BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140546.3 + phase: 0
(266 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65676.1| putative chloroplast initiation factor 3 [Arabido... 283 3e-75
gb|AAL66915.1| putative protein [Arabidopsis thaliana] gi|184176... 282 8e-75
ref|XP_468241.1| translation initiation factor IF-3-like [Oryza ... 205 9e-52
emb|CAE06608.1| translation initiation factor IF-3 [Synechococcu... 134 2e-30
gb|AAQ00842.1| Translation initiation factor 3 [Prochlorococcus ... 133 6e-30
ref|ZP_00513952.1| Initiation factor 3 [Crocosphaera watsonii WH... 131 2e-29
emb|CAE20294.1| Translatioin Initiation factor 3 [Prochlorococcu... 131 2e-29
sp|Q8YNE3|IF3_ANASP Translation initiation factor IF-3 gi|455066... 131 2e-29
dbj|BAB76322.1| translation initiation factor IF-3 [Nostoc sp. P... 131 2e-29
emb|CAB79787.1| putative protein [Arabidopsis thaliana] gi|57254... 130 3e-29
ref|NP_440210.1| initiation factor IF-3 [Synechocystis sp. PCC 6... 128 1e-28
ref|YP_172148.1| translation initiation factor IF-3 [Synechococc... 127 3e-28
ref|ZP_00268467.1| COG0290: Translation initiation factor 3 (IF-... 127 4e-28
ref|NP_682410.1| translation initiation factor IF-3 [Thermosynec... 127 4e-28
ref|NP_623290.1| Translation initiation factor IF3 [Thermoanaero... 126 7e-28
pir||A54391 translation initiation factor IF-3 precursor, chloro... 126 7e-28
sp|Q9MS97|IF3C_GALSU Translation initiation factor IF-3, chlorop... 125 9e-28
ref|ZP_00327477.1| COG0290: Translation initiation factor 3 (IF-... 125 2e-27
ref|NP_214219.1| initiation factor IF-3 [Aquifex aeolicus VF5] g... 125 2e-27
ref|ZP_00132061.2| COG0290: Translation initiation factor 3 (IF-... 124 2e-27
>gb|AAM65676.1| putative chloroplast initiation factor 3 [Arabidopsis thaliana]
gi|20465301|gb|AAM20054.1| putative chloroplast
initiation factor 3 [Arabidopsis thaliana]
gi|18176092|gb|AAL59982.1| putative chloroplast
initiation factor 3 [Arabidopsis thaliana]
gi|3738333|gb|AAC63674.1| putative chloroplast
initiation factor 3 [Arabidopsis thaliana]
gi|25412188|pir||B84632 probable chloroplast initiation
factor 3 [imported] - Arabidopsis thaliana
gi|15224088|ref|NP_179984.1| translation initiation
factor 3 (IF-3) family protein [Arabidopsis thaliana]
Length = 312
Score = 283 bits (724), Expect = 3e-75
Identities = 162/282 (57%), Positives = 200/282 (70%), Gaps = 24/282 (8%)
Query: 1 MAGITSTTVVPVKLKASHFFSNKLSIPHSLNLQSSPSFTLPSHATVRYGVNLRPSAY--- 57
MAGITS+TV A K HSL S +L T NL PS
Sbjct: 1 MAGITSSTV---GFNAVFTGITKTVSSHSLFSVDSKLCSLRLSKTELSFTNLTPSPRRAF 57
Query: 58 -------GGGGNFR-----RAPPEKDADDGQALDLSTLSSNTVRLIDQSQNMVGVVSLDQ 105
GGGG +R R K+A+ +ALD+S++ S TVRLID QNM+G+VS D+
Sbjct: 58 AVTCRFGGGGGGYRFSGDNRRGRPKEAEIDEALDISSIRSATVRLIDGQQNMLGLVSKDE 117
Query: 106 AIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMG 165
A+RMA+DAELDLVI+S +ADPPVV++M+YSKYRYE QK+K+DQQKK+ +RMDLKELKMG
Sbjct: 118 AVRMADDAELDLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMG 175
Query: 166 YNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEE 225
YNIDQHDYSVRL+AA+KFL DGDKVKVIV++KGRE EFRN AIEL+RRFQ ++G+LATEE
Sbjct: 176 YNIDQHDYSVRLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEE 235
Query: 226 AKNFRDKNIFITLIPNKTEVQKPQETPT----KAATDEVSVS 263
+KNFRD+N+FI L+PNK ++KPQE PT K A +E S S
Sbjct: 236 SKNFRDRNMFIILVPNKEMIRKPQEPPTRKKKKTAENEASAS 277
