNF+H FRNP ++ A+ D P + + FG +S+ E
Sbjct: 325 LF---EIQQCPRGKHCNFLHVFRNPNNEFWEANRDIYLSPDR-----TGSSFGKNSERRE 376
Query: 403 MSRVHGN-FSALKHSSNILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDN 461
H + +S L+ N S + G+ RSS R ++ ++ + ++
Sbjct: 377 RMGHHDDYYSRLRGRRNPSPDHSYKRNGESERKRSSHRGKKSHKR--------TSKSRER 428
Query: 462 HKRKYRNKTSDSDSDK-EGLEEVDRKKYHEHTRKSSFNWNKDDNSRR 507
H + R + D D+ G R + +R S + ++ RR
Sbjct: 429 HNSRSRGRNRDRSRDRSRGRGSRSRSRRSRRSRSQSSSRSRSRGRRR 475
Score = 35.4 bits (80), Expect = 7.1
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 16/133 (12%)
Query: 574 RDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGS 633
R S+ SE + GH + D R N S RN + + S +R ++
Sbjct: 363 RTGSSFGKNSERRERMGHHD--DYYSRLRGRRNPSPDHSYKRNGESERKRSSHRGKKSHK 420
Query: 634 DEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDS 693
+ R+RH+S R +R RSRD S + RG S SR + Q S
Sbjct: 421 RTSKSRERHNSRSRGRNRDRSRDRS---------RGRGSRSRS-----RRSRRSRSQSSS 466
Query: 694 KGKNSQKRNGDSK 706
+ ++ +R ++
Sbjct: 467 RSRSRGRRRSGNR 479
>ref|XP_639991.1| hypothetical protein DDB0218665 [Dictyostelium discoideum]
gi|60466958|gb|EAL65002.1| hypothetical protein
DDB0218665 [Dictyostelium discoideum]
Length = 471
Score = 112 bits (281), Expect = 4e-23
Identities = 88/313 (28%), Positives = 140/313 (44%), Gaps = 42/313 (13%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE D+ +CPF+LK ACR GDRCSR+H P S T+L+ N+Y P + +E
Sbjct: 9 FGTEKDQQNCPFYLKIGACRHGDRCSRLHNKPVLSQTILLPNLYQSP----ISKKAIEAA 64
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
G +P ++ + Q + + + + K+G++ VC N HL GNVY
Sbjct: 65 GGQAPNLSDAELQQHFDEFYEDIYEGLA---------KYGQVDLLNVCANLGDHLVGNVY 115
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+Y+ D A + + GR++ G+ + +F +T + A C +Y TC+ G CNF
Sbjct: 116 VKYQKEDDANESIKGLKGRFYDGRPIISEFSPVTDFTEARCRQY---DIGTCNRGGFCNF 172
Query: 364 IHCFRNPGGDYEW-----ADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSALKHSSN 418
+H NP + S P PK D + R +G
Sbjct: 173 MH-LHNPSKSLYYKLFGDRKSRSPSPK------------RDYRDRDRDYGR-RGYDRDYR 218
Query: 419 ILETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHK-RKYRNKTSDSDSDK 477
+ D DR+ G+ GG R ++ +R ++ +Y+D + R ++ D D D+
Sbjct: 219 DRDRDRDRDYGRRGGGGYDRDYRDRDRDYGGGGGRYDRDYRDRDRDRDGYGRSRDYDRDR 278
Query: 478 EGLEEVDRKKYHE 490
DR+ Y E
Sbjct: 279 ------DRRPYDE 285
Score = 39.7 bits (91), Expect = 0.38
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 572 QSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEA 631
+SR S D + D+D G Y D D+ R+ ++ +G G ++RD R R +
Sbjct: 191 KSRSPSPKRDYRDRDRDYGRRGY-DRDYRDRDRDRDRDYGRRGGGG--YDRDYRDRDRDY 247
Query: 632 GSDEDRHRKRHHSSQRKGSRHRSRDNSNVADESESDKDRGHEKYSDVDWDTMSRDNEKQH 691
G R+ + + R R RD + D+DR Y + S+ E
Sbjct: 248 GGGGGRYDRDY--------RDRDRDRDGYGRSRDYDRDRDRRPYDEFRGSRGSKSPEYSR 299
Query: 692 DSKG 695
+S G
Sbjct: 300 NSGG 303
