BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.12 - phase: 0
(504 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like... 174 6e-42
emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana] gi|7... 172 2e-41
gb|AAD37019.2| putative non-LTR retrolelement reverse transcript... 169 2e-40
pir||E84487 hypothetical protein At2g07670 [imported] - Arabidop... 169 2e-40
gb|AAF18653.1| hypothetical protein [Arabidopsis thaliana] gi|15... 167 9e-40
gb|AAC26675.1| putative Ta11-like non-LTR retroelement protein [... 153 1e-35
ref|NP_680626.1| hypothetical protein [Arabidopsis thaliana] 133 1e-29
emb|CAB78007.1| putative protein [Arabidopsis thaliana] gi|73210... 105 3e-21
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 89 4e-16
ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thal... 84 1e-14
gb|AAQ65142.1| At5g10850 [Arabidopsis thaliana] gi|8979719|emb|C... 70 2e-10
gb|AAF79677.1| F9C16.26 [Arabidopsis thaliana] 62 3e-08
emb|CAE02522.2| OSJNBb0003A12.9 [Oryza sativa (japonica cultivar... 61 7e-08
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 61 9e-08
emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar... 60 1e-07
emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultiva... 60 1e-07
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 60 2e-07
emb|CAB81573.1| putative protein [Arabidopsis thaliana] gi|15229... 59 3e-07
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 58 6e-07
gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cul... 58 6e-07
>dbj|BAB01940.1| non-LTR retrolelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 591
Score = 174 bits (441), Expect = 6e-42
Identities = 88/227 (38%), Positives = 128/227 (55%)
Query: 45 IPIREKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNT 104
IP ++ K V ++ G P I I + + WK + VK+LG+ +
Sbjct: 35 IPEEILDDEFVKSRVTLKFPNGVDGEPVITIGQEVIDAMNGLWKQCMFVKVLGRKVSLAA 94
Query: 105 MKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ RL+++WK G ++D FFMV+F++ + +TGGPW F CL V W+PEF
Sbjct: 95 VSHRLREMWKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEF 154
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
++ T +WVR + + +Y +S L+++A LGRP+KVD L ERG+FARVCVE
Sbjct: 155 NPLKDEIVTTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVE 214
Query: 225 IDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPS 271
+DL P+ G + VNG Y V YEGL IC+ CG YGHL NC ++ S
Sbjct: 215 VDLKRPLQGALLVNGDRYYVAYEGLTNICSKCGIYGHLVHNCPKELS 261
>emb|CAB10338.1| hypothetical protein [Arabidopsis thaliana]
gi|7268308|emb|CAB78602.1| hypothetical protein
[Arabidopsis thaliana] gi|7485201|pir||H71420
hypothetical protein - Arabidopsis thaliana
Length = 655
Score = 172 bits (437), Expect = 2e-41
Identities = 86/224 (38%), Positives = 127/224 (56%), Gaps = 2/224 (0%)
Query: 45 IPIREK--ENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
+P+ E ++ + +R+E +G P I IE + + +K ++VK+LG+
Sbjct: 48 VPVPESVLDDDFVRSRMRLEFPDGVDGEPVITIEKEVLDAMNGLYKQCMLVKILGRHTTI 107