>gb|AAL66915.1| putative protein [Arabidopsis thaliana]
gi|18417644|ref|NP_567851.1| translation initiation
factor 3 (IF-3) family protein [Arabidopsis thaliana]
gi|14596121|gb|AAK68788.1| putative protein [Arabidopsis
thaliana]
Length = 281
Score = 282 bits (721), Expect = 8e-75
Identities = 156/273 (57%), Positives = 196/273 (71%), Gaps = 23/273 (8%)
Query: 1 MAGITSTTVVPVKLKASHFFSNKLSIPHSLNLQSSPSFTLPSHA-TVRYGVNLRPSAYGG 59
+AG T T PVK K F +L +P + SP A T RYG GG
Sbjct: 14 LAGATKTVSHPVKSK---LFGLRLCVPEFSIVSLSPYHHRRCPAITCRYG--------GG 62
Query: 60 GGNFRRAPPE-----KDADDGQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAE 114
GG R P + K+++D +LD+S + S TVRLID QNM+G+VS ++A+R AEDAE
Sbjct: 63 GGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAE 122
Query: 115 LDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYS 174
LDLVI+S +ADPPVVR+M+YSKYRYE QK+K++QQKK+ +RMDLKELKMGYNIDQHDYS
Sbjct: 123 LDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKT--TRMDLKELKMGYNIDQHDYS 180
Query: 175 VRLKAARKFLSDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFRDKNI 234
VR++AARKFL DGDKVKVIVN+KGRE EFRN AIEL+RRFQ ++G+L TEE+KNFRD+N+
Sbjct: 181 VRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELLRRFQTEIGELGTEESKNFRDRNL 240
Query: 235 FITLIPNKTEVQKPQETP----TKAATDEVSVS 263
FI L+PNK ++K QE P K A D+VS +
Sbjct: 241 FIVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 273
>ref|XP_468241.1| translation initiation factor IF-3-like [Oryza sativa (japonica
cultivar-group)] gi|47497598|dbj|BAD19668.1| translation
initiation factor IF-3-like [Oryza sativa (japonica
cultivar-group)]
Length = 200
Score = 205 bits (522), Expect = 9e-52
Identities = 100/164 (60%), Positives = 132/164 (79%), Gaps = 3/164 (1%)
Query: 97 MVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIM---NYSKYRYELQKKKRDQQKKSA 153
MVGVVS+ +A+++A++ +L L I+S + DPPV+R+ +Y K++YE QKKKR QQK+S
Sbjct: 1 MVGVVSVSEAVQIADENDLILAILSLDGDPPVLRLFQEKDYKKHKYEQQKKKRTQQKRSV 60
Query: 154 ASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNAIELIRR 213
A RM LKELKMGYNID HDYSVRLKAARKFL GDKVK++VNLKGRE ++ AIEL+RR
Sbjct: 61 AKRMGLKELKMGYNIDIHDYSVRLKAARKFLKAGDKVKIMVNLKGRENLYKKQAIELLRR 120
Query: 214 FQNDVGKLATEEAKNFRDKNIFITLIPNKTEVQKPQETPTKAAT 257
FQNDVG++ATEE+KNF+++NI++ L+PNK +QK Q+ K T
Sbjct: 121 FQNDVGEMATEESKNFQERNIYLVLVPNKIAIQKEQDELNKKDT 164
>emb|CAE06608.1| translation initiation factor IF-3 [Synechococcus sp. WH 8102]
gi|33864629|ref|NP_896188.1| translation initiation
factor IF-3 [Synechococcus sp. WH 8102]
gi|39931219|sp|Q7UA08|IF3_SYNPX Translation initiation
factor IF-3
Length = 217
Score = 134 bits (338), Expect = 2e-30
Identities = 74/177 (41%), Positives = 114/177 (63%), Gaps = 6/177 (3%)
Query: 83 LSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQ 142
+S +R++D + +GV+S ++A+ +A++ ELDLV+VS +ADPPV RIM+Y K+++E +
Sbjct: 23 ISYPQLRVVDSDGSQLGVISREEALEVAKERELDLVLVSEKADPPVCRIMDYGKFKFEQE 82
Query: 143 KKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKE 202
KK ++ +KKS + ++KE+KM Y IDQHDY VR+ A +FL GDKVK V +GRE +
Sbjct: 83 KKAKEAKKKS--HQTEVKEVKMRYKIDQHDYDVRIGQAVRFLKAGDKVKCTVIFRGREIQ 140
Query: 203 FRNNAIELIRRFQNDV-GKLATEEAKNFRDKNIFITLIPNKTEVQKPQE---TPTKA 255
A L+RR D+ K ++A +N+ + L P KT + K +E PTKA
Sbjct: 141 HTALAETLLRRMAKDLEEKAEIQQAPKREGRNMIMFLTPRKTPLVKKEEKEAAPTKA 197
>gb|AAQ00842.1| Translation initiation factor 3 [Prochlorococcus marinus subsp.
