BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140030.9 - phase: 0 /pseudo
(113 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAU90317.1| putative TPR domain containing protein [Solanum d... 139 2e-32
gb|AAW28574.1| putative TPR domain containing protein [Solanum d... 138 4e-32
ref|NP_173998.1| SET domain-containing protein [Arabidopsis thal... 132 2e-30
pir||C86394 protein T24P13.14 [imported] - Arabidopsis thaliana ... 132 2e-30
ref|XP_470290.1| hypothetical protein [Oryza sativa (japonica cu... 96 3e-19
gb|AAT66763.1| putative TPR domain containing protein [Solanum d... 67 8e-11
ref|NP_623955.1| hypothetical protein TTE2423 [Thermoanaerobacte... 32 2.8
ref|XP_420015.1| PREDICTED: similar to cochlear otoferlin [Gallu... 32 2.8
ref|XP_575930.1| PREDICTED: similar to 2810043G13Rik protein [Ra... 32 4.8
ref|XP_543331.1| PREDICTED: similar to serine/threonine kinase 2... 32 4.8
ref|ZP_00263673.1| COG2603: Predicted ATPase [Pseudomonas fluore... 31 6.3
sp|P08696|BCN5_CLOPE Bacteriocin BCN5 gi|9507358|ref|NP_040451.1... 31 6.3
pir||FOMSIE retrovirus-related gag polyprotein - mouse intracist... 31 8.2
ref|YP_111401.1| hypothetical protein BPSS1389 [Burkholderia pse... 31 8.2
ref|NP_344411.1| hypothetical protein SSO3097 [Sulfolobus solfat... 31 8.2
>gb|AAU90317.1| putative TPR domain containing protein [Solanum demissum]
Length = 536
Score = 139 bits (349), Expect = 2e-32
Identities = 61/107 (57%), Positives = 81/107 (75%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHR 60
E M+RW VRGK KGYLR+SFW +YSE Y SER ++RWG ++P +D V+DS+ + VG D R
Sbjct: 425 ENMRRWMVRGKGKGYLRSSFWRVYSEVYESERLLRRWGSKVPLMDNVLDSVVNAVGSDER 484
Query: 61 VLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLL 107
++K+LM LKRK G G G +EMEK KL R +YGK++KKQ +RT+L
Sbjct: 485 IVKLLMRGLKRKNGHKGNGIVEMEKAMKLGRGLYGKIMKKQTLRTIL 531
>gb|AAW28574.1| putative TPR domain containing protein [Solanum demissum]
Length = 536
Score = 138 bits (347), Expect = 4e-32
Identities = 60/107 (56%), Positives = 81/107 (75%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHR 60
E M+RW VRGK KGYLR+SFW +YSE Y SER +++WG ++P ++ V+DS+ D VG D R
Sbjct: 425 ENMRRWMVRGKGKGYLRSSFWRVYSEVYESERSLRKWGSKVPLMENVLDSVVDAVGSDER 484
Query: 61 VLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLL 107
++K+LM LKRK G G G +EMEK KL R +YGK++KKQ +RT+L
Sbjct: 485 IVKLLMRGLKRKNGHKGNGIVEMEKAMKLGRGLYGKIMKKQTLRTIL 531
>ref|NP_173998.1| SET domain-containing protein [Arabidopsis thaliana]
Length = 967
Score = 132 bits (332), Expect = 2e-30
Identities = 64/108 (59%), Positives = 84/108 (77%), Gaps = 2/108 (1%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHR 60
E MKRWKV+GK+KG LRAS+W +Y E Y SER MKRWGR+IP ++ VVDS++DVVG D R
Sbjct: 858 EGMKRWKVKGKDKGLLRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDSVSDVVGSDER 917
Query: 61 VLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVV-KKQAMRTLL 107
++K+ +E + +K GG +EMEK+ KL + VYGKVV KK+AM+TLL
Sbjct: 918 LMKMAVEGMMKKHGGF-SNIVEMEKIMKLGKGVYGKVVSKKKAMKTLL 964
>pir||C86394 protein T24P13.14 [imported] - Arabidopsis thaliana
gi|9295736|gb|AAF87042.1| T24P13.14 [Arabidopsis
thaliana]
Length = 969
Score = 132 bits (332), Expect = 2e-30