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
+ +L+ +W+ GG ++D FFMV+F+ D +TGGPW + L V W+P
Sbjct: 108 EVLSRKLRDLWRPTGGMSVLDLPRQFFMVRFEVEEDYMMALTGGPWRVLGSILMVQAWSP 167
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
EF ++ T VWVR L + +Y LL +A+ LG+PIKVD TL+ ERG+FARVC
Sbjct: 168 EFNPLRDVIETTPVWVRVANLPVTFYHNEILLGIAAGLGKPIKVDLTTLRKERGRFARVC 227
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
VE++L P+ G + VNG Y V YEGL IC+ CG YGH NC
Sbjct: 228 VEVNLKNPLKGTLVVNGERYFVSYEGLQTICSLCGIYGHTVNNC 271
>gb|AAD37019.2| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 855
Score = 169 bits (427), Expect = 2e-40
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 3/221 (1%)
Query: 59 VRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG 118
+R+E G I I + + + WK +VVK+LG+++ + RL+++WK QG
Sbjct: 24 MRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGA 83
Query: 119 FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWV 178
++D FFM++F++ + +TGGPW F L V W+PEF ++ T +WV
Sbjct: 84 MFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWV 143
Query: 179 RFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVN 238
R + L Y S L+ +A +LG+P+KVD TL VER +FAR+C+E+DL P+ G + +N
Sbjct: 144 RLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLN 203
Query: 239 GHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
G Y V YEGL IC+ CG YGHL C P T + N
Sbjct: 204 GERYFVSYEGLANICSRCGMYGHLIHTC---PQTIAEKEVN 241
>pir||E84487 hypothetical protein At2g07670 [imported] - Arabidopsis thaliana
Length = 913
Score = 169 bits (427), Expect = 2e-40
Identities = 84/221 (38%), Positives = 125/221 (56%), Gaps = 3/221 (1%)
Query: 59 VRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG 118
+R+E G I I + + + WK +VVK+LG+++ + RL+++WK QG
Sbjct: 24 MRVEFPNGADGESVITIGREVLDVMNSMWKQCMVVKVLGRNISIANLNRRLREMWKPQGA 83
Query: 119 FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWV 178
++D FFM++F++ + +TGGPW F L V W+PEF ++ T +WV
Sbjct: 84 MFVVDLPCQFFMIRFEREDEYLSALTGGPWRAFGSYLLVQAWSPEFDPLRDEITTTPIWV 143
Query: 179 RFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVN 238
R + L Y S L+ +A +LG+P+KVD TL VER +FAR+C+E+DL P+ G + +N
Sbjct: 144 RLMNIPLSLYHTSILMGIAGSLGKPVKVDMTTLHVERARFARMCIEVDLAKPLKGTLLLN 203
Query: 239 GHWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
G Y V YEGL IC+ CG YGHL C P T + N
Sbjct: 204 GERYFVSYEGLANICSRCGMYGHLIHTC---PQTIAEKEVN 241
>gb|AAF18653.1| hypothetical protein [Arabidopsis thaliana]
gi|15226168|ref|NP_178215.1| hypothetical protein
[Arabidopsis thaliana] gi|25410873|pir||A84420
hypothetical protein At2g01050 [imported] - Arabidopsis
thaliana
Length = 515
Score = 167 bits (422), Expect = 9e-40
Identities = 84/250 (33%), Positives = 137/250 (54%), Gaps = 11/250 (4%)
Query: 21 PPDTIKQSSQKPSFRDKLLESNQDIPIREKENMIEKKLVR----IELEEGNRLLPKIYIE 76
PPD ++ + K ++ + I + E++I+ + VR +E +G P I I
Sbjct: 14 PPDKLESWATK-------VKGSAGGGILKPEDVIDDEFVRERVGLEFPDGEDEEPVITIG 66