marinus str. CCMP1375] gi|33241247|ref|NP_876189.1|
Translation initiation factor 3 [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|39931228|sp|Q7V9N2|IF3_PROMA Translation initiation
factor IF-3
Length = 201
Score = 133 bits (334), Expect = 6e-30
Identities = 69/170 (40%), Positives = 111/170 (64%), Gaps = 3/170 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R++D +G++S ++A+ +A+D ELDLV+VS +ADPPV RIMNY K+++E +KK ++
Sbjct: 28 LRVVDADGTQLGIISREEALDVAQDRELDLVLVSEKADPPVCRIMNYGKFKFEQEKKAKE 87
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KKS + ++KE+KM Y ID+HDY VR+ A +FL GDKVK V +GRE + N A
Sbjct: 88 AKKKS--HQTEVKEVKMRYKIDEHDYQVRIGQATRFLKAGDKVKCTVIFRGREIQHTNLA 145
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNKTEVQKPQETPTKAA 256
L+ R D+ + A ++A +N+ + L P KT + K ++ +A+
Sbjct: 146 ESLLARMAKDLEEPAEVQQAPKREGRNMIMFLTPRKTPLIKKEQELEEAS 195
>ref|ZP_00513952.1| Initiation factor 3 [Crocosphaera watsonii WH 8501]
gi|67857916|gb|EAM53155.1| Initiation factor 3
[Crocosphaera watsonii WH 8501]
Length = 179
Score = 131 bits (330), Expect = 2e-29
Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R+ID + +G+++ D+A+++A++ ELDLV+VS A PPV RIM+Y KY++E +KK R+
Sbjct: 23 IRVIDSDGSQLGIITPDEALKVAQERELDLVLVSETAKPPVCRIMDYGKYKFEQEKKARE 82
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK + D+KE+KM Y I +HDY VR+ A++FL GDKVK + +GRE + N A
Sbjct: 83 AKKKQHTA--DVKEVKMRYKISEHDYQVRVNQAKRFLKSGDKVKATITFRGREIQHSNLA 140
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
+L+ R D+ +LA ++A +N+ + + P K
Sbjct: 141 QDLLSRMATDLKELAEIQQAPKREGRNMMMLMSPKK 176
>emb|CAE20294.1| Translatioin Initiation factor 3 [Prochlorococcus marinus str. MIT
9313] gi|33862392|ref|NP_893952.1| Translatioin
Initiation factor 3 [Prochlorococcus marinus str. MIT
9313] gi|39931215|sp|Q7TV76|IF3_PROMM Translation
initiation factor IF-3
Length = 219
Score = 131 bits (329), Expect = 2e-29
Identities = 71/172 (41%), Positives = 112/172 (64%), Gaps = 6/172 (3%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R++D +GV++ ++A+ +A+D ELDLV+VS +ADPPV RIM+Y K+++E +KK ++
Sbjct: 28 LRVVDADGTQLGVINREEALDVAKDRELDLVLVSEKADPPVCRIMDYGKFKFEQEKKAKE 87
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KKS + ++KE+KM Y IDQHDY+VR+ A +FL GDKVK V +GRE + A
Sbjct: 88 AKKKS--HQTEVKEVKMRYKIDQHDYNVRIGQAVRFLKAGDKVKCTVIFRGREIQHTALA 145
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNKT---EVQKPQETPTKA 255
L+RR D+ + A ++A +N+ + L P KT + K + PT+A
Sbjct: 146 ETLLRRMAKDLEEQAEIQQAPKREGRNMIMFLTPRKTPLIKTDKENQIPTRA 197
>sp|Q8YNE3|IF3_ANASP Translation initiation factor IF-3 gi|45506634|ref|ZP_00158986.1|
COG0290: Translation initiation factor 3 (IF-3)
[Anabaena variabilis ATCC 29413]
Length = 177
Score = 131 bits (329), Expect = 2e-29
Identities = 64/156 (41%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R+ID + +G+++ +A+++AE+ ELDLV++S +ADPPV RIM+Y KY++E +KK R+
Sbjct: 24 IRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFEQEKKARE 83