>emb|CAF29556.1| U2 snRNP auxiliary factor small subunit [Homo sapiens]
Length = 240
Score = 103 bits (256), Expect = 3e-20
Identities = 63/182 (34%), Positives = 91/182 (49%), Gaps = 17/182 (9%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE DK +C F+ K ACR GDRCSR+H P S T+LI+N+Y P
Sbjct: 9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTILIQNIYRNP------------- 55
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
+S A G+ + +Q D + T M K+GE+ VC N HL GNVY
Sbjct: 56 -QNSAQTADGSHCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 114
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+++ + A A +N R+F G+ + + +T ++ A C +Y C+ G CNF
Sbjct: 115 VKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMG---ECTRGGFCNF 171
Query: 364 IH 365
+H
Sbjct: 172 MH 173
>gb|AAM34646.1| U2 small nuclear RNA auxiliary factor small subunit [Danio rerio]
gi|29126228|ref|NP_803432.1| U2(RNU2) small nuclear RNA
auxiliary factor 1 [Danio rerio]
Length = 249
Score = 101 bits (252), Expect = 8e-20
Identities = 61/182 (33%), Positives = 90/182 (48%), Gaps = 18/182 (9%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE DK +C F+ K ACR GDRCSR+H P S T+ + N+Y P + +GL +
Sbjct: 9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNTAQSADGLNAV 68
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
S M + + V T M K+GE+ VC N HL GNVY
Sbjct: 69 SDVE-------MQEHYDEFFEEV--------FTEMEEKYGEVEEMNVCDNLGDHLVGNVY 113
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+++ + A A ++N R+F G+ + + +T ++ A C +Y C+ G CNF
Sbjct: 114 VKFRREEDAEKAVINLNNRWFNGQPIHAELSPVTDFREACCRQYEMG---ECTRGGFCNF 170
Query: 364 IH 365
+H
Sbjct: 171 MH 172
>emb|CAF96846.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2196
Score = 101 bits (252), Expect = 8e-20
Identities = 88/351 (25%), Positives = 141/351 (40%), Gaps = 39/351 (11%)
Query: 423 DSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGLEE 482
D DR + R R D K++ D++ + KD + + + K D D +KE +
Sbjct: 1857 DRDRSRDRDADRSRERERDRDRSKEKDRDQD-RSKEKDRDQDRNKEKDRDQDRNKEKDRD 1915
Query: 483 VDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDR-KGRNSQKSNRDS 541
DR K + R + ++D N + + RD K DR + R ++S
Sbjct: 1916 QDRNKEKDRDRSKEKDRDQDRNKEKDRD----------RDRSKEKDRERSRERERSRGKE 1965
Query: 542 RDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWDT 601
+ E + RD DG K RR R + RD + +D E D+DR + +
Sbjct: 1966 GERQRETEGERHRDQDGEK----RRDRDRERDRDRTKDSDRREHDRDRRNRD-------- 2013
Query: 602 MSRENEKQHGSNGRNSQKWNRD-SRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNV 660
RE E++ S+ +RD R R + G D R R R R R R +D
Sbjct: 2014 --RERERERDKRRDRSRSRDRDRDRDRDRDRGKDRGRDRDRDRDRDRDRDRERDKDR--- 2068
Query: 661 ADESESDKDRGHEKYSDVDWD-TMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDRH 719
+ D+D+ EK D D + RD EK D K ++ +K K + + D+DR
Sbjct: 2069 ----DRDRDKDREKDKDRDREKDKDRDREKDKD-KDRDREKDKDREKDKDRDREKDKDRD 2123