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
+ + + WK ++VK+LG + + + +L+++WK G +MD FFM++F+
Sbjct: 67 EEVLEAMNGLWKKCMIVKVLGSQIPISVLNRKLRELWKPSGVMTVMDLPRQFFMIRFELE 126
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAM 196
+ +TGGPW + + L V W+ F + T VWVR + YY L+ +
Sbjct: 127 EEYMAALTGGPWRVLGNYLLVQDWSSRFDPLRDDIVTTPVWVRLSNIPYNYYHRCLLMEI 186
Query: 197 ASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNC 256
A LGRP+KVD NT+ ++G+FARVC+E++L P+ G + +NG Y V YEGL IC++C
Sbjct: 187 ARGLGRPLKVDMNTINFDKGRFARVCIEVNLAKPLKGTVLINGDRYFVAYEGLSKICSSC 246
Query: 257 GCYGHLGRNC 266
G YGHL +C
Sbjct: 247 GIYGHLVHSC 256
>gb|AAC26675.1| putative Ta11-like non-LTR retroelement protein [Arabidopsis
thaliana] gi|15226160|ref|NP_178817.1| zinc knuckle
(CCHC-type) family protein [Arabidopsis thaliana]
gi|25371846|pir||D84488 probable Ta11-like non-LTR
retroelement protein [imported] - Arabidopsis thaliana
Length = 409
Score = 153 bits (386), Expect = 1e-35
Identities = 77/198 (38%), Positives = 111/198 (55%), Gaps = 7/198 (3%)
Query: 91 LVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLI 150
LVVK+LG+ + + RL+++WK GG +++ FFMVKFD D G PW +
Sbjct: 33 LVVKVLGRHITIADLNRRLRELWKPNGGMSVLNLPRSFFMVKFDLEEDYLAAAIGDPWRV 92
Query: 151 FDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNT 210
L + W+P+F ++ T+VWVR L + YY E+ L A+ LG+PIKV+
Sbjct: 93 LGSILMIRAWSPDFNPIRDEIVTTLVWVRISNLPVNYYHETILTAIVEGLGKPIKVNLTI 152
Query: 211 LKVERGKFARVCVEIDLTVPVVGKIWVNGHWYKVQYEGLHLICTNCGCYGHLGRNCMEKP 270
L+ ER FARVCV+++L P+ G + VNG Y YEGL++IC+ CG +GHL C +
Sbjct: 153 LRKERAHFARVCVKVNLKQPLKGTVVVNGECYYASYEGLNVICSLCGVFGHLAGACPK-- 210
Query: 271 STFDPRSPNHHTAGGNNP 288
RSP G +P
Sbjct: 211 -----RSPGPVVQAGASP 223
>ref|NP_680626.1| hypothetical protein [Arabidopsis thaliana]
Length = 223
Score = 133 bits (335), Expect = 1e-29
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 122 MDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFP 181
MD FFM++F+ + +TG PW +F L V W PEF + T VW+R
Sbjct: 1 MDLPRQFFMIRFELQEEYLAALTGDPWRVFGSNLTVQAWLPEFDPLRDVIATTPVWIRLT 60
Query: 182 GLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGHW 241
+ + +Y S L+++A LG+P KVDT TL ER +FARVCVE++L P+ G I VNG
Sbjct: 61 NVPVNFYHPSILMSIAGGLGKPFKVDTMTLNHERARFARVCVEMNLAKPLKGTIMVNGDR 120
Query: 242 YKVQYEGLHLICTNCGCYGHLGRNC---MEKPSTFDPRS 277
Y V YEGL IC+ CG YGHL C +++ S PR+
Sbjct: 121 YYVAYEGLTNICSTCGLYGHLVHTCPRVVQEQSKEGPRT 159
>emb|CAB78007.1| putative protein [Arabidopsis thaliana] gi|7321071|emb|CAB82118.1|
putative protein [Arabidopsis thaliana]
gi|15236612|ref|NP_192622.1| hypothetical protein
[Arabidopsis thaliana] gi|25371845|pir||G85088
hypothetical protein AT4g08820 [imported] - Arabidopsis
thaliana
Length = 404
Score = 105 bits (262), Expect = 3e-21
Identities = 63/205 (30%), Positives = 96/205 (46%), Gaps = 37/205 (18%)
Query: 47 IREKENMIE----KKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGY 102
I + EN+I+ ++ VR+E G P I I + + + WK ++VK
