BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140068.13 + phase: 0
(233 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis ... 351 1e-95
pir||S34448 small nuclear ribonucleoprotein U2B'' - potato gi|16... 350 2e-95
ref|NP_172177.3| small nuclear ribonucleoprotein U2B, putative /... 349 3e-95
gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis ... 346 3e-94
gb|AAF82223.1| Strong similarity to a small nuclear ribonucleopr... 342 6e-93
gb|AAO23633.1| At2g30260 [Arabidopsis thaliana] gi|2347192|gb|AA... 340 2e-92
gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Ara... 335 5e-91
emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum... 283 4e-75
ref|NP_910157.1| putative small nuclear ribonucleoprotein U1A [O... 263 2e-69
emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana] ... 256 5e-67
ref|NP_067310.1| U2 small nuclear ribonucleoprotein B [Mus muscu... 242 7e-63
dbj|BAB28565.1| unnamed protein product [Mus musculus] 240 2e-62
ref|XP_534338.1| PREDICTED: similar to U2 small nuclear ribonucl... 240 3e-62
ref|XP_342529.1| PREDICTED: similar to hypothetical protein [Rat... 239 6e-62
emb|CAH93023.1| hypothetical protein [Pongo pygmaeus] 238 1e-61
emb|CAB38777.2| SNRPB2 [Homo sapiens] gi|22477822|gb|AAH36737.1|... 238 1e-61
emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis] 235 7e-61
ref|XP_419331.1| PREDICTED: similar to U2 small nuclear ribonucl... 235 9e-61
gb|AAH59527.1| LOC402896 protein [Danio rerio] 234 1e-60
ref|XP_536409.1| PREDICTED: similar to U2 small nuclear ribonucl... 233 2e-60
>gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
gi|30679892|ref|NP_850936.1| small nuclear
ribonucleoprotein U2B, putative / spliceosomal protein,
putative [Arabidopsis thaliana]
Length = 229
Score = 351 bits (900), Expect = 1e-95
Identities = 169/233 (72%), Positives = 202/233 (86%), Gaps = 4/233 (1%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYIK++NEKIKK+ELKRSLYCLFSQ+GR+LD++ALKTPKLRGQAWV F+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGSFVP+EKK KQEEK E+K++A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
+E++Q ++PNG T NG F+P Q+ PNNILFI NLP ET ML++LFE
Sbjct: 121 EETQQPSMPNGAT--TQNGMPVPPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFE 176
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
QYPGFKE+R+IEAKPGIAFV++EDD QSSMAMQALQGFKITPQNPM+++FAKK
Sbjct: 177 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>pir||S34448 small nuclear ribonucleoprotein U2B'' - potato
gi|169589|gb|AAA33847.1| spliceosomal protein
Length = 231
Score = 350 bits (898), Expect = 2e-95
Identities = 175/234 (74%), Positives = 203/234 (85%), Gaps = 5/234 (2%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+GDIPPNQTIYIKNLNEK+KK+ELKRSLYCLFSQYGRI+DI+ALKTPKLRGQ+WV FS
Sbjct: 2 MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFS 61
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDCIAK EG++ +KKKKQ+EK EK+K
Sbjct: 62 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTY---DKKKKQDEKVEKRKRT 118
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGS-GAQEAAAPNNILFIENLPYETTGRMLEMLF 179
+E+ Q+ N G SNGG A+ R G AQ+ A PNNILFI+NLP+ETT MLE+LF
Sbjct: 119 EETPQTGAAN-GPRTDSNGGPAAASRQGKPSAQDVAEPNNILFIQNLPHETTSMMLEVLF 177
Query: 180 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
+QYPGF+EVR+IEAKPGIAFV+F+DD QSS+AMQALQGFKITPQNPM I +AKK
Sbjct: 178 KQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>ref|NP_172177.3| small nuclear ribonucleoprotein U2B, putative / spliceosomal
protein, putative [Arabidopsis thaliana]
Length = 228
Score = 349 bits (896), Expect = 3e-95
Identities = 168/233 (72%), Positives = 202/233 (86%), Gaps = 5/233 (2%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYIK++NEKIKK+ELKRSLYCLFSQ+GR+LD++ALKTPKLRGQAWV F+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGSFVP+EKK KQEEK E+K++A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