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK + D+KE+KM Y I++HDY+VR+K A +FL DGDKVK V +GRE + + A
Sbjct: 84 ARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLA 141
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
+L++R D+ ++A +N+ + + P K
Sbjct: 142 EDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 177
>dbj|BAB76322.1| translation initiation factor IF-3 [Nostoc sp. PCC 7120]
gi|17232115|ref|NP_488663.1| translation initiation
factor IF-3 [Nostoc sp. PCC 7120]
gi|25299585|pir||AG2383 translation initiation factor
IF-3 [imported] - Nostoc sp. (strain PCC 7120)
Length = 204
Score = 131 bits (329), Expect = 2e-29
Identities = 64/156 (41%), Positives = 106/156 (67%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R+ID + +G+++ +A+++AE+ ELDLV++S +ADPPV RIM+Y KY++E +KK R+
Sbjct: 51 IRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFEQEKKARE 110
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK + D+KE+KM Y I++HDY+VR+K A +FL DGDKVK V +GRE + + A
Sbjct: 111 ARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQHSDLA 168
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
+L++R D+ ++A +N+ + + P K
Sbjct: 169 EDLLKRMATDLEPFGEVQQAPKKEGRNMMMLISPKK 204
>emb|CAB79787.1| putative protein [Arabidopsis thaliana] gi|5725433|emb|CAB52442.1|
putative protein [Arabidopsis thaliana]
gi|25407671|pir||B85359 hypothetical protein AT4g30690
[imported] - Arabidopsis thaliana
Length = 170
Score = 130 bits (328), Expect = 3e-29
Identities = 78/158 (49%), Positives = 101/158 (63%), Gaps = 17/158 (10%)
Query: 1 MAGITSTTVVPVKLKASHFFSNKLSIPHSLNLQSSPSFTLPSHA-TVRYGVNLRPSAYGG 59
+AG T T PVK K F +L +P + SP A T RYG GG
Sbjct: 14 LAGATKTVSHPVKSK---LFGLRLCVPEFSIVSLSPYHHRRCPAITCRYG--------GG 62
Query: 60 GGNFRRAPPE-----KDADDGQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAE 114
GG R P + K+++D +LD+S + S TVRLID QNM+G+VS ++A+R AEDAE
Sbjct: 63 GGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLIDDQQNMIGLVSKEEAVRRAEDAE 122
Query: 115 LDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQQKKS 152
LDLVI+S +ADPPVVR+M+YSKYRYE QK+K++QQKKS
Sbjct: 123 LDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKKS 160
>ref|NP_440210.1| initiation factor IF-3 [Synechocystis sp. PCC 6803]
gi|1651964|dbj|BAA16890.1| initiation factor IF-3
[Synechocystis sp. PCC 6803]
gi|2497285|sp|P72874|IF3_SYNY3 Translation initiation
factor IF-3
Length = 177
Score = 128 bits (322), Expect = 1e-28
Identities = 66/156 (42%), Positives = 102/156 (65%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R+ID +G+++ ++A+ +A++ LDLV+VS ADPPV RIM+Y KY++E +KK R+
Sbjct: 23 IRVIDSDGAQLGIITPNEAMEIADERGLDLVLVSETADPPVCRIMDYGKYKFEQEKKARE 82
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK + D+KE+KM Y ID+HDY VR+ A++FL GDKVK VN +GRE + + A
Sbjct: 83 AKKKQHTA--DVKEVKMRYKIDEHDYQVRINQAKRFLKAGDKVKATVNFRGREIQHAHLA 140
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