Sbjct: 13 ILKPENVIDDAFVRERVRLEFPNGEDGEPVITIGEEVLEAMNGLWKRCMIVK-------- 64
Query: 103 NTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTP 162
FFM++F+ + +TGGPW +F + L V W+P
Sbjct: 65 -------------------------FFMIRFELEEEYLAALTGGPWRVFGNYLMVQDWSP 99
Query: 163 EFASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVC 222
F + T VWVR + + YY L +A LG+ +KVD NT+ RG+FARVC
Sbjct: 100 NFDPLRDDIVTTPVWVRLTNIPVNYYHRCLLEEIARGLGKLLKVDLNTITFGRGRFARVC 159
Query: 223 VEIDLTVPVVGKIWVNGHWYKVQYE 247
+E++L P+ G + +NG Y V YE
Sbjct: 160 IEVNLAKPLKGTVLINGDRYFVAYE 184
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 88.6 bits (218), Expect = 4e-16
Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 20 KPPDTIKQSSQKPSFRDKLLESNQD---IPIREKENMIEKKLVRIELEEGNRLLPKIYIE 76
+PPD + S+ DK+ +SN +P R ++ +R+E G P + I+
Sbjct: 22 RPPDGCVPMAAV-SWVDKVQKSNGGGLPVPERVIDDEFIASRMRVEFPNGEDGEPVVTID 80
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
P+ + WK +VVK+LG+ + + +L+++WK +GG ++D FF+V+FD
Sbjct: 81 PEVVDAMNGLWKLCMVVKVLGRHVSIAALSRKLRELWKPRGGMYVLDLPRQFFVVRFDVE 140
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVW 177
D +TGGPW +F L W+PEF ++ +T VW
Sbjct: 141 EDYLAAVTGGPWRLFGSVLMGQAWSPEFNPLKDEISKTPVW 181
>ref|NP_680149.1| reverse transcriptase-related [Arabidopsis thaliana]
Length = 594
Score = 83.6 bits (205), Expect = 1e-14
Identities = 47/158 (29%), Positives = 81/158 (50%), Gaps = 4/158 (2%)
Query: 20 KPPDTIKQSSQKPSFRDKLLESNQD---IPIREKENMIEKKLVRIELEEGNRLLPKIYIE 76
+PPD + S+ DK+ +SN +P R ++ +R+E G P + I+
Sbjct: 22 RPPDGCVPMAAV-SWVDKVQKSNGGGLPVPERVIDDEFIASRMRVEFPNGEDGEPVVTID 80
Query: 77 PQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIMDNDNGFFMVKFDQA 136
P+ + WK +VVK+LG+ + + +L+++WK +GG ++D FF+V+FD
Sbjct: 81 PEVVDAMNGLWKLCMVVKVLGRHVSIAALSRKLRELWKPRGGMYVLDLPRQFFVVRFDVE 140
Query: 137 ADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRT 174
D +TGGPW +F L W+PEF ++ +T
Sbjct: 141 EDYLAAVTGGPWRLFGSVLMGQAWSPEFNPLKDEISKT 178
>gb|AAQ65142.1| At5g10850 [Arabidopsis thaliana] gi|8979719|emb|CAB96840.1|
putative protein [Arabidopsis thaliana]
gi|15238283|ref|NP_196646.1| expressed protein
[Arabidopsis thaliana] gi|51970522|dbj|BAD43953.1|
putative protein [Arabidopsis thaliana]
gi|11358289|pir||T50794 hypothetical protein T30N20_120
- Arabidopsis thaliana
Length = 181
Score = 70.1 bits (170), Expect = 2e-10
Identities = 32/104 (30%), Positives = 58/104 (55%)
Query: 61 IELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFD 120
+E +G P I I + + K++L+VK+ G+++ + + +L+++WK +G
Sbjct: 67 LEFPDGEDGEPVITIGSEVLAAMNGLLKNSLIVKVPGRNMTISALSRKLREMWKPRGAMS 126
Query: 121 IMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
++D FFM++F+ + +TGGPW FD L V W+PEF
Sbjct: 127 VVDLPRKFFMIRFEAEEEYMAALTGGPWRAFDRYLMVQAWSPEF 170
>gb|AAF79677.1| F9C16.26 [Arabidopsis thaliana]
Length = 1902
Score = 62.4 bits (150), Expect = 3e-08
Identities = 51/209 (24%), Positives = 78/209 (36%), Gaps = 8/209 (3%)
Query: 63 LEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGGFDIM 122
