BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.7 - phase: 0
(46 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_550172.1| hypothetical protein [Oryza sativa (japonica cu... 37 0.19
ref|NP_909290.1| P0009G03.26 [Oryza sativa (japonica cultivar-gr... 37 0.19
gb|AAP55153.1| mutator-like transposase [Oryza sativa (japonica ... 33 1.6
gb|AAP54600.1| mutator-like transposase [Oryza sativa (japonica ... 33 1.6
gb|AAP54539.1| putative Mu transposable element [Oryza sativa (j... 33 1.6
gb|AAP54160.1| putative transposase [Oryza sativa (japonica cult... 33 1.6
gb|AAP53990.1| putative mutator protein [Oryza sativa (japonica ... 33 1.6
gb|AAP53526.1| Mutator-like transposase [Oryza sativa (japonica ... 33 1.6
gb|AAP53004.1| putative transposase related protein [Oryza sativ... 33 1.6
emb|CAE01942.2| OSJNBa0073L13.4 [Oryza sativa (japonica cultivar... 33 1.6
gb|AAP44660.1| putative mutator-like transposase [Oryza sativa (... 33 1.6
ref|NP_908464.1| unnamed protein product [Oryza sativa (japonica... 33 1.6
ref|NP_912846.1| unnamed protein product [Oryza sativa (japonica... 33 1.6
ref|XP_475966.1| putative mutator-like transposase [Oryza sativa... 33 1.6
ref|XP_475854.1| putative mutator transposase [Oryza sativa (jap... 33 1.6
ref|XP_475773.1| putative mutator-like transposase. [Oryza sativ... 33 1.6
ref|XP_474655.1| OSJNBa0052P16.6 [Oryza sativa (japonica cultiva... 33 1.6
ref|XP_474464.1| OSJNBa0039K24.24 [Oryza sativa (japonica cultiv... 33 1.6
ref|XP_474355.1| OSJNBa0064G10.20 [Oryza sativa (japonica cultiv... 33 1.6
ref|XP_474197.1| OSJNBa0011F23.13 [Oryza sativa (japonica cultiv... 33 1.6
>ref|XP_550172.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|54290451|dbj|BAD61338.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|54290228|dbj|BAD61116.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 36.6 bits (83), Expect = 0.19
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Query: 2 RRAKKGRPPITRIRTEMD-DVETERRCGVCRMSDHSRKDC 40
RRAK+GRP TR+++ +D V +R C C + H R C
Sbjct: 692 RRAKRGRPRSTRLKSPVDGGVRKKRICSNCHLKGHYRTGC 731
>ref|NP_909290.1| P0009G03.26 [Oryza sativa (japonica cultivar-group)]
Length = 733
Score = 36.6 bits (83), Expect = 0.19
Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 1/40 (2%)
Query: 2 RRAKKGRPPITRIRTEMD-DVETERRCGVCRMSDHSRKDC 40
RRAK+GRP TR+++ +D V +R C C + H R C
Sbjct: 661 RRAKRGRPRSTRLKSPVDGGVRKKRICSNCHLKGHYRTGC 700
>gb|AAP55153.1| mutator-like transposase [Oryza sativa (japonica cultivar-group)]
gi|37537128|ref|NP_922866.1| mutator-like transposase
[Oryza sativa (japonica cultivar-group)]
gi|18266653|gb|AAL67599.1| mutator-like transposase
[Oryza sativa]
Length = 1638
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKTC 856
>gb|AAP54600.1| mutator-like transposase [Oryza sativa (japonica cultivar-group)]
gi|37536022|ref|NP_922313.1| mutator-like transposase
[Oryza sativa (japonica cultivar-group)]
gi|10140679|gb|AAG13514.1| mutator-like transposase
[Oryza sativa (japonica cultivar-group)]
Length = 1626
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>gb|AAP54539.1| putative Mu transposable element [Oryza sativa (japonica
cultivar-group)] gi|37535900|ref|NP_922252.1| putative
Mu transposable element [Oryza sativa (japonica
cultivar-group)] gi|22324952|gb|AAM95679.1| putative Mu
transposable element [Oryza sativa (japonica
cultivar-group)]
Length = 1536
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>gb|AAP54160.1| putative transposase [Oryza sativa (japonica cultivar-group)]
gi|37535142|ref|NP_921873.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
gi|22758321|gb|AAN05525.1| putative transposase [Oryza
sativa (japonica cultivar-group)]
Length = 1597
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>gb|AAP53990.1| putative mutator protein [Oryza sativa (japonica cultivar-group)]
gi|37534802|ref|NP_921703.1| putative mutator protein
[Oryza sativa (japonica cultivar-group)]
Length = 1656
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>gb|AAP53526.1| Mutator-like transposase [Oryza sativa (japonica cultivar-group)]
gi|37533874|ref|NP_921239.1| Mutator-like transposase
[Oryza sativa (japonica cultivar-group)]
gi|13129433|gb|AAK13091.1| Mutator-like transposase
[Oryza sativa]
Length = 1641