Query: 720 RKKHLSSQMKESRHQSSDSGYGID---ESDKDKGEMEAQHGYSRKSSRHKR 767
R+K + R + D D E DKD+ + G ++ + +
Sbjct: 2124 REKDKDRDKDKDREKDKDRDKDKDRDREKDKDRDRRDGSRGKDKREEKRDK 2174
Score = 95.9 bits (237), Expect = 4e-18
Identities = 84/321 (26%), Positives = 134/321 (41%), Gaps = 26/321 (8%)
Query: 421 ETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGL 480
+ D DR + R R +E +R Q E+ K+ + + RNK D D D+
Sbjct: 1893 DRDQDRNKEK---DRDQDRNKEKDRDQDRNKEKDRDRSKEKDRDQDRNKEKDRDRDRSKE 1949
Query: 481 EEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDR-KGRNSQKSNR 539
++ +R + E +R ++ RH + R +RD E+ DR K + ++ +R
Sbjct: 1950 KDRERSRERERSRGKEGERQRETEGERHRDQDGEKR--RDRDRERDRDRTKDSDRREHDR 2007
Query: 540 DSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDW 599
D R +RD + + RR SR + RD D + KDRG + D D
Sbjct: 2008 DRR----------NRDRERERERDKRRDRSRSRDRDRDRDRDR-DRGKDRGRDRDRDRDR 2056
Query: 600 D-TMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNS 658
D RE +K R+ K + R E D DR + + R+ + R +D
Sbjct: 2057 DRDRDRERDK---DRDRDRDKDREKDKDRDREKDKDRDREKDKDKDRDREKDKDREKDKD 2113
Query: 659 NVADESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDE-D 717
+ E DKDR EK D D D R+ +K D ++++ D + G D+ +
Sbjct: 2114 R---DREKDKDRDREKDKDRDKD-KDREKDKDRDKDKDRDREKDKDRDRRDGSRGKDKRE 2169
Query: 718 RHRKKHLSSQMKESRHQSSDS 738
R KH SS+ E +S+ S
Sbjct: 2170 EKRDKHSSSKESEKTAESAKS 2190
Score = 90.5 bits (223), Expect = 2e-16
Identities = 70/299 (23%), Positives = 131/299 (43%), Gaps = 16/299 (5%)
Query: 421 ETDSDREMGQLYGGRSSRRRQEDERKQRTLDEEWNTNYKDNHKRKYRNKTSDSDSDKEGL 480
+ D DR + + R +D K++ D + + KD + + R ++ + +++
Sbjct: 1913 DRDQDRNKEKDRDRSKEKDRDQDRNKEKDRDRD-RSKEKDRERSRERERSRGKEGERQRE 1971
Query: 481 EEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPHDRKGRNSQKSNRD 540
E +R + + ++ + +D + + + + DR NRD E+ +R R + +RD
Sbjct: 1972 TEGERHRDQDGEKRRDRDRERDRDRTKDSDRREHDRDRRNRDRERERERDKRRDRSRSRD 2031
Query: 541 SRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVTDESESDKDRGHEEYSDVDWD 600
RD D DRD D K R R + RD + E DKDR + D + D
Sbjct: 2032 -RD------RDRDRDRDRGKDRGRDRDRDRDRDRDR-----DRERDKDRDRDRDKDREKD 2079
Query: 601 TMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRKRHHSSQRKGSRHRSRDNSNV 660
R+ EK + + +RD R + + D+DR R++ R+ + R +D
Sbjct: 2080 -KDRDREKDKDRDREKDKDKDRD-REKDKDREKDKDRDREKDKDRDREKDKDRDKDKDRE 2137
Query: 661 AD-ESESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKNSQKRNGDSKYQIDEAGSDEDR 718
D + + DKDR EK D D SR +K+ + + K+S + + + ++ S ++
Sbjct: 2138 KDKDRDKDKDRDREKDKDRDRRDGSRGKDKREEKRDKHSSSKESEKTAESAKSVSSSEK 2196
Score = 70.5 bits (171), Expect = 2e-10
Identities = 94/418 (22%), Positives = 152/418 (35%), Gaps = 61/418 (14%)
Query: 362 NFIHCFR-NPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVH----GNFSALKHS 416
N +H F+ N G Y PPP + + G + EMS +H G F + H