+E+G P + P + WK LV + G S + + L IW GG +
Sbjct: 1196 MEDGT---PVVIAPPCVLLKSVEMWKGHLVAQFYGLSPSPAKIFNDLNPIWGRYGGITVR 1252
Query: 123 DNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPG 182
M+ + ++ V+ G W + V HW+ E ++ W
Sbjct: 1253 VISQTAAMIFIPSVSTRQWVMDVGFWQAGNCSCTVYHWSSEGLREFKELQSAPTWAILKN 1312
Query: 183 LNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVP-----VVGKIWV 237
+ Y + +AS +G P+ + + L +V V I L +P VV I
Sbjct: 1313 VPPQLYSLDGISVIASGIGEPLHTEKSKLDPINIGTTKVKVVIKLDIPLPDSVVVKDIHG 1372
Query: 238 NGHWYKVQYEGLHLICTNCGCYGHLGRNC 266
N V+Y C NCGCYGHL C
Sbjct: 1373 NSAKISVEYPRPPPKCLNCGCYGHLLSRC 1401
>emb|CAE02522.2| OSJNBb0003A12.9 [Oryza sativa (japonica cultivar-group)]
gi|50930347|ref|XP_474701.1| OSJNBb0003A12.9 [Oryza
sativa (japonica cultivar-group)]
Length = 884
Score = 61.2 bits (147), Expect = 7e-08
Identities = 42/157 (26%), Positives = 64/157 (40%), Gaps = 8/157 (5%)
Query: 126 NGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNL 185
+ F++ F D + VI GGPWL L V + +D +W+R L L
Sbjct: 170 DNLFIINFKAEGDYKFVIQGGPWLHKGDALLVAEFDGLTCPSEVSLDVVTIWIRIYDLPL 229
Query: 186 VYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNG------ 239
V ++ S G+ +VD R F R+ VE+ + P KI +
Sbjct: 230 VLMTKAIGELYGSKFGKVREVDVEEDGRNRHDFFRIRVELPVKKPPKSKIAIKTTVHGVE 289
Query: 240 --HWYKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFD 274
+ V+YE + C CG GH ++C +K S D
Sbjct: 290 AVRRFDVRYERVPFFCFICGYIGHSVKDCEKKISNMD 326
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488323|pir||T02730 RNA-directed DNA
polymerase homolog T9I4.6 - Arabidopsis thaliana
Length = 1529
Score = 60.8 bits (146), Expect = 9e-08
Identities = 67/322 (20%), Positives = 129/322 (39%), Gaps = 15/322 (4%)
Query: 73 IYIEPQTFQELCTPWKDALVVKLLGKSLGYNTMKDRLQKIWKLQGG---FDIMDNDNGFF 129
+ + + F++ W D L+ + S + + KIW L D D
Sbjct: 51 VQVPNEIFEDSTPLWDDLLIGRFPQISPHIAKVHVIVNKIWPLGDKTVKIDAYVVDTKTI 110
Query: 130 MVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYYD 189
+ +++ + +V+ G W I D + V+ W+P ++ +W+ + +
Sbjct: 111 KFRIRESSVRARVLRRGMWNIADMPMIVSKWSPVAEDAQPEIKTMPMWITIKNVPRSMFT 170
Query: 190 ESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-----WYKV 244
L +AS +G P K+ +T+ + A+V VE DLT + + +
Sbjct: 171 WKGLSFLASPIGEPKKLHPDTVLCNSFEEAKVFVEADLTQEMPKQFRFKSETGVDAMVEY 230
Query: 245 QYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPNH-HTAGGNNPPSNPEPSQPRQNPTQ 303
+Y L C++C +GH+ C+ +PS +P T PP E +P + ++
Sbjct: 231 KYPWLPPRCSSCSKWGHIQEVCLTRPSPNQLSTPTEIETEDKTEPPLMKE--KPLEILSK 288
Query: 304 TCPDAINSQLMACNQNGNSIIDHNKDVTANK-RNAINRIDDNQVLHGDWLVVTRRKKTPI 362
+ P A ++ + + + + N V NK + ++N G W V+ K
Sbjct: 289 S-PSATLTKTLNGDSHTQKVPMKNPTVLQNKGKEVAEENEENLKDEGPWHTVS-PAKVGR 346
Query: 363 QHSLNASKSVTHKT-NRFQALS 383
Q S + V H + +RF L+
Sbjct: 347 QRSPQPQEVVNHASPSRFDVLA 368
>emb|CAE02147.1| OSJNBa0081G05.2 [Oryza sativa (japonica cultivar-group)]
gi|50923489|ref|XP_472105.1| OSJNBa0081G05.2 [Oryza