+E++Q ++PNG T + G F+P Q+ PNNILFI NLP ET ML++LFE
Sbjct: 121 EETQQPSMPNGAT---TQNGMPPPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFE 175
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
QYPGFKE+R+IEAKPGIAFV++EDD QSSMAMQALQGFKITPQNPM+++FAKK
Sbjct: 176 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 228
Score = 346 bits (887), Expect = 3e-94
Identities = 166/233 (71%), Positives = 202/233 (86%), Gaps = 5/233 (2%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYIK+++EKIKK+ELKRSLYCLFSQ+GR+LD++ALKTPKLRGQAWV F+
Sbjct: 1 MLTADIPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGSFVP+EKK KQEEK E+K++A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
+E++Q ++PNG T + G F+P Q+ PNNILFI NLP ET ML++LFE
Sbjct: 121 EETQQPSMPNGAT---TQNGMPPPFQP--SGQDTMPPNNILFIHNLPIETNSMMLQLLFE 175
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
QYPGFKE+R+IEAKPGIAFV++EDD QSSMAMQALQGFKITP+NPM+++FAKK
Sbjct: 176 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNPMVVSFAKK 228
>gb|AAF82223.1| Strong similarity to a small nuclear ribonucleoprotein U2B'' -
potato from Solanum tuberosum gb|M72892. It contains an
RNA recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene. [Arabidopsis thaliana]
gi|25294325|pir||C86204 hypothetical protein [imported]
- Arabidopsis thaliana
Length = 247
Score = 342 bits (876), Expect = 6e-93
Identities = 170/251 (67%), Positives = 203/251 (80%), Gaps = 22/251 (8%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYIK++NEKIKK+ELKRSLYCLFSQ+GR+LD++ALKTPKLRGQAWV F+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSD + K EGSFVP+EKK KQEEK E+K++A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 DESKQSAVPNGGTHGASNGGSTA------------------SFRPGSGAQEAAAPNNILF 162
+E++Q ++PNG T NG A F+P Q+ PNNILF
Sbjct: 121 EETQQPSMPNGAT--TQNGMPVAISLSRIIPTIQYYLLTDPPFQP--SGQDTMPPNNILF 176
Query: 163 IENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITP 222
I NLP ET ML++LFEQYPGFKE+R+IEAKPGIAFV++EDD QSSMAMQALQGFKITP
Sbjct: 177 IHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITP 236
Query: 223 QNPMIINFAKK 233
QNPM+++FAKK
Sbjct: 237 QNPMVVSFAKK 247
>gb|AAO23633.1| At2g30260 [Arabidopsis thaliana] gi|2347192|gb|AAC16931.1| putative
small nuclear ribonucleoprotein U2B [Arabidopsis
thaliana] gi|15227729|ref|NP_180585.1| small nuclear
ribonucleoprotein U2B, putative / spliceosomal protein,
putative [Arabidopsis thaliana] gi|25294326|pir||C84706
probable small nuclear ribonucleoprotein U2B [imported]
- Arabidopsis thaliana
Length = 232
Score = 340 bits (871), Expect = 2e-92
Identities = 164/234 (70%), Positives = 200/234 (85%), Gaps = 3/234 (1%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPNQ+IYI+NLNE+IKK+ELKRSLYCLFSQ+GRILD++ALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAA +AVRQMQNFPFY+KPMR+QYAK KSDC+AK EG+FVP++KK+KQEEK E+K+
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120
Query: 121 DESKQSA-VPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLF 179
+ +A P+ A+NG SF+P QE PNNILFI+NLP+ETT ML++LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQP--SGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 180 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
EQYPGFKE+R+I+AKPGIAFV++EDD Q+S+AMQ LQGFKITPQNPM+I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 335 bits (860), Expect = 5e-91
Identities = 162/234 (69%), Positives = 198/234 (84%), Gaps = 3/234 (1%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
ML+ DIPPN +IYI+NLNE+IKK+ELKRSLYCLFSQ+GRILD++ALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
EVTAA +AVRQMQNFP Y+KPMR+QYAK KSDC+AK EG+FVP++KK+KQEEK E+K+
Sbjct: 61 EVTAAGHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKREE 120
Query: 121 DESKQSA-VPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLF 179
