BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC140028.4 - phase: 2 /pseudo
(30 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB68136.1| helicase-like protein [Arabidopsis thaliana] gi|... 38 0.068
ref|NP_191289.2| transcriptional activator, putative [Arabidopsi... 38 0.068
ref|XP_230473.3| PREDICTED: similar to yeast INO80-like protein ... 34 0.98
ref|XP_510320.1| PREDICTED: hypothetical protein XP_510320 [Pan ... 34 0.98
gb|AAH61495.1| 4632409L19Rik protein [Mus musculus] 34 0.98
ref|XP_587846.1| PREDICTED: similar to yeast INO80-like protein,... 34 0.98
emb|CAI11899.1| novel protein containing an SNF2 family N-termin... 34 0.98
emb|CAI20655.1| novel protein [Danio rerio] 34 0.98
ref|XP_421134.1| PREDICTED: similar to hypothetical protein KIAA... 34 0.98
ref|NP_080850.2| yeast INO80-like protein [Mus musculus] 34 0.98
dbj|BAC30644.1| unnamed protein product [Mus musculus] 34 0.98
dbj|BAA86573.1| KIAA1259 protein [Homo sapiens] 34 0.98
ref|NP_060023.1| yeast INO80-like protein [Homo sapiens] gi|3346... 34 0.98
gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 5... 33 1.7
dbj|BAC98127.1| mKIAA1259 protein [Mus musculus] 33 1.7
emb|CAA04008.1| asparaginyl-tRNA synthetase [Homo sapiens] gi|12... 32 4.9
dbj|BAE01834.1| unnamed protein product [Macaca fascicularis] 32 4.9
dbj|BAE00884.1| unnamed protein product [Macaca fascicularis] 32 4.9
dbj|BAD96555.1| asparaginyl-tRNA synthetase variant [Homo sapiens] 32 4.9
ref|XP_512149.1| PREDICTED: asparaginyl-tRNA synthetase [Pan tro... 32 6.4
>emb|CAB68136.1| helicase-like protein [Arabidopsis thaliana]
gi|11357327|pir||T45808 helicase-like protein -
Arabidopsis thaliana
Length = 1496
Score = 38.1 bits (87), Expect = 0.068
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 6 EVRKREEKEAAEALRRDQELREAKR 30
E RK++EKEAAEA +R+QE RE+KR
Sbjct: 426 EERKKQEKEAAEAFKREQEQRESKR 450
>ref|NP_191289.2| transcriptional activator, putative [Arabidopsis thaliana]
Length = 1507
Score = 38.1 bits (87), Expect = 0.068
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 6 EVRKREEKEAAEALRRDQELREAKR 30
E RK++EKEAAEA +R+QE RE+KR
Sbjct: 426 EERKKQEKEAAEAFKREQEQRESKR 450
>ref|XP_230473.3| PREDICTED: similar to yeast INO80-like protein [Rattus norvegicus]
Length = 1620
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 381 VEKEHRKRAEKEALEQRKLDEEMREAKR 408
>ref|XP_510320.1| PREDICTED: hypothetical protein XP_510320 [Pan troglodytes]
Length = 1463
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 353 VEKEHRKRAEKEALEQRKLDEEMREAKR 380
>gb|AAH61495.1| 4632409L19Rik protein [Mus musculus]
Length = 1141
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 355 VEKEHRKRAEKEALEQRKLDEEMREAKR 382
>ref|XP_587846.1| PREDICTED: similar to yeast INO80-like protein, partial [Bos
taurus]
Length = 451
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 362 VEKEHRKRAEKEALEQRKLDEEMREAKR 389
>emb|CAI11899.1| novel protein containing an SNF2 family N-terminal domain and a
Helicase conserved C-terminal domain [Danio rerio]
Length = 1582
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 354 VEKEHRKRAEKEALEQRKLDEEMREAKR 381
>emb|CAI20655.1| novel protein [Danio rerio]
Length = 1552
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 343 VEKEHRKRAEKEALEQRKLDEEMREAKR 370
>ref|XP_421134.1| PREDICTED: similar to hypothetical protein KIAA1259 [Gallus gallus]
Length = 2034
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 357 VEKEHRKRAEKEALEQRKLDEEMREAKR 384