Sbjct: 1682 NPLHVFKDNQGPVYRG-----PPPNQYEERR----GRGPSGEMSALHFNPHGQFGSRPHP 1732
Query: 417 SNILETDSDREMGQLYGGR---------SSRRRQEDERKQRTLDEEWNTNYKDNHKRKYR 467
S S+ + G R Q +R++ D+ W + +R
Sbjct: 1733 SPPHRGLSEDARPVRHSGALLPTPPEVLGPARAQSPDRQR---DDHWRRRSPEIRRR--- 1786
Query: 468 NKTSDSDSDKEGLEEVDRKKYHEHTRKSSFNWNKDDNSRRHEEYSDVDRVTINRDNEKPH 527
T+ D++ G + R + H S +++ R E D R R+ E PH
Sbjct: 1787 GSTNREDTELHGGDRFARFESHREAASGSVQPSEE---RTREASEDRRR---EREREAPH 1840
Query: 528 ------DR-KGRNSQKSNRDSRDWIYEAGCDEDRDGDGRKHHISRRKGSRHQSRDNSNVT 580
DR +G+ + SRD + + +RD D K + S+ + RD
Sbjct: 1841 GGRALWDRGQGKRWSRDRDRSRDRDADRSRERERDRDRSKEKDRDQDRSKEKDRDQDR-- 1898
Query: 581 DESESDKDRGHEEYSDVDWDTMSRENEKQHGSNGRNSQKWNRDSRYRIYEAGSDEDRHRK 640
E D+D+ + D D D ++ + R+ + R R D +R R+
Sbjct: 1899 -NKEKDRDQDRNKEKDRDQDRNKEKDRDRSKEKDRDQDRNKEKDRDRDRSKEKDRERSRE 1957
Query: 641 RHHSSQRKGSRHRSRDNSNVADES-ESDKDRGHEKYSDVDWDTMSRDNEKQHDSKGKN-- 697
R S ++G R R + D+ E +DR E+ D D + ++HD +N
Sbjct: 1958 RERSRGKEGERQRETEGERHRDQDGEKRRDRDRER----DRDRTKDSDRREHDRDRRNRD 2013
Query: 698 ------SQKRNGDSKYQIDEAGSDEDRHRKKHLSSQMKESRHQSSDSGYGIDESDKDK 749
KR S+ + + D DR R K R + D E DKD+
Sbjct: 2014 RERERERDKRRDRSRSRDRDRDRDRDRDRGKDRGRDRDRDRDRDRDRD---RERDKDR 2068
Score = 37.7 bits (86), Expect = 1.4
Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAF 63
N+++ R K+ R + R + EK+R + ++ D E R+R E+ + ER R
Sbjct: 1919 NKEKDRDRSKEKDRDQDRNK--EKDRDRDRSKEKDRERSRER---ERSRGKEGERQRETE 1973
Query: 64 EEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGR 114
ER + ++++ RD E ++ + D +H+ + + E + D R
Sbjct: 1974 GERHRDQDGEKRRDRDRERDRDRTKDSDRREHDRDRRNRDRERERERDKRR 2024
Score = 37.4 bits (85), Expect = 1.9
Identities = 25/110 (22%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 4 NRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERI-ERDRIA 62
+R+ +R+ K+ R R +++R + + + +R R ++ ER +RDR
Sbjct: 2013 DRERERERDKRRDRSRSRDRDRDRDRDRDRGKDRGRDRDRDRDRDRDRDRERDKDRDRDR 2072
Query: 63 FEEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDD 112
++REK +++ +D + E+ + RD E+ + + E++++ D + D D
Sbjct: 2073 DKDREKDKDRDREKDKDRDREKDKDKDRDREK-DKDREKDKDRDREKDKD 2121
Score = 37.0 bits (84), Expect = 2.5
Identities = 29/111 (26%), Positives = 56/111 (50%), Gaps = 11/111 (9%)
Query: 6 KEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFEE 65
KEK + + K K+R +++R +E+ R D +E+ R +Q + +RDR ++
Sbjct: 1880 KEKDRDQDRSKEKDR-----DQDRNKEKDRDQDRNKEKDR---DQDRNKEKDRDRSKEKD 1931
Query: 66 REKAWIIKQQQQRDLEEEQQQLSQRDLEQ---HESELEEEEEEDVDDDDDG 113
R++ ++ + RD +E+ + R+ E+ E E + E E + D DG
Sbjct: 1932 RDQDRNKEKDRDRDRSKEKDRERSRERERSRGKEGERQRETEGERHRDQDG 1982
Score = 36.6 bits (83), Expect = 3.2
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 6 KEKRKALKKLKRKER-RKEIAEKERLEEEARLNDPEEERKRILLEQQEAERI-ERDRIAF 63
KEK + + K K+R R E+ R +E R + E ER R ++ +R ERDR
Sbjct: 1938 KEKDRDRDRSKEKDRERSRERERSRGKEGERQRETEGERHRDQDGEKRRDRDRERDRDRT 1997