+ +A P+ A+NG SF+P QE PNNILFI+NLP+ETT ML++LF
Sbjct: 121 SQRPNTANGPSANGPSANNGVPAPSFQP--SGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 180 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
EQYPGFKE+R+I+AKPGIAFV++EDD Q+S+AMQ LQGFKITPQNPM+I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
gi|2119045|pir||S59117 small nuclear ribonucleoprotein
U1A - potato
Length = 253
Score = 283 bits (723), Expect = 4e-75
Identities = 139/237 (58%), Positives = 186/237 (77%), Gaps = 7/237 (2%)
Query: 4 GDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVT 63
G+ PPN TIYI NLNEKIK +ELK+S++ +FSQ+G+IL+++A KT K +GQAWV F EV+
Sbjct: 17 GETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 76
Query: 64 AASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADES 123
+ASNA+RQMQ FPFY+KPMRIQYAKTKSD +AK +G+FVPREK+K+ E+K KKK +S
Sbjct: 77 SASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDS 136
Query: 124 KQSAV----PNGGTHGASNGGSTASFRPGSGA---QEAAAPNNILFIENLPYETTGRMLE 176
Q+ + G +GA+ S + G+ A + A PN+ILF++NLP+++T ML+
Sbjct: 137 NQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMMLQ 196
Query: 177 MLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
MLF QYPGFKEVR+IEAKPGIAF+++ D+ QS++AMQALQGFKIT +NPM+I +AKK
Sbjct: 197 MLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
>ref|NP_910157.1| putative small nuclear ribonucleoprotein U1A [Oryza sativa]
Length = 253
Score = 263 bits (673), Expect = 2e-69
Identities = 133/234 (56%), Positives = 174/234 (73%), Gaps = 7/234 (2%)
Query: 7 PPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTAAS 66
PPN TIYI NLNEKIK +ELK+SL +FSQ+G+ILD++A KT K +GQAWV F +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESKQS 126
A++ MQ+FPF+ KPMRIQYAKTKSD IAK +G+FVPRE++K+ +EK EKK+ ++
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 AVPNGGTHGASN--GGSTASFRPGSGAQ-----EAAAPNNILFIENLPYETTGRMLEMLF 179
+ G + G S P +GAQ E PNNILF++NLP+ETT ML+MLF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199
Query: 180 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
QYPGFKEVR++EAKPGIAFV++ D+GQ++ AM LQGFKIT N M+I++AKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana]
gi|22655484|gb|AAM98334.1| At2g47580/T30B22.12
[Arabidopsis thaliana] gi|20259986|gb|AAM13340.1| small
nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|2529669|gb|AAC62852.1| small nuclear
ribonucleoprotein U1A [Arabidopsis thaliana]
gi|16649011|gb|AAL24357.1| small nuclear
ribonucleoprotein U1A [Arabidopsis thaliana]
gi|15450591|gb|AAK96567.1| At2g47580/T30B22.12
[Arabidopsis thaliana] gi|2119046|pir||S59118 small
nuclear ribonucleoprotein U1A [imported] - Arabidopsis
thaliana gi|15226631|ref|NP_182280.1| small nuclear
ribonucleoprotein U1A / spliceosomal protein U1A /
U1snRNP-specific protein [Arabidopsis thaliana]
Length = 250
Score = 256 bits (653), Expect = 5e-67
Identities = 136/239 (56%), Positives = 174/239 (71%), Gaps = 11/239 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
++ PNQTIYI NLNEK+K DELK+SL +FSQ+G+IL+I+A KT K +GQAWV F +
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYAD--- 121
AS A+ +M NFPFY+K MRIQYAKTKSD +AK +G+FVPREK+K+ EEK KK D
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132
Query: 122 ESKQSAVPNG----GTHGASNGGSTASFRPG---SGAQEAAAPNNILFIENLPYETTGRM 174
+S Q +P G +GA+ S + G + + A PNNILF++NLP+ETT +
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 175 LEMLFEQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
L+MLF QY GFKEVR+IEAKPGIAFV+F D+ QS++AMQ LQGFKI QN M+I +AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
>ref|NP_067310.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear
ribonucleoprotein B [Mus musculus]
gi|52783420|sp|Q9CQI7|RU2B_MOUSE U2 small nuclear
ribonucleoprotein B" gi|12851400|dbj|BAB29026.1| unnamed