sativa (japonica cultivar-group)]
Length = 1711
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/169 (24%), Positives = 73/169 (42%), Gaps = 8/169 (4%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+++ W+L+ + F+V F D + V+ GGPWL L V + +
Sbjct: 189 MRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSM 248
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
++ +WVR L LV ++ + S LG+ +VD + F R+ V++ +
Sbjct: 249 VPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVN 308
Query: 229 VP----VVGKIWVNG----HWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269
P + KI V G + ++YE + C CG GH + C ++
Sbjct: 309 RPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKR 357
>emb|CAE04660.2| OSJNBa0061G20.16 [Oryza sativa (japonica cultivar-group)]
Length = 1285
Score = 60.5 bits (145), Expect = 1e-07
Identities = 41/169 (24%), Positives = 73/169 (42%), Gaps = 8/169 (4%)
Query: 109 LQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPN 168
+++ W+L+ + F+V F D + V+ GGPWL L V + +
Sbjct: 189 MRRAWRLRAEMSYKSLKDNLFIVSFSAEGDHKFVLQGGPWLHRGDALLVADFNGLVSPSM 248
Query: 169 AKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLT 228
++ +WVR L LV ++ + S LG+ +VD + F R+ V++ +
Sbjct: 249 VPLETMPIWVRIYDLPLVMMNKERGVIYGSKLGKVREVDVQEDGCNKHDFFRIRVDLPVN 308
Query: 229 VP----VVGKIWVNG----HWYKVQYEGLHLICTNCGCYGHLGRNCMEK 269
P + KI V G + ++YE + C CG GH + C ++
Sbjct: 309 RPLKRMLAIKIKVKGAEEIRRFNLRYERIPHFCFFCGFIGHSDKECEKR 357
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410913|pir||B84426 hypothetical protein
At2g01550 [imported] - Arabidopsis thaliana
Length = 1449
Score = 60.1 bits (144), Expect = 2e-07
Identities = 62/278 (22%), Positives = 113/278 (40%), Gaps = 29/278 (10%)
Query: 25 IKQSSQKPSFRDKLLESNQDI---PIRE-------KENMIEKKLVRIELE-EGNRLLPKI 73
+ S Q P+ LE+ Q + P ++ K ++K V E++ + ++PK
Sbjct: 48 VSDSDQFPALSQSALETTQRMSHPPAKKSWVNAARKHTFTQQKFVSEEVDGQATVVVPK- 106
Query: 74 YIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKDRLQKIWKLQGGFDIMD----NDNGF 128
+ F W+D L+ L K+ + + KIW+L +++D ND+
Sbjct: 107 ----EVFLGAKPLWEDFLIGHFLNAKAPHVGKIHMIVNKIWRLGDKSNLIDVYAVNDSTI 162
Query: 129 FMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFASPNAKVDRTVVWVRFPGLNLVYY 188
+ A + + + G W I D + V+ W+P + +W+ + +
Sbjct: 163 -KFRIRNEAMRRRALNRGMWNIMDLPMVVSKWSPFAEETQPAMKSIQLWITLTDVPPSLF 221
Query: 189 DESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEIDLTVPVVGKIWVNGH-------W 241
+ L +ASA+G+PI++ T A++ VE DLT + + G
Sbjct: 222 TDKGLEFLASAVGKPIRLHPKTESCSSFDEAQLLVEADLTKELPKEFVFTGEEEGELAAV 281
Query: 242 YKVQYEGLHLICTNCGCYGHLGRNCMEKPSTFDPRSPN 279
K Y L C+ C +GHL +C+ T +PN
Sbjct: 282 IKYSYPWLPPRCSCCDKWGHLRDSCLSALKTCSRDTPN 319
>emb|CAB81573.1| putative protein [Arabidopsis thaliana]
gi|15229262|ref|NP_189918.1| hypothetical protein
[Arabidopsis thaliana] gi|11358363|pir||T47374
hypothetical protein T5C2.20 - Arabidopsis thaliana
Length = 510
Score = 59.3 bits (142), Expect = 3e-07
Identities = 51/244 (20%), Positives = 103/244 (41%), Gaps = 18/244 (7%)
