BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139841.3 + phase: 0
(154 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK30202.1| ribosome protein L23a [Daucus carota] gi|49036456... 260 5e-69
emb|CAB75762.1| ribosomal L23a-like protein [Arabidopsis thalian... 259 9e-69
emb|CAA63107.1| ribosomal protein L23 [Spinacia oleracea] 259 9e-69
emb|CAA63112.1| ribosomal protein L23 [Spinacia oleracea] 258 2e-68
gb|AAM64290.1| 60S ribosomal protein L23A [Arabidopsis thaliana] 256 8e-68
gb|AAC27837.1| 60S ribosomal protein L23A [Arabidopsis thaliana]... 256 1e-67
gb|AAB87692.1| ribosomal protein L23a [Arabidopsis thaliana] 254 2e-67
gb|AAB86852.1| ribosomal protein L23a [Fritillaria agrestis] gi|... 254 3e-67
pir||S48026 ribosomal protein L23a, cytosolic - common tobacco g... 248 2e-65
emb|CAE01633.2| OSJNBa0029H02.16 [Oryza sativa (japonica cultiva... 243 9e-64
ref|NP_908898.1| putative 60S ribosomal protein L23A [Oryza sati... 234 4e-61
gb|AAS66970.1| ribosomal protein L23a [Danio rerio] gi|48597012|... 210 6e-54
emb|CAG00513.1| unnamed protein product [Tetraodon nigroviridis] 208 2e-53
gb|AAH78526.1| MGC85348 protein [Xenopus laevis] 206 9e-53
gb|AAH77046.1| MGC89958 protein [Xenopus tropicalis] gi|52346130... 205 2e-52
gb|AAQ04686.1| ribosomal protein L23a [Mus musculus] gi|17105394... 205 2e-52
ref|XP_574848.1| PREDICTED: similar to 60S ribosomal protein L23... 205 2e-52
ref|XP_537747.1| PREDICTED: similar to suppressor of Ty 6 homolo... 205 2e-52
ref|XP_511361.1| PREDICTED: similar to ribosomal protein L23a; 6... 205 2e-52
ref|XP_594319.1| PREDICTED: similar to 60S ribosomal protein L23... 205 2e-52
>gb|AAK30202.1| ribosome protein L23a [Daucus carota]
gi|49036456|sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein
L23a
Length = 154
Score = 260 bits (664), Expect = 5e-69
Identities = 132/148 (89%), Positives = 139/148 (93%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTA-IKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
DV+KK+D KAQALK AKAVKSGT KK KKIRT+VTFHRP+T TKDRNPKYPRISATPR
Sbjct: 7 DVTKKSDAKAQALKTAKAVKSGTTKFKKVKKIRTSVTFHRPRTLTKDRNPKYPRISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLD YQILK+PLTTESAMKKIEDNNTLVFIVD+RA+KKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>emb|CAB75762.1| ribosomal L23a-like protein [Arabidopsis thaliana]
gi|23308155|gb|AAN18047.1| At3g55280/T26I12_160
[Arabidopsis thaliana] gi|21553861|gb|AAM62954.1|
ribosomal L23a-like protein [Arabidopsis thaliana]
gi|15215831|gb|AAK91460.1| AT3g55280/T26I12_160
[Arabidopsis thaliana] gi|15233226|ref|NP_191088.1| 60S
ribosomal protein L23A (RPL23aB) [Arabidopsis thaliana]
gi|11276860|pir||T47667 ribosomal L23a-like protein -
Arabidopsis thaliana
Length = 154
Score = 259 bits (662), Expect = 9e-69
Identities = 132/148 (89%), Positives = 138/148 (93%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
DV+KK DPKA+ALKAAKAVKSG +KK AKKIRT VTFHRPKT T R PKYP+ISATPR
Sbjct: 7 DVTKKADPKAKALKAAKAVKSGQIVKKPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>emb|CAA63107.1| ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 259 bits (662), Expect = 9e-69
Identities = 133/147 (90%), Positives = 137/147 (92%), Gaps = 3/147 (2%)
Query: 11 KKTDPKAQALKAAKAVKSGTAI---KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRN 67
KK DPKAQALKAAKAVKSG + K +KKIRT VTFHRPKT K+RNPKYPRISATPRN