protein product [Mus musculus]
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus
musculus]
Length = 225
Score = 242 bits (617), Expect = 7e-63
Identities = 128/229 (55%), Positives = 160/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAA 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT A+N TA+ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 ANKKPGQGTPNAANTQGTAAPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 240 bits (613), Expect = 2e-62
Identities = 128/229 (55%), Positives = 159/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAA 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT A+N TA+ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 ANKKPGQGTPNAANTQGTAAPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>ref|XP_534338.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Canis
familiaris]
Length = 969
Score = 240 bits (612), Expect = 3e-62
Identities = 127/229 (55%), Positives = 159/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 746 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 805
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 806 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTVEQTATT 863
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
S P GT A+N ++ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 864 ASKKPGQGTPNAANTQGNSTPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 920
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 921 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 969
>ref|XP_342529.1| PREDICTED: similar to hypothetical protein [Rattus norvegicus]
Length = 225
Score = 239 bits (609), Expect = 6e-62
Identities = 126/229 (55%), Positives = 159/229 (69%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTMEQAAAA 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT ++N A+ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 ANKKPGQGTPNSANTQGNAAPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>emb|CAH93023.1| hypothetical protein [Pongo pygmaeus]
Length = 225
Score = 238 bits (607), Expect = 1e-61
Identities = 125/229 (54%), Positives = 160/229 (69%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +K+KK+E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFA--DKEKKREKKKAKTVEQTATT 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
S P GT ++N ++ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 TSKKPGQGTPNSANTQGNSTPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>emb|CAB38777.2| SNRPB2 [Homo sapiens] gi|22477822|gb|AAH36737.1| Small nuclear
ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear
ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|134095|sp|P08579|RU2B_HUMAN U2 small nuclear
ribonucleoprotein B" gi|340105|gb|AAA36796.1| U2 small
nuclear ribonucleoprotein B''
gi|38149981|ref|NP_937863.1| small nuclear
ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|4507123|ref|NP_003083.1| small nuclear
ribonucleoprotein polypeptide B'' [Homo sapiens]
Length = 225
Score = 238 bits (606), Expect = 1e-61
Identities = 125/229 (54%), Positives = 159/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKK--EKKKAKTVEQTATT 119
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT ++N ++ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 120 TNKKPGQGTPNSANTQGNSTPNP---QVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPG 176
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 177 FKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 235 bits (600), Expect = 7e-61
Identities = 126/229 (55%), Positives = 161/229 (70%), Gaps = 12/229 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+K+KK+ELKRSLY L SQ+G+I+DI+A+KT K+RGQA+V F E+TA
Sbjct: 2 DIRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTA 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
A+NA+RQ+Q FPFY KPMRIQYAKT S+ IAK +G++ +EKKKK+++KA++ K