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>gb|AAP53004.1| putative transposase related protein [Oryza sativa (japonica
cultivar-group)] gi|37532830|ref|NP_920717.1| putative
transposase related protein [Oryza sativa (japonica
cultivar-group)] gi|20303617|gb|AAM19044.1| putative
transposase related protein [Oryza sativa (japonica
cultivar-group)]
Length = 1557
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 789 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 829
>emb|CAE01942.2| OSJNBa0073L13.4 [Oryza sativa (japonica cultivar-group)]
gi|50921337|ref|XP_471029.1| OSJNBa0073L13.4 [Oryza
sativa (japonica cultivar-group)]
Length = 1342
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 687 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 727
>gb|AAP44660.1| putative mutator-like transposase [Oryza sativa (japonica
cultivar-group)] gi|50917621|ref|XP_469207.1| putative
mutator-like transposase [Oryza sativa (japonica
cultivar-group)]
Length = 1026
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 3 RAKKGRPPITRIRTEMDDVETER--RCGVCRMSDHSRKDC 40
R K GR RIR +MD++E R RC C H+ K C
Sbjct: 800 RGKAGRRKTRRIRNDMDELEAGRVKRCSKCDERGHTYKHC 839
>ref|NP_908464.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1591
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>ref|NP_912846.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 938
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>ref|XP_475966.1| putative mutator-like transposase [Oryza sativa (japonica
cultivar-group)] gi|42491376|gb|AAS16882.1| putative
polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1433
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 673 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 713
>ref|XP_475854.1| putative mutator transposase [Oryza sativa (japonica
cultivar-group)] gi|47900530|gb|AAT39265.1| putative
mutator-like transposase [Oryza sativa (japonica
cultivar-group)] gi|47900500|gb|AAT39257.1| putative
mutator transposase [Oryza sativa (japonica
cultivar-group)]
Length = 1385
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>ref|XP_475773.1| putative mutator-like transposase. [Oryza sativa (japonica
cultivar-group)] gi|47900422|gb|AAT39216.1| putative
mutator-like transposase. [Oryza sativa (japonica
cultivar-group)]
Length = 1684
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 816 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 856
>ref|XP_474655.1| OSJNBa0052P16.6 [Oryza sativa (japonica cultivar-group)]
gi|38569201|emb|CAE04557.3| OSJNBa0052P16.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1489
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 665 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 705
>ref|XP_474464.1| OSJNBa0039K24.24 [Oryza sativa (japonica cultivar-group)]
gi|38345521|emb|CAE01805.2| OSJNBa0039K24.24 [Oryza
sativa (japonica cultivar-group)]
Length = 1286
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 722 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 762
>ref|XP_474355.1| OSJNBa0064G10.20 [Oryza sativa (japonica cultivar-group)]
gi|38344204|emb|CAE05769.2| OSJNBa0064G10.20 [Oryza
sativa (japonica cultivar-group)]
Length = 1602
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 784 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKTC 824
>ref|XP_474197.1| OSJNBa0011F23.13 [Oryza sativa (japonica cultivar-group)]
gi|38346407|emb|CAE54572.1| OSJNBa0011F23.13 [Oryza
sativa (japonica cultivar-group)]
Length = 1396
Score = 33.5 bits (75), Expect = 1.6
Identities = 17/41 (41%), Positives = 21/41 (50%), Gaps = 3/41 (7%)
Query: 3 RAKKGRPPITRIRTEMDDVET---ERRCGVCRMSDHSRKDC 40
R KKGR RIR +MD+ E RC C + H+ K C
Sbjct: 665 RVKKGRRQTRRIRNDMDESEAGGRTLRCSKCDLRGHTYKKC 705
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.325 0.135 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,694,750
Number of Sequences: 2540612
Number of extensions: 1439923
Number of successful extensions: 6123
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 6098
Number of HSP's gapped (non-prelim): 87
length of query: 46
length of database: 863,360,394
effective HSP length: 22
effective length of query: 24
effective length of database: 807,466,930
effective search space: 19379206320
effective search space used: 19379206320
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)
Medicago: description of AC139841.7