Sbjct: 9 KKADPKAQALKAAKAVKSGASTLKKKASKKIRTKVTFHRPKTFKKERNPKYPRISATPRN 68
Query: 68 KLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIR 127
KLDHYQILKFPLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQAKKVNTLIR
Sbjct: 69 KLDHYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIR 128
Query: 128 PDGTKKAYVRLTPDYDALDVANKIGII 154
PDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 129 PDGTKKAYVRLTPDYDALDVANKIGII 155
>emb|CAA63112.1| ribosomal protein L23 [Spinacia oleracea]
Length = 155
Score = 258 bits (659), Expect = 2e-68
Identities = 132/147 (89%), Positives = 138/147 (93%), Gaps = 3/147 (2%)
Query: 11 KKTDPKAQALKAAKAVKSGTAI---KKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRN 67
KK DPKAQALKAAKAVKSG+ I K +KKIRT VTFHRPKT K+RNPKYPRISATPRN
Sbjct: 9 KKADPKAQALKAAKAVKSGSNILKKKASKKIRTKVTFHRPKTFKKERNPKYPRISATPRN 68
Query: 68 KLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIR 127
KLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQ+KKVNTLIR
Sbjct: 69 KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQSKKVNTLIR 128
Query: 128 PDGTKKAYVRLTPDYDALDVANKIGII 154
PDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 129 PDGTKKAYVRLTPDYDALDVANKIGII 155
>gb|AAM64290.1| 60S ribosomal protein L23A [Arabidopsis thaliana]
Length = 154
Score = 256 bits (654), Expect = 8e-68
Identities = 131/148 (88%), Positives = 136/148 (91%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D +KK DPKA+ALKAAKAVKSG A KK KKIRT VTFHRPKT TK R KYP+ISATPR
Sbjct: 7 DTTKKADPKAKALKAAKAVKSGQAFKKKGKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>gb|AAC27837.1| 60S ribosomal protein L23A [Arabidopsis thaliana]
gi|16974523|gb|AAL31171.1| At2g39460/F12L6.12
[Arabidopsis thaliana] gi|14532452|gb|AAK63954.1|
At2g39460/F12L6.12 [Arabidopsis thaliana]
gi|14335112|gb|AAK59835.1| At2g39460/F12L6.12
[Arabidopsis thaliana] gi|11762271|gb|AAG40408.1|
At2g39460 [Arabidopsis thaliana]
gi|15225470|ref|NP_181478.1| 60S ribosomal protein L23A
(RPL23aA) [Arabidopsis thaliana] gi|7441024|pir||T00556
60S ribosomal protein L23A [imported] - Arabidopsis
thaliana
Length = 154
Score = 256 bits (653), Expect = 1e-67
Identities = 131/148 (88%), Positives = 136/148 (91%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKKA-KKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D +KK DPKA+ALKAAKAVKSG A KK KKIRT VTFHRPKT TK R KYP+ISATPR
Sbjct: 7 DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>gb|AAB87692.1| ribosomal protein L23a [Arabidopsis thaliana]
Length = 154
Score = 254 bits (650), Expect = 2e-67
Identities = 130/148 (87%), Positives = 136/148 (91%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKKA-KKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D +KK DPKA+ALKAAKAVKSG A KK KKIRT VTFHRPKT TK R KYP+ISATPR
Sbjct: 7 DTTKKADPKAKALKAAKAVKSGQAFKKKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAY+RLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYMRLTPDYDALDVANKIGII 154
>gb|AAB86852.1| ribosomal protein L23a [Fritillaria agrestis]
gi|3122703|sp|O22644|RL23A_FRIAG 60S ribosomal protein
L23A
Length = 154
Score = 254 bits (649), Expect = 3e-67
Identities = 131/148 (88%), Positives = 136/148 (91%), Gaps = 2/148 (1%)
Query: 9 VSKKTDPKAQALKAAKAVKSG--TAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
V+KK D KAQALK AKAVKSG T KKAKKIRT+VTFHRPKT KDRNPKYPRISA PR