Identities = 64/108 (59%), Positives = 84/108 (77%), Gaps = 2/108 (1%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHR 60
E MKRWKV+GK+KG LRAS+W +Y E Y SER MKRWGR+IP ++ VVDS++DVVG D R
Sbjct: 860 EGMKRWKVKGKDKGLLRASYWGVYDEIYNSERLMKRWGRKIPTMEVVVDSVSDVVGSDER 919
Query: 61 VLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVV-KKQAMRTLL 107
++K+ +E + +K GG +EMEK+ KL + VYGKVV KK+AM+TLL
Sbjct: 920 LMKMAVEGMMKKHGGF-SNIVEMEKIMKLGKGVYGKVVSKKKAMKTLL 966
>ref|XP_470290.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|19071649|gb|AAL84316.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 536
Score = 95.5 bits (236), Expect = 3e-19
Identities = 49/115 (42%), Positives = 76/115 (65%), Gaps = 5/115 (4%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHR 60
E+M++ V+ + K +LRASFWS YS + S++ +++WGRR+P AV +S+ +GG+
Sbjct: 419 ERMRKSMVKERRKAFLRASFWSAYSALFDSDKLVRKWGRRVPGEAAVAESVAGAIGGNES 478
Query: 61 VLKILMEELKRKGGGSGGGN-LEME-KVFKLAREVYGKVVKKQAMRTLLELCIAA 113
VL+ + L+ G+G GN LE+E KV ++ R YG+VVK+QAMR L L + A
Sbjct: 479 VLRAM---LRGADNGNGCGNRLEVEDKVVRIGRATYGRVVKRQAMRALFRLTLDA 530
>gb|AAT66763.1| putative TPR domain containing protein [Solanum demissum]
Length = 438
Score = 67.4 bits (163), Expect = 8e-11
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 1 EQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPAL 44
E M+RW VRGK KGYLR+SFW +YSE Y SER +++WG ++P +
Sbjct: 388 ENMRRWMVRGKGKGYLRSSFWRVYSEVYESERSLRKWGSKVPLM 431
>ref|NP_623955.1| hypothetical protein TTE2423 [Thermoanaerobacter tengcongensis MB4]
gi|20517431|gb|AAM25559.1| hypothetical protein TTE2423
[Thermoanaerobacter tengcongensis MB4]
Length = 112
Score = 32.3 bits (72), Expect = 2.8
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 13/67 (19%)
Query: 58 DHRVLKILMEELKR-------------KGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMR 104
D+ KI ME+LKR + GSG G ++ E+VFKL ++V G + + +
Sbjct: 26 DYLSTKIGMEKLKRYYEIAKAFVQAVEQQVGSGNGPIKKEQVFKLLKKVIGNKLTDEEID 85
Query: 105 TLLELCI 111
L+E +
Sbjct: 86 KLIEAAV 92
>ref|XP_420015.1| PREDICTED: similar to cochlear otoferlin [Gallus gallus]
Length = 2371
Score = 32.3 bits (72), Expect = 2.8
Identities = 19/71 (26%), Positives = 35/71 (48%), Gaps = 1/71 (1%)
Query: 16 LRASFW-SLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKRKGG 74
L A W +L + + + C + G+++P + +V + T + + K+KGG
Sbjct: 1616 LEAVNWEALLDQHFPALLCQEEQGKQLPGKEVLVIATTARYQNPEGFVVLPGGHRKKKGG 1675
Query: 75 GSGGGNLEMEK 85
G GGG E+E+
Sbjct: 1676 GGGGGGEEIEE 1686
>ref|XP_575930.1| PREDICTED: similar to 2810043G13Rik protein [Rattus norvegicus]
Length = 520
Score = 31.6 bits (70), Expect = 4.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 10 GKEKGYLRASFW--SLYSEAYGSERC-MKRWGRRIPALD----AVVDSITDVVGG 57
GKE G LR +FW L+ G R + W R++ A+ +V S+T V+GG
Sbjct: 137 GKEAGTLRINFWVCKLFGRIGGGNRLPCRAWARKLAAVPRGFYPMVMSLTSVLGG 191
>ref|XP_543331.1| PREDICTED: similar to serine/threonine kinase 25 [Canis familiaris]
Length = 656
Score = 31.6 bits (70), Expect = 4.8
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 55 VGGDH--RVLKILMEELKRKGGGSGGGNLEMEKVFKLARE 92
VGG H RVL + ++E ++ GG G E+E F LA E