Query: 64 EEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDDGR 114
++ ++ + ++ RD E E+++ +RD + + + + D GR
Sbjct: 1998 KDSDRREHDRDRRNRDRERERERDKRRDRSRSRDRDRDRDRDRDRGKDRGR 2048
Score = 35.8 bits (81), Expect = 5.5
Identities = 28/109 (25%), Positives = 59/109 (53%), Gaps = 6/109 (5%)
Query: 6 KEKRKALKKLKRKER---RKEIAEKERLEEEARLND--PEEERKRILLEQQEAERI-ERD 59
KEK + + K K+R R + +++R +E+ R D E++R R ++++ ER ER+
Sbjct: 1900 KEKDRDQDRNKEKDRDQDRNKEKDRDRSKEKDRDQDRNKEKDRDRDRSKEKDRERSRERE 1959
Query: 60 RIAFEEREKAWIIKQQQQRDLEEEQQQLSQRDLEQHESELEEEEEEDVD 108
R +E E+ + ++ RD + E+++ R+ ++ ++ + E D D
Sbjct: 1960 RSRGKEGERQRETEGERHRDQDGEKRRDRDRERDRDRTKDSDRREHDRD 2008
Score = 35.4 bits (80), Expect = 7.1
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 31/190 (16%)
Query: 603 SRENEKQHGSNGRNSQKWNRDSRYRIYEAGS---DEDRHRKRHHSSQRKGSRHRSRDNSN 659
+RE+ + HG + ++ R +R +GS E+R R+ +R+ R
Sbjct: 1790 NREDTELHGGD-----RFARFESHREAASGSVQPSEERTREASEDRRREREREAPHGGRA 1844
Query: 660 VADESES---DKDRGHEKYSDVDWD-----TMSRDNEKQHDSKGKNSQKRNGDSKYQID- 710
+ D + +DR + D D R EK D + R+ D + D
Sbjct: 1845 LWDRGQGKRWSRDRDRSRDRDADRSRERERDRDRSKEKDRDQDRSKEKDRDQDRNKEKDR 1904
Query: 711 ------EAGSDEDRHRKKHLSSQMKESRHQSSDSGYGIDESDKDKG---EMEAQHGYSRK 761
E D+DR+++K ++ R Q + E D+D+ E + + R+
Sbjct: 1905 DQDRNKEKDRDQDRNKEKDRDRSKEKDRDQDRNK-----EKDRDRDRSKEKDRERSRERE 1959
Query: 762 SSRHKRSGLQ 771
SR K Q
Sbjct: 1960 RSRGKEGERQ 1969
Score = 35.4 bits (80), Expect = 7.1
Identities = 22/96 (22%), Positives = 52/96 (53%), Gaps = 2/96 (2%)
Query: 17 RKERRKEIAEKERLEEEARLNDPEEERKRILLEQQEAERIERDRIAFEEREKAWIIKQQQ 76
R R E+++ + R D E+++ R + ++ +R E+D+ +REK ++ +
Sbjct: 2054 RDRDRDRDRERDKDRDRDRDKDREKDKDRDREKDKDRDR-EKDKDKDRDREKDKDREKDK 2112
Query: 77 QRDLEEEQQQLSQRDLEQHESELEEEEEEDVDDDDD 112
RD E+++ + ++D + + + + E+++D D D D
Sbjct: 2113 DRDREKDKDRDREKD-KDRDKDKDREKDKDRDKDKD 2147
>gb|AAH01923.1| U2 small nuclear RNA auxillary factor 1 [Homo sapiens]
gi|12654677|gb|AAH01177.1| U2 small nuclear RNA
auxillary factor 1 [Homo sapiens]
gi|7768747|dbj|BAA95534.1| U2 snRNP auxiliary factor
small subunit [Homo sapiens]
gi|267187|sp|Q01081|U2AF1_HUMAN Splicing factor U2AF 35
kDa subunit (U2 auxiliary factor 35 kDa subunit) (U2
snRNP auxiliary factor small subunit)
gi|5803207|ref|NP_006749.1| U2 small nuclear RNA
auxillary factor 1 [Homo sapiens]
gi|338263|gb|AAA36619.1| U2 snRNP auxiliary factor small
subunit
Length = 240
Score = 100 bits (248), Expect = 2e-19
Identities = 60/182 (32%), Positives = 89/182 (47%), Gaps = 17/182 (9%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE DK +C F+ K ACR GDRCSR+H P S T+ + N+Y P + + +GL
Sbjct: 9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLR-- 66
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
+ +Q D + T M K+GE+ VC N HL GNVY