EL+ R D+ A ++A +N+ + L P K
Sbjct: 141 KELLDRMATDLATEADIQQAPKREGRNMMMFLSPKK 176
>ref|YP_172148.1| translation initiation factor IF-3 [Synechococcus elongatus PCC
6301] gi|56686406|dbj|BAD79628.1| translation initiation
factor IF-3 [Synechococcus elongatus PCC 6301]
gi|53763212|ref|ZP_00163821.2| COG0290: Translation
initiation factor 3 (IF-3) [Synechococcus elongatus PCC
7942]
Length = 184
Score = 127 bits (319), Expect = 3e-28
Identities = 63/156 (40%), Positives = 105/156 (66%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
+R++D +G+++ +A+R+AE+ ELDLV+VS +ADPPV RIM+Y KY++E +K+ R+
Sbjct: 28 IRVVDTDGAQLGILTPAEALRIAEEKELDLVLVSDKADPPVCRIMDYGKYKFEQEKRARE 87
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK +++KE+KM Y ID+HDY VR+ A++FL GDKVK + +GRE + + A
Sbjct: 88 ARKKQ--HNVEVKEVKMRYKIDEHDYQVRVNQAQRFLKAGDKVKATITFRGREIQHTDLA 145
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
+L+ R +D+ +L ++A +N+ + L P K
Sbjct: 146 QQLLMRLASDLKELGEVQQAPKKEGRNMMMMLGPKK 181
>ref|ZP_00268467.1| COG0290: Translation initiation factor 3 (IF-3) [Rhodospirillum
rubrum]
Length = 173
Score = 127 bits (318), Expect = 4e-28
Identities = 68/177 (38%), Positives = 108/177 (60%), Gaps = 7/177 (3%)
Query: 65 RAPPEKDADDGQALDLSTLSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEA 124
+APP KD + VRLID++ + VGVVS A+ AE A LDLV +S A
Sbjct: 2 QAPPSKDGPRANR----EIRIPEVRLIDENGDNVGVVSTRDALARAEAAGLDLVEISPNA 57
Query: 125 DPPVVRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFL 184
+PPV +I++ K++YE QKKK + +KK +++KE+K+ NID+HDY V+++AA++FL
Sbjct: 58 EPPVCKILDLGKFKYEAQKKKNEAKKKQKV--IEIKEIKLRPNIDEHDYDVKMRAAKRFL 115
Query: 185 SDGDKVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIP 240
+GDKVKV + +GRE ++ + +++R DV LA E+ + + + + P
Sbjct: 116 EEGDKVKVTMRFRGREMAHQDLGMNVLKRVSEDVADLAKVEQHPKLEGRQMIMVMAP 172
>ref|NP_682410.1| translation initiation factor IF-3 [Thermosynechococcus elongatus
BP-1] gi|29427442|sp|Q8DIG8|IF3_SYNEL Translation
initiation factor IF-3 gi|22295345|dbj|BAC09172.1|
translation initiation factor IF-3 [Thermosynechococcus
elongatus BP-1]
Length = 182
Score = 127 bits (318), Expect = 4e-28
Identities = 65/156 (41%), Positives = 103/156 (65%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
VR++D + +G++S +AI +A + ELDLV+VS +ADPPV +I++Y K+R+E +KK R+
Sbjct: 29 VRVVDTDGSQLGIMSSQEAIAIAREKELDLVLVSDKADPPVCKIIDYGKFRFEQEKKARE 88
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK S D+KE+KM Y I++HDY+V + A +FL GDKVK V +GRE + + A
Sbjct: 89 ARKKQHTS--DVKEVKMRYKIEEHDYNVCINRAERFLKAGDKVKATVTFRGREIQHSHLA 146
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
EL+ R ND+ +A ++A +N+ + L P +
Sbjct: 147 EELLNRMANDLQAVAEVQQAPKQEGRNMIMFLAPKR 182
>ref|NP_623290.1| Translation initiation factor IF3 [Thermoanaerobacter tengcongensis
MB4] gi|20516706|gb|AAM24894.1| Translation initiation
factor IF3 [Thermoanaerobacter tengcongensis MB4]
gi|22095768|sp|Q8R9C2|IF3_THETN Translation initiation
factor IF-3