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKAQELPANQMKK 121
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ VP H S A+ P + PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 122 AAVVPAVPLH------SPAAQVPDN------PPNYILFLTNLPEETNEMMLSMLFNQFPG 169
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEVRL+ K IAFV+FE D Q+ +A ALQGF+IT M I FAKK
Sbjct: 170 FKEVRLVPGKHDIAFVEFESDLQAGVAKDALQGFRITATCAMKITFAKK 218
>ref|XP_419331.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Gallus
gallus]
Length = 226
Score = 235 bits (599), Expect = 9e-61
Identities = 121/233 (51%), Positives = 165/233 (69%), Gaps = 12/233 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EK+K++++ ++ A+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNN----ILFIENLPYETTGRMLEMLFE 180
+ + GA+ ++A PG+ Q P+N ILF+ NLP ET ML MLF
Sbjct: 122 KKII-----QGATQNSTSA---PGTSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFN 173
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
Q+PGFKEVRL+ + IAFV+FE++ Q+ A ALQGFKITP + M I +AKK
Sbjct: 174 QFPGFKEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>gb|AAH59527.1| LOC402896 protein [Danio rerio]
Length = 229
Score = 234 bits (597), Expect = 1e-60
Identities = 124/233 (53%), Positives = 166/233 (71%), Gaps = 10/233 (4%)
Query: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
+L DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G+I+DI+ALKT ++RGQA+V F
Sbjct: 7 LLIMDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFK 66
Query: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
E++AA+NA+RQ+Q FPFY KPMRIQYAKT SD ++K G++ +EKKK++++KA+++ A
Sbjct: 67 ELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTYGDKEKKKEKKKKAQEQAAA 126
Query: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
+ +K+ A GA N T P + PN ILF+ NLP ET ML MLF
Sbjct: 127 NANKKPA-------GAVN---TQPPPPATVQIPDNPPNYILFLNNLPEETNEMMLSMLFN 176
Query: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
Q+PGFKEVRL+ K I+FV+FE + Q+ +A ALQGF+IT M I +AKK
Sbjct: 177 QFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>ref|XP_536409.1| PREDICTED: similar to U2 small nuclear ribonucleoprotein B [Canis
familiaris]
Length = 384
Score = 233 bits (595), Expect = 2e-60
Identities = 125/229 (54%), Positives = 158/229 (68%), Gaps = 5/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G ++DI+ALKT K+RGQA+V F E+ +
Sbjct: 161 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 220
Query: 65 ASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYADESK 124
++NA+RQ+Q FPFY KPMRIQYAKT SD I+K G+F +EKKK E+K K +
Sbjct: 221 STNALRQLQGFPFYGKPMRIQYAKTHSDIISKMCGAFADKEKKK--EKKKAKTVEQTATT 278
Query: 125 QSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFEQYPG 184
+ P GT A+N ++ P PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 279 ANKKPGQGTPNAANTQGNSTPNP---QVPDYPPNYILFLNNLPEETNKMMLSMLFNQFPG 335
Query: 185 FKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
FKEV L+ + IAFV+FE+DGQ+ A ALQGFKITP + M I +AKK
Sbjct: 336 FKEVCLVPGRHDIAFVEFENDGQAGAAGDALQGFKITPSHAMKITYAKK 384
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.133 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,307,473
Number of Sequences: 2540612
Number of extensions: 16791964
Number of successful extensions: 125366
Number of sequences better than 10.0: 1642
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 1358
Number of HSP's that attempted gapping in prelim test: 122721
Number of HSP's gapped (non-prelim): 3131
length of query: 233
length of database: 863,360,394
effective HSP length: 124
effective length of query: 109
effective length of database: 548,324,506
effective search space: 59767371154
effective search space used: 59767371154
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 73 (32.7 bits)
Medicago: description of AC140068.13