BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140549.10 - phase: 0
(184 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA02115.1| GTP-binding protein [Pisum sativum] gi|738939|pr... 297 8e-80
emb|CAA66447.1| RAB1A [Lotus corniculatus var. japonicus] 284 7e-76
gb|AAD10389.1| Rab1-like small GTP-binding protein [Petunia x hy... 277 9e-74
pir||S39565 GTP-binding protein rab1 - soybean gi|414832|gb|AAA3... 276 3e-73
gb|AAA80679.1| small GTP-binding protein 274 8e-73
gb|AAF23189.1| putative GTP-binding protein (ATFP8) [Arabidopsis... 253 2e-66
emb|CAH17998.1| RAB1-like [Poa pratensis] 253 2e-66
emb|CAA98160.1| RAB1C [Lotus corniculatus var. japonicus] 252 3e-66
emb|CAB10533.1| GTP-binding RAB1C like protein [Arabidopsis thal... 251 7e-66
emb|CAA44919.1| yptm2 [Zea mays] gi|466172|sp|Q05737|YPTM2_MAIZE... 251 9e-66
emb|CAA69701.1| small GTP-binding protein [Nicotiana plumbaginif... 251 9e-66
ref|XP_467097.1| putative GTP-binding protein YPTM2 [Oryza sativ... 251 9e-66
gb|AAB04618.1| ypt-related protein gi|7438392|pir||T14391 GTP-bi... 250 1e-65
emb|CAB78756.1| ras-related small GTP-binding protein RAB1c [Ara... 249 2e-65
dbj|BAD87657.1| Ras-related protein RIC1 [Oryza sativa (japonica... 249 2e-65
dbj|BAA76422.1| rab-type small GTP-binding protein [Cicer arieti... 249 3e-65
dbj|BAA02116.1| GTP-binding protein [Pisum sativum] gi|738940|pr... 249 3e-65
emb|CAA82707.1| guanine nucleotide regulatory protein [Vicia fab... 248 4e-65
gb|AAU44168.1| putative rab1 small GTP-binding protein [Oryza sa... 248 6e-65
emb|CAA98161.1| RAB1D [Lotus corniculatus var. japonicus] 246 2e-64
>dbj|BAA02115.1| GTP-binding protein [Pisum sativum] gi|738939|prf||2001457G
GTP-binding protein
Length = 201
Score = 297 bits (761), Expect = 8e-80
Identities = 158/197 (80%), Positives = 165/197 (83%), Gaps = 19/197 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLLIIGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD+ESFNNVKQWLHEIDRYAN SV KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLHEIDRYANDSVCKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T+NK+V T TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK KMGSQP+GSKS AE
Sbjct: 126 TENKVVQTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPSGSKS-AE 184
Query: 168 SVQMKGQPIQQNTNCCG 184
SVQMKGQPI QN NCCG
Sbjct: 185 SVQMKGQPIPQNNNCCG 201
>emb|CAA66447.1| RAB1A [Lotus corniculatus var. japonicus]
Length = 201
Score = 284 bits (727), Expect = 7e-76
Identities = 152/197 (77%), Positives = 164/197 (83%), Gaps = 19/197 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDFA------KPPSCRL------ 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF + + +L
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN SV KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+NK+V T TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK KMGSQPTGSKS AE
Sbjct: 126 VENKVVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPTGSKS-AE 184
Query: 168 SVQMKGQPIQQNTNCCG 184
+VQMKGQPI Q +NCCG
Sbjct: 185 TVQMKGQPIPQKSNCCG 201
>gb|AAD10389.1| Rab1-like small GTP-binding protein [Petunia x hybrida]
gi|7438373|pir||S72515 GTP-binding protein RAB1 - garden
petunia
Length = 202
Score = 277 bits (709), Expect = 9e-74
Identities = 143/197 (72%), Positives = 157/197 (79%), Gaps = 18/197 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL EIDRYAN SV KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLSEIDRYANESVCKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+NK+V T T KA ADELGIPFLETSAKDSINVEQAFLTMA EIK KMG+QP G+K
Sbjct: 126 VENKVVDTQTGKALADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGNQPAGAKKTGS 185
Query: 168 SVQMKGQPIQQNTNCCG 184
+VQ+KGQPI+Q +NCCG
Sbjct: 186 TVQIKGQPIEQKSNCCG 202
>pir||S39565 GTP-binding protein rab1 - soybean gi|414832|gb|AAA34003.1| Rab7p
Length = 201
Score = 276 bits (705), Expect = 3e-73
Identities = 149/197 (75%), Positives = 160/197 (80%), Gaps = 19/197 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELEGKTVKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN +V KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDTVCKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