Length = 180
Score = 126 bits (316), Expect = 7e-28
Identities = 61/156 (39%), Positives = 104/156 (66%), Gaps = 3/156 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
VRLIDQ +G++S +A ++A++ LDLV + A+PPV ++M++ KYRYEL K++++
Sbjct: 26 VRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELSKREKE 85
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
+KK +++KE++M NI+ HD+ V+LK+A KFL DGDKVKV + +GRE + A
Sbjct: 86 AKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAAHTSLA 143
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNK 242
+L++RF ++ + E+A + +N+ + + P K
Sbjct: 144 EDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179
>pir||A54391 translation initiation factor IF-3 precursor, chloroplast - Euglena
gracilis gi|547710|sp|P36177|IF3C_EUGGR Translation
initiation factor IF-3, chloroplast precursor (IF-3chl)
gi|475786|gb|AAA20996.1| chloroplast initiation factor 3
Length = 538
Score = 126 bits (316), Expect = 7e-28
Identities = 85/256 (33%), Positives = 136/256 (52%), Gaps = 31/256 (12%)
Query: 32 LQSSPSFTLPSHATVRYGVNL-RPSAYGGG-GNFRRAPPEKDADDGQAL----------- 78
L+ SPS TL S+ + G+ L + +G G G R P E++ ++ Q +
Sbjct: 242 LRGSPSSTL-SNLGMGLGLGLGKGKGFGKGFGKGRGFPVEEEVEEEQEVLSWADRRRALA 300
Query: 79 ---------DLSTLSSNTVRLIDQSQN-MVGVVSLDQAIRMAEDAELDLVIVSAEADPPV 128
D+ VR + ++ +GV+S +A+ +AE ++DLV+VS + DPPV
Sbjct: 301 DPDAPPMNEDIKYPQLRLVRAVPGGRDEKLGVMSRQEALELAEAEDIDLVLVSIDTDPPV 360
Query: 129 VRIMNYSKYRYELQKKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGD 188
+++NYSK +YE +KKK+D KK ++KELK+ + I QHDY VR+K ARKFL G
Sbjct: 361 AKLVNYSKLKYESEKKKKDSHKKGKVK--EVKELKVSHKIGQHDYDVRVKQARKFLEGGH 418
Query: 189 KVKVIVNLKGREKEFRNNAIELIRRFQNDVGKLATEEAKNFR-DKNIFITLIPN----KT 243
++KV + KGRE +F +++RFQND+ + +A + + + L P K
Sbjct: 419 RIKVSMEFKGRENQFVEIGRAVMKRFQNDLADMGKADAVPKKLGTRLILNLAPAGEALKV 478
Query: 244 EVQKPQETPTKAATDE 259
++ E KAA +E
Sbjct: 479 IAERRAERDRKAAAEE 494
>sp|Q9MS97|IF3C_GALSU Translation initiation factor IF-3, chloroplast
gi|8925953|gb|AAF81685.1| translation initiation factor
IF-3 [Galdieria sulphuraria]
Length = 181
Score = 125 bits (315), Expect = 9e-28
Identities = 63/162 (38%), Positives = 108/162 (65%), Gaps = 3/162 (1%)
Query: 83 LSSNTVRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQ 142
+S VR+ID++ +G+ ++ A+++AE+ LDLV+++ + +PPVVRI++Y K+++ +
Sbjct: 22 ISFPIVRIIDENNYQLGIYKIEDALKLAEEKNLDLVLINDKTEPPVVRIIDYGKFKFAQE 81
Query: 143 KKKRDQQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKE 202
KK R+ +KK ++ +KE+KM Y I+ HDY VR+ A KFL G+KVK+ + KGRE +
Sbjct: 82 KKSREAKKKQ--HQVTVKEIKMRYKIEDHDYQVRINQAIKFLKLGNKVKISLTFKGREIQ 139
Query: 203 FRNNAIELIRRFQNDVGKLAT-EEAKNFRDKNIFITLIPNKT 243
+ + A +LI + + + LA E+ + KNI+I L+P KT
Sbjct: 140 YIDLAEKLIEKIIHSLSSLAEHEKVFDKEGKNIYIMLLPKKT 181
>ref|ZP_00327477.1| COG0290: Translation initiation factor 3 (IF-3) [Trichodesmium
erythraeum IMS101]
Length = 178
Score = 125 bits (313), Expect = 2e-27
Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 3/157 (1%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
VR +D +G+V +A+RMA++ LDLV+VS +ADPPV RI++Y KY +E +KK +D
Sbjct: 23 VRAVDADGQQLGIVETREALRMAQEKGLDLVMVSDKADPPVCRIIDYGKYLFEQKKKVQD 82
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
++K ++KE+KM Y I++HDY+VRL A++FL GDKVK + +GRE + N A
Sbjct: 83 AKRKQ--HNAEVKEVKMRYKIEEHDYNVRLSHAKRFLESGDKVKATIMFRGREIQHSNLA 140
Query: 208 IELIRRFQNDVGKLA-TEEAKNFRDKNIFITLIPNKT 243
EL++R D+ LA ++A +++ + L P K+
Sbjct: 141 EELLQRMATDLKDLAEIQQAPKKEGRSMMMLLSPKKS 177
>ref|NP_214219.1| initiation factor IF-3 [Aquifex aeolicus VF5]
gi|2984082|gb|AAC07621.1| initiation factor IF-3
[Aquifex aeolicus VF5] gi|7443490|pir||C70453
translation initiation factor IF-3 - Aquifex aeolicus
gi|6016323|sp|O67653|IF3_AQUAE Translation initiation
factor IF-3
Length = 175
Score = 125 bits (313), Expect = 2e-27
Identities = 58/154 (37%), Positives = 103/154 (66%)
Query: 89 RLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRDQ 148
RLID++ +G+V +++A+++AE+ LDLV ++ +A PPV +IM+Y K++YEL+KK+R+
Sbjct: 19 RLIDENGQQIGIVPIEEALKIAEEKGLDLVEIAPQAKPPVCKIMDYGKFKYELKKKEREA 78
Query: 149 QKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNAI 208
+KK ++++K+++M ID+HD V+LK R+FL +GDKVKV + +GRE +
Sbjct: 79 RKKQREHQIEVKDIRMKVRIDEHDLQVKLKHMREFLEEGDKVKVWLRFRGRENIYPELGK 138
Query: 209 ELIRRFQNDVGKLATEEAKNFRDKNIFITLIPNK 242
+L R N++ +A E + ++ N I ++ K
Sbjct: 139 KLAERIINELSDIAEVEVQPKKEGNFMIFVLAPK 172
>ref|ZP_00132061.2| COG0290: Translation initiation factor 3 (IF-3) [Haemophilus somnus
2336]
Length = 159
Score = 124 bits (312), Expect = 2e-27
Identities = 64/157 (40%), Positives = 96/157 (60%), Gaps = 4/157 (2%)
Query: 88 VRLIDQSQNMVGVVSLDQAIRMAEDAELDLVIVSAEADPPVVRIMNYSKYRYELQKKKRD 147
VRLIDQ VG+VS+ QA+ MAE A+LDLV +S A+PPV RIMNY K+ YE K ++
Sbjct: 4 VRLIDQDGEQVGIVSIQQALNMAEQADLDLVEISPNAEPPVCRIMNYGKFLYEKGKAAKE 63
Query: 148 QQKKSAASRMDLKELKMGYNIDQHDYSVRLKAARKFLSDGDKVKVIVNLKGREKEFRNNA 207
Q+KK + +KE+K D+ DY V+L++ +FL DGDK K+ V +GRE ++
Sbjct: 64 QKKKQKV--VQVKEIKFRPGTDEGDYQVKLRSLIRFLEDGDKAKITVRFRGREMAHQDIG 121
Query: 208 IELIRRFQNDVGKLATEEAK--NFRDKNIFITLIPNK 242
++++ R +ND+ +A E+ + + L P K
Sbjct: 122 LDMLERVKNDLADIAVVESAPGKLEGRQAIMVLAPKK 158
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.313 0.130 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,691,312
Number of Sequences: 2540612
Number of extensions: 16965624
Number of successful extensions: 47488
Number of sequences better than 10.0: 390
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 46833
Number of HSP's gapped (non-prelim): 405
length of query: 266
length of database: 863,360,394
effective HSP length: 126
effective length of query: 140
effective length of database: 543,243,282
effective search space: 76054059480
effective search space used: 76054059480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 74 (33.1 bits)
Medicago: description of AC140546.3