Query: 49 EKENMIEKKLVRIELEEGNRLLPKIYIEPQTFQELCTPWKDALVVKLLG-KSLGYNTMKD 107
+K + ++K +E++ K+ + + F W+D LV +L K+ +
Sbjct: 91 QKRSFTKQKFEVVEVDGQE----KVVVPKEVFLGAKPLWEDFLVGNILNSKAPHVGKIHM 146
Query: 108 RLQKIWKLQGG---FDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEF 164
+ KIW+L D+++ + + A + +++ W I + ++ WTP
Sbjct: 147 IVNKIWRLGDKSTLIDVLEVNESTVKFRVRNEAMRHRILNRRMWNIMGLPMIISKWTPYS 206
Query: 165 ASPNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVE 224
+ +WV + L + + L +AS +G+P+++ T E + A++ VE
Sbjct: 207 EDVQPALKSIPLWVTLSNVPLTMFTDKGLEFLASVVGKPVRLHPKTEACESFEEAKILVE 266
Query: 225 IDLTVPVVGKIWVNGH-------WYKVQYEGLHLICTNCGCYGHLGRNCM---EKPSTFD 274
DLT + + ++G Y L C C +GHL +C+ +KP++
Sbjct: 267 ADLTKDLPKEYILSGEEEGELDAVIHYSYPWLSPHCQVCKKWGHLRDSCLLEKQKPTSTL 326
Query: 275 PRSP 278
SP
Sbjct: 327 NNSP 330
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1694
Score = 58.2 bits (139), Expect = 6e-07
Identities = 40/168 (23%), Positives = 68/168 (39%), Gaps = 8/168 (4%)
Query: 107 DRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFAS 166
D +++ W+L+ + F++ F D + VI GGPW+ L V +
Sbjct: 290 DDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCP 349
Query: 167 PNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEID 226
N +D +WVR L LV + S LG+ +VD + F + V++
Sbjct: 350 SNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLP 409
Query: 227 LTVPVVGKIWVNG--------HWYKVQYEGLHLICTNCGCYGHLGRNC 266
+ P+ +I + + + YE + C CG GH R+C
Sbjct: 410 VKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 457
>gb|AAM01179.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1888
Score = 58.2 bits (139), Expect = 6e-07
Identities = 40/168 (23%), Positives = 68/168 (39%), Gaps = 8/168 (4%)
Query: 107 DRLQKIWKLQGGFDIMDNDNGFFMVKFDQAADKEKVITGGPWLIFDHCLAVTHWTPEFAS 166
D +++ W+L+ + F++ F D + VI GGPW+ L V +
Sbjct: 264 DDMRRAWRLRADISYKSLRDNMFIITFSAEGDYDFVIKGGPWIHRGDALLVASFDGITCP 323
Query: 167 PNAKVDRTVVWVRFPGLNLVYYDESFLLAMASALGRPIKVDTNTLKVERGKFARVCVEID 226
N +D +WVR L LV + S LG+ +VD + F + V++
Sbjct: 324 SNVPLDVVPIWVRIYDLPLVLMTKVRGEMFGSKLGKVREVDVGDDGRNKHDFFHIRVDLP 383
Query: 227 LTVPVVGKIWVNG--------HWYKVQYEGLHLICTNCGCYGHLGRNC 266
+ P+ +I + + + YE + C CG GH R+C
Sbjct: 384 VKRPLKSQIAIRMTVQGKEVLRRFDLHYERVPHFCFICGFIGHSDRDC 431
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 950,926,543
Number of Sequences: 2540612
Number of extensions: 42987423
Number of successful extensions: 155536
Number of sequences better than 10.0: 446
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 1204
Number of HSP's that attempted gapping in prelim test: 153621
Number of HSP's gapped (non-prelim): 1862
length of query: 504
length of database: 863,360,394
effective HSP length: 132
effective length of query: 372
effective length of database: 527,999,610
effective search space: 196415854920
effective search space used: 196415854920
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC140549.12