DNK+V + TAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIK KMGSQ T KS AE
Sbjct: 126 VDNKVVDSLTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQTTTGKS-AE 184
Query: 168 SVQMKGQPIQQNTNCCG 184
SVQMKGQPI Q +NCCG
Sbjct: 185 SVQMKGQPIPQKSNCCG 201
>gb|AAA80679.1| small GTP-binding protein
Length = 202
Score = 274 bits (701), Expect = 8e-73
Identities = 142/197 (72%), Positives = 156/197 (79%), Gaps = 18/197 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVT++ESFNNVKQWL+EIDRYAN SV KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANESVCKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+NK+V T KA ADELGIPFLETSAKDSINVEQAFLTMA EIK KMG+QP G+K
Sbjct: 126 VENKVVDTQMGKALADELGIPFLETSAKDSINVEQAFLTMAGEIKKKMGNQPAGAKRTGS 185
Query: 168 SVQMKGQPIQQNTNCCG 184
+VQ+KGQPI+Q NCCG
Sbjct: 186 TVQIKGQPIEQKGNCCG 202
>gb|AAF23189.1| putative GTP-binding protein (ATFP8) [Arabidopsis thaliana]
gi|26451349|dbj|BAC42775.1| putative GTP-binding protein
ATFP8 [Arabidopsis thaliana] gi|28973343|gb|AAO63996.1|
putative GTP-binding protein (ATFP8) [Arabidopsis
thaliana] gi|4097557|gb|AAD00111.1| ATFP8 [Arabidopsis
thaliana] gi|15229836|ref|NP_187779.1| Ras-related
GTP-binding protein, putative [Arabidopsis thaliana]
Length = 205
Score = 253 bits (646), Expect = 2e-66
Identities = 137/199 (68%), Positives = 153/199 (76%), Gaps = 20/199 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADD+Y D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYD T++ESFNNVKQWL EIDRYAN SV KLL+GNK D+
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDM 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSK-SAA 166
++K+V T T +A ADELGIPFLETSAKDSINVEQAFLT+A EIK KMGSQ +K S
Sbjct: 126 VESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGP 185
Query: 167 ESVQMKGQPIQQNT-NCCG 184
+VQMKGQPIQQN CCG
Sbjct: 186 GTVQMKGQPIQQNNGGCCG 204
>emb|CAH17998.1| RAB1-like [Poa pratensis]
Length = 203
Score = 253 bits (645), Expect = 2e-66
Identities = 127/196 (64%), Positives = 155/196 (78%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTMKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD +SFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLNEIDRYASDNVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
TD K+V TAKAFADE+GIPF+ETSAK+++NVEQAF+ M+A IK++M SQP + +
Sbjct: 126 TDKKVVSYETAKAFADEIGIPFMETSAKNALNVEQAFMAMSASIKDRMASQPAANNARPA 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP++Q T+CC
Sbjct: 186 TVQIRGQPVEQKTSCC 201
>emb|CAA98160.1| RAB1C [Lotus corniculatus var. japonicus]
Length = 202
Score = 252 bits (644), Expect = 3e-66
Identities = 130/196 (66%), Positives = 154/196 (78%), Gaps = 19/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T+NK+V TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP + +
Sbjct: 126 TENKVVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPV-NNARPP 184
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 185 TVQIRGQPVNQKSGCC 200
>emb|CAB10533.1| GTP-binding RAB1C like protein [Arabidopsis thaliana]
gi|7438375|pir||H71444 GTP-binding protein - Arabidopsis
thaliana
Length = 221
Score = 251 bits (641), Expect = 7e-66
Identities = 130/197 (65%), Positives = 151/197 (75%), Gaps = 19/197 (9%)
Query: 5 SDYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL--- 53
SDYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 24 SDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDT 83
Query: 54 -------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCD 106
TITSSYYRGAHGII+ YDVTD+ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCD
Sbjct: 84 AGQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCD 143
Query: 107 LTDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAA 166
LT K+V T TAKAFADELGIPFLETSAK++ NVE+AF+ M A IK +M SQP G S
Sbjct: 144 LTSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG-SKP 202
Query: 167 ESVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 203 PTVQIRGQPVNQQSGCC 219
>emb|CAA44919.1| yptm2 [Zea mays] gi|466172|sp|Q05737|YPTM2_MAIZE GTP-binding
protein YPTM2
Length = 203
Score = 251 bits (640), Expect = 9e-66