Sbjct: 598 VGGAHGRRVLSLQLKEKHKQSGGGVGALEELENAFSLAEE 637
>ref|ZP_00263673.1| COG2603: Predicted ATPase [Pseudomonas fluorescens PfO-1]
Length = 367
Score = 31.2 bits (69), Expect = 6.3
Identities = 20/59 (33%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Query: 37 WGRRIPALDAVVDSITDVVGGD-HRVLKILMEELKRKGGGSGGGNLEMEKVFKLAREVY 94
+GR L +D++ +GG+ HR +++LMEE + G SG L + L RE Y
Sbjct: 273 FGRFCERLLESLDNVHKRLGGERHRRMRVLMEEALAEQGRSGAVELHRAWIEGLLREYY 331
>sp|P08696|BCN5_CLOPE Bacteriocin BCN5 gi|9507358|ref|NP_040451.1| bacteriocin [Plasmid
pIP404] gi|150739|gb|AAA98249.1| bacteriocin
gi|150737|gb|AAA98248.1| bacteriocin
Length = 890
Score = 31.2 bits (69), Expect = 6.3
Identities = 28/101 (27%), Positives = 44/101 (42%), Gaps = 9/101 (8%)
Query: 15 YLRASFWSLYSEAYGSER-CMKRWGRRIPALDAVVD------SITDVVGGDHRVLKILME 67
Y R F YG R M W + I A A+++ S +DVV G R L+ ++
Sbjct: 490 YFRNQFGFGQRSGYGDNRGFMIGWAKSIGAKAALIELPGSTKSHSDVVNG--RYLQKIIN 547
Query: 68 ELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLE 108
+ GGSGG + ++ E G+V+ Q+ + E
Sbjct: 548 AVTNLIGGSGGSSSGGSSFSDVSYEATGEVINVQSFLNVRE 588
>pir||FOMSIE retrovirus-related gag polyprotein - mouse intracisternal
A-particle MIAE gi|399521|sp|P31790|GAG_IPMAE
Retrovirus-related Gag polyprotein
Length = 255
Score = 30.8 bits (68), Expect = 8.2
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 1 EQMKRWKVRGKEKGYLRASF---WSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGG 57
+++K VR ++KG L+A W L E C + LD + +S+++V G
Sbjct: 53 DKLKGDLVREQQKGKLKAGIIPLWKLVKSCLTDEDCQQMVEAGQKVLDEIQESLSEVERG 112
Query: 58 DHRVLKILMEELKRKGGGSGGGNLEMEKVFKLAREVYGKVVKK 100
+ ++ LK G +G LE E+ + G++ K+
Sbjct: 113 EKVKVERKQSALKNLGLSTG---LEPEEKRYKGKNALGEIRKR 152
>ref|YP_111401.1| hypothetical protein BPSS1389 [Burkholderia pseudomallei K96243]
gi|52212830|emb|CAH38864.1| hypothetical protein
[Burkholderia pseudomallei K96243]
Length = 468
Score = 30.8 bits (68), Expect = 8.2
Identities = 10/31 (32%), Positives = 23/31 (73%)
Query: 49 DSITDVVGGDHRVLKILMEELKRKGGGSGGG 79
D+ + + G D +++ +L ++L+++ GG+GGG
Sbjct: 30 DARSQIAGLDQQIMGLLRQQLQKRDGGTGGG 60
>ref|NP_344411.1| hypothetical protein SSO3097 [Sulfolobus solfataricus P2]
gi|13816515|gb|AAK43201.1| Conserved hypothetical
protein [Sulfolobus solfataricus P2]
gi|25394523|pir||B90493 conserved hypothetical protein
[imported] - Sulfolobus solfataricus
Length = 220
Score = 30.8 bits (68), Expect = 8.2
Identities = 11/35 (31%), Positives = 21/35 (59%)
Query: 21 WSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVV 55
WS Y+E + E + RRIP+LD + +++ ++
Sbjct: 14 WSRYTERFNEEELYVKVVRRIPSLDGLTENVMGII 48
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,362,151
Number of Sequences: 2540612
Number of extensions: 7595923
Number of successful extensions: 24356
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 24342
Number of HSP's gapped (non-prelim): 18
length of query: 113
length of database: 863,360,394
effective HSP length: 89
effective length of query: 24
effective length of database: 637,245,926
effective search space: 15293902224
effective search space used: 15293902224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)
Medicago: description of AC140030.9