Sbjct: 67 ------------CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 114
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+++ + A A +N R+F G+ + + +T ++ A C +Y C+ G CNF
Sbjct: 115 VKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMG---ECTRGGFCNF 171
Query: 364 IH 365
+H
Sbjct: 172 MH 173
>ref|NP_077149.1| U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 [Mus
musculus] gi|12842455|dbj|BAB25609.1| unnamed protein
product [Mus musculus]
Length = 239
Score = 100 bits (248), Expect = 2e-19
Identities = 60/182 (32%), Positives = 89/182 (47%), Gaps = 17/182 (9%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE DK +C F+ K ACR GDRCSR+H P S T+ + N+Y P + + +GL
Sbjct: 9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLR-- 66
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
+ +Q D + T M K+GE+ VC N HL GNVY
Sbjct: 67 ------------CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 114
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+++ + A A +N R+F G+ + + +T ++ A C +Y C+ G CNF
Sbjct: 115 VKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMG---ECTRGGFCNF 171
Query: 364 IH 365
+H
Sbjct: 172 MH 173
>ref|XP_514926.1| PREDICTED: similar to cystathionine beta-synthase minor isoform
[Pan troglodytes]
Length = 1548
Score = 100 bits (248), Expect = 2e-19
Identities = 60/182 (32%), Positives = 89/182 (47%), Gaps = 17/182 (9%)
Query: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE*L 243
FGTE DK +C F+ K ACR GDRCSR+H P S T+ + N+Y P + + +GL
Sbjct: 9 FGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLR-- 66
Query: 244 SGSSPIMA*GAMMQTNGRSLQRV*DCGSKA*KTWMHLKFGEIVNFKVCKNGSFHLRGNVY 303
+ +Q D + T M K+GE+ VC N HL GNVY
Sbjct: 67 ------------CAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVY 114
Query: 304 VQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNF 363
V+++ + A A +N R+F G+ + + +T ++ A C +Y C+ G CNF
Sbjct: 115 VKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTDFREACCRQYEMG---ECTRGGFCNF 171
Query: 364 IH 365
+H
Sbjct: 172 MH 173
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.131 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,502,904,626
Number of Sequences: 2540612
Number of extensions: 74270693
Number of successful extensions: 986904
Number of sequences better than 10.0: 17753
Number of HSP's better than 10.0 without gapping: 6014
Number of HSP's successfully gapped in prelim test: 12507
Number of HSP's that attempted gapping in prelim test: 563601
Number of HSP's gapped (non-prelim): 175226
length of query: 771
length of database: 863,360,394
effective HSP length: 136
effective length of query: 635
effective length of database: 517,837,162
effective search space: 328826597870
effective search space used: 328826597870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 79 (35.0 bits)
Medicago: description of AC140549.14