Identities = 129/196 (65%), Positives = 153/196 (77%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T NK+V T TAKAFADE+GIPF+ETSAK++ NV+QAF+ MAA IK++M SQP + +
Sbjct: 126 TANKVVATETAKAFADEMGIPFMETSAKNATNVQQAFMAMAASIKDRMASQPAAANARPA 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q T+CC
Sbjct: 186 TVQIRGQPVNQKTSCC 201
>emb|CAA69701.1| small GTP-binding protein [Nicotiana plumbaginifolia]
Length = 203
Score = 251 bits (640), Expect = 9e-66
Identities = 128/196 (65%), Positives = 151/196 (76%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL EIDRYA+ SV+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLSEIDRYASDSVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V T TA+AFADE+GIPF+ETSAK++ NVEQAF+ MAA IKN+M SQP + +
Sbjct: 126 TAQKVVSTETAQAFADEIGIPFMETSAKNATNVEQAFMAMAASIKNRMASQPASNNARPP 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 186 TVQIRGQPVNQKSGCC 201
>ref|XP_467097.1| putative GTP-binding protein YPTM2 [Oryza sativa (japonica
cultivar-group)] gi|14140133|emb|CAC39050.1| putative
GTP-binding protein [Oryza sativa]
gi|49387522|dbj|BAD24987.1| putative GTP-binding protein
YPTM2 [Oryza sativa (japonica cultivar-group)]
Length = 203
Score = 251 bits (640), Expect = 9e-66
Identities = 129/196 (65%), Positives = 153/196 (77%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T NK+V + TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAA IK++M SQP + +
Sbjct: 126 TANKVVSSETAKAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAAANARPP 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q T+CC
Sbjct: 186 TVQIRGQPVNQKTSCC 201
>gb|AAB04618.1| ypt-related protein gi|7438392|pir||T14391 GTP-binding protein
homolog - turnip
Length = 206
Score = 250 bits (639), Expect = 1e-65
Identities = 136/200 (68%), Positives = 152/200 (76%), Gaps = 21/200 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADD+Y D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYD T++ESFNNVKQWL EIDRYAN SV KLL+GNK D+
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANDSVCKLLIGNKNDM 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSK-SAA 166
++K+V T T KA ADELGIPFLETSAKDS NVEQAFLT+A EIK KMGS +K S +
Sbjct: 126 VESKVVSTETGKALADELGIPFLETSAKDSTNVEQAFLTIAGEIKKKMGSHTNANKTSGS 185
Query: 167 ESVQMKGQPIQQNT--NCCG 184
+VQMKGQPIQQN CCG
Sbjct: 186 GTVQMKGQPIQQNNGGGCCG 205
>emb|CAB78756.1| ras-related small GTP-binding protein RAB1c [Arabidopsis thaliana]
gi|6651023|gb|AAF22133.1| ras-related small GTP-binding
protein [Arabidopsis thaliana]
gi|15529161|gb|AAK97675.1| AT4g17530/dl4800c
[Arabidopsis thaliana] gi|15236555|ref|NP_193486.1|
Ras-related GTP-binding protein, putative [Arabidopsis
thaliana]
Length = 202
Score = 249 bits (637), Expect = 2e-65
Identities = 129/196 (65%), Positives = 150/196 (75%), Gaps = 19/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+ YDVTD+ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVTYDVTDLESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T K+V T TAKAFADELGIPFLETSAK++ NVE+AF+ M A IK +M SQP G S
Sbjct: 126 TSQKVVSTETAKAFADELGIPFLETSAKNATNVEEAFMAMTAAIKTRMASQPAGG-SKPP 184
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 185 TVQIRGQPVNQQSGCC 200
>dbj|BAD87657.1| Ras-related protein RIC1 [Oryza sativa (japonica cultivar-group)]
gi|57899331|dbj|BAD87942.1| Ras-related protein RIC1
[Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 249 bits (637), Expect = 2e-65
Identities = 127/196 (64%), Positives = 151/196 (76%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY ++YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
+N++V KA ADE+GIPFLETSAKD+ NVE+AF+TMA EIKN+M SQP + S
Sbjct: 126 AENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPA 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQM+GQP+ Q ++CC
Sbjct: 186 TVQMRGQPVAQQSSCC 201
>dbj|BAA76422.1| rab-type small GTP-binding protein [Cicer arietinum]
Length = 202
Score = 249 bits (636), Expect = 3e-65
Identities = 129/196 (65%), Positives = 153/196 (77%), Gaps = 19/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
NK+V + TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP + +
Sbjct: 126 AANKVVSSETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQP-ANNARPP 184
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 185 TVQIRGQPMNQKSGCC 200
>dbj|BAA02116.1| GTP-binding protein [Pisum sativum] gi|738940|prf||2001457H
GTP-binding protein
Length = 202
Score = 249 bits (635), Expect = 3e-65
Identities = 129/196 (65%), Positives = 154/196 (77%), Gaps = 19/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGII+VYDVTD ESFNNVKQWL+EIDRYA+ +V+KLLVGNK DL
Sbjct: 66 GQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
DNK+V + TAKAFADE+GIPF+ETSAK++ NVEQAF+ MAAEIKN+M SQP+ + +
Sbjct: 126 ADNKVVSSETAKAFADEIGIPFMETSAKNANNVEQAFMAMAAEIKNRMASQPS-NNARPP 184
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 185 TVQIRGQPVNQKSGCC 200
>emb|CAA82707.1| guanine nucleotide regulatory protein [Vicia faba]
gi|303734|dbj|BAA02118.1| GTP-binding protein [Pisum
sativum] gi|541978|pir||S41430 GTP-binding protein,
ras-like (clone vfa-ypt1) - fava bean
gi|1098293|prf||2115367A small GTP-binding protein
gi|738942|prf||2001457K GTP-binding protein
Length = 202
Score = 248 bits (634), Expect = 4e-65
Identities = 130/196 (66%), Positives = 151/196 (76%), Gaps = 19/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRFADDSY D+YISTIGVDF K ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFADDSYIDSYISTIGVDFKIRTVEQDGKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T+N+ V TAKAFADE+GIPF+ETSAKDS NVEQAF+ MA+ IK +M SQPT + +
Sbjct: 126 TENRAVPYETAKAFADEIGIPFMETSAKDSTNVEQAFMAMASSIKERMASQPT-NNARPP 184
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 185 TVQIRGQPVGQKSGCC 200
>gb|AAU44168.1| putative rab1 small GTP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 205
Score = 248 bits (633), Expect = 6e-65
Identities = 131/199 (65%), Positives = 152/199 (75%), Gaps = 21/199 (10%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDSSVGKSCLLLRFADDSY DTYISTIGVDF K ++
Sbjct: 5 DYLFKLLLIGDSSVGKSCLLLRFADDSYIDTYISTIGVDFKIRTIELDGKTVKLQIWDTA 64
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD+ESFNNVKQWL EIDRYA+ SV KLLVGNKCDL
Sbjct: 65 GQERFRTITSSYYRGAHGIIIVYDVTDMESFNNVKQWLSEIDRYASDSVCKLLVGNKCDL 124
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
D+K+V T AKAFA+ LGI FLETSAK+SINVE+AFLTM+++IK +M +QP +
Sbjct: 125 VDSKVVDTEEAKAFAESLGISFLETSAKESINVEEAFLTMSSDIKKRMATQPAVERKPTV 184
Query: 168 SVQMKGQPIQQ---NTNCC 183
+ M+GQPIQQ +++CC
Sbjct: 185 HIHMRGQPIQQQNSSSSCC 203
>emb|CAA98161.1| RAB1D [Lotus corniculatus var. japonicus]
Length = 203
Score = 246 bits (628), Expect = 2e-64
Identities = 126/196 (64%), Positives = 149/196 (75%), Gaps = 18/196 (9%)
Query: 6 DYLFKLLIIGDSSVGKSCLLLRFADDSYDDTYISTIGVDF--------AKPPSCRL---- 53
DYLFKLL+IGDS VGKSCLLLRF DDSY ++YISTIGVDF AK ++
Sbjct: 6 DYLFKLLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKLQIWDTA 65
Query: 54 ------TITSSYYRGAHGIIIVYDVTDIESFNNVKQWLHEIDRYANHSVSKLLVGNKCDL 107
TITSSYYRGAHGIIIVYDVTD ESFNNVKQWL EIDRYA+ +V+KLLVGNKCDL
Sbjct: 66 GQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKCDL 125
Query: 108 TDNKLVHTHTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKNKMGSQPTGSKSAAE 167
T N+ V TAK FAD++GIPF+ETSAKD+ NVEQAF+ M+A IKN+M SQP+ +
Sbjct: 126 TANRAVSYDTAKEFADQIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPSANNGRPP 185
Query: 168 SVQMKGQPIQQNTNCC 183
+VQ++GQP+ Q + CC
Sbjct: 186 TVQIRGQPVGQKSGCC 201
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,379,482
Number of Sequences: 2540612
Number of extensions: 10968335
Number of successful extensions: 37834
Number of sequences better than 10.0: 4132
Number of HSP's better than 10.0 without gapping: 3499
Number of HSP's successfully gapped in prelim test: 635
Number of HSP's that attempted gapping in prelim test: 29729
Number of HSP's gapped (non-prelim): 4580
length of query: 184
length of database: 863,360,394
effective HSP length: 120
effective length of query: 64
effective length of database: 558,486,954
effective search space: 35743165056
effective search space used: 35743165056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 71 (32.0 bits)
Medicago: description of AC140549.10