>ref|NP_080850.2| yeast INO80-like protein [Mus musculus]
Length = 1559
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 355 VEKEHRKRAEKEALEQRKLDEEMREAKR 382
>dbj|BAC30644.1| unnamed protein product [Mus musculus]
Length = 746
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 355 VEKEHRKRAEKEALEQRKLDEEMREAKR 382
>dbj|BAA86573.1| KIAA1259 protein [Homo sapiens]
Length = 1561
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 358 VEKEHRKRAEKEALEQRKLDEEMREAKR 385
>ref|NP_060023.1| yeast INO80-like protein [Homo sapiens]
gi|33469139|ref|NP_115572.2| yeast INO80-like protein
[Homo sapiens]
Length = 1556
Score = 34.3 bits (77), Expect = 0.98
Identities = 16/28 (57%), Positives = 21/28 (74%)
Query: 3 LQTEVRKREEKEAAEALRRDQELREAKR 30
++ E RKR EKEA E + D+E+REAKR
Sbjct: 353 VEKEHRKRAEKEALEQRKLDEEMREAKR 380
>gb|EAK81123.1| hypothetical protein UM00751.1 [Ustilago maydis 521]
gi|49068154|ref|XP_398366.1| hypothetical protein
UM00751.1 [Ustilago maydis 521]
Length = 1910
Score = 33.5 bits (75), Expect = 1.7
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 4 QTEVRKREEKEAAEALRRDQELREAKR 30
+ E+RK+ E+EA E ++++E+REAKR
Sbjct: 800 ERELRKKAEREALEKAKKEEEMREAKR 826
>dbj|BAC98127.1| mKIAA1259 protein [Mus musculus]
Length = 1196
Score = 33.5 bits (75), Expect = 1.7
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 6 EVRKREEKEAAEALRRDQELREAKR 30
E RKR EKEA E + D+E+REAKR
Sbjct: 2 EHRKRAEKEALEQRKLDEEMREAKR 26
>emb|CAA04008.1| asparaginyl-tRNA synthetase [Homo sapiens]
gi|12804549|gb|AAH01687.1| Asparaginyl-tRNA synthetase
[Homo sapiens] gi|3915059|sp|O43776|SYNC_HUMAN
Asparaginyl-tRNA synthetase, cytoplasmic
(Asparagine--tRNA ligase) (AsnRS)
gi|3894218|dbj|BAA34600.1| Asparaginyl tRNA Synthetase
[Homo sapiens] gi|4758762|ref|NP_004530.1|
asparaginyl-tRNA synthetase [Homo sapiens]
Length = 548
Score = 32.0 bits (71), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 71 HREQMKSESREKKEAEDSLRREKNLEEAKK 100
>dbj|BAE01834.1| unnamed protein product [Macaca fascicularis]
Length = 558
Score = 32.0 bits (71), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 81 HREQMKSESREKKEAEDSLRREKNLEEAKK 110
>dbj|BAE00884.1| unnamed protein product [Macaca fascicularis]
Length = 223
Score = 32.0 bits (71), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 81 HREQMKSESREKKEAEDSLRREKNLEEAKK 110
>dbj|BAD96555.1| asparaginyl-tRNA synthetase variant [Homo sapiens]
Length = 548
Score = 32.0 bits (71), Expect = 4.9
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 71 HREQMKSESREKKEAEDSLRREKNLEEAKK 100
>ref|XP_512149.1| PREDICTED: asparaginyl-tRNA synthetase [Pan troglodytes]
Length = 720
Score = 31.6 bits (70), Expect = 6.4
Identities = 14/30 (46%), Positives = 21/30 (69%)
Query: 1 HSLQTEVRKREEKEAAEALRRDQELREAKR 30
H Q + RE+KEA ++LRR++ L EAK+
Sbjct: 243 HREQMKNESREKKEAEDSLRREKNLEEAKK 272
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.306 0.120 0.290
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,610,136
Number of Sequences: 2540612
Number of extensions: 555103
Number of successful extensions: 6044
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6024
Number of HSP's gapped (non-prelim): 20
length of query: 30
length of database: 863,360,394
effective HSP length: 6
effective length of query: 24
effective length of database: 848,116,722
effective search space: 20354801328
effective search space used: 20354801328
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC140028.4