Sbjct: 7 VAKKPDGKAQALKVAKAVKSGVSTLQKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLDHYQILK+PLTTESAMKKIEDNNTLVFIVD+RADKKKIK AVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDIANKIGII 154
>pir||S48026 ribosomal protein L23a, cytosolic - common tobacco
gi|585876|sp|Q07761|RL23A_TOBAC 60S ribosomal protein
L23a (L25) gi|310935|gb|AAA53296.1| 60S ribosomal
protein L25
Length = 154
Score = 248 bits (634), Expect = 2e-65
Identities = 127/148 (85%), Positives = 135/148 (90%), Gaps = 1/148 (0%)
Query: 8 DVSKKTDPKAQALKAAKAVKSGTAIKK-AKKIRTTVTFHRPKTQTKDRNPKYPRISATPR 66
D SKK+DPKAQA K AKAVKSG+ +KK ++KIRT VTFHRPKT KDRNPKYPRISA R
Sbjct: 7 DPSKKSDPKAQAAKVAKAVKSGSTLKKKSQKIRTKVTFHRPKTLKKDRNPKYPRISAPGR 66
Query: 67 NKLDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLI 126
NKLD Y ILK+PLTTESAMKKIEDNNTLVFIVD++ADKKKIKDAVKKMYDIQ KKVNTLI
Sbjct: 67 NKLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLI 126
Query: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
RPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct: 127 RPDGTKKAYVRLTPDYDALDVANKIGII 154
>emb|CAE01633.2| OSJNBa0029H02.16 [Oryza sativa (japonica cultivar-group)]
gi|50926169|ref|XP_473060.1| OSJNBa0029H02.16 [Oryza
sativa (japonica cultivar-group)]
gi|10241664|emb|CAC09501.1| putative 60s Ribosomal
protein L25 [Oryza sativa (indica cultivar-group)]
Length = 152
Score = 243 bits (619), Expect = 9e-64
Identities = 124/145 (85%), Positives = 131/145 (89%)
Query: 10 SKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKL 69
+KK D KAQALKAAKAVKSGTA K KKIRT+VTFHRPKT K R+PKYPR+S RNKL
Sbjct: 8 AKKGDAKAQALKAAKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKL 67
Query: 70 DHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPD 129
D YQILK+PLTTESAMKKIEDNNTLVFIVDL+ADKKKIK AVKKMYDIQAKKVNTLIRPD
Sbjct: 68 DQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD 127
Query: 130 GTKKAYVRLTPDYDALDVANKIGII 154
G KKAYV+LTPDYDALDVANKIGII
Sbjct: 128 GKKKAYVKLTPDYDALDVANKIGII 152
>ref|NP_908898.1| putative 60S ribosomal protein L23A [Oryza sativa (japonica
cultivar-group)] gi|21104815|dbj|BAB93400.1| putative
60S ribosomal protein L23A [Oryza sativa (japonica
cultivar-group)] gi|15290206|dbj|BAB63895.1| putative
60S ribosomal protein L23A [Oryza sativa (japonica
cultivar-group)]
Length = 152
Score = 234 bits (596), Expect = 4e-61
Identities = 121/145 (83%), Positives = 130/145 (89%), Gaps = 1/145 (0%)
Query: 11 KKTDPKAQ-ALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKL 69
KK D K Q ALK AKAVKSG+ +K+KKIRT+VTFHRPKT K R+PKYPR+SA RNKL
Sbjct: 8 KKADGKTQQALKVAKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKL 67
Query: 70 DHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPD 129
D YQILK+PLTTESAMKKIEDNNTLVFIVDL+ADKKKIK AVKKMYDIQAKKVNTLIRPD
Sbjct: 68 DQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD 127
Query: 130 GTKKAYVRLTPDYDALDVANKIGII 154
G KKAYV+LTPDYDALDVANKIGII
Sbjct: 128 GKKKAYVKLTPDYDALDVANKIGII 152
>gb|AAS66970.1| ribosomal protein L23a [Danio rerio]
gi|48597012|ref|NP_001001593.1| ribosomal protein L23a
[Danio rerio]
Length = 155
Score = 210 bits (534), Expect = 6e-54
Identities = 109/146 (74%), Positives = 118/146 (80%)
Query: 9 VSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNK 68
V KT+ K++ALKA KAV G +K KKIRTT TFHRPKT R PKYPR SA RNK
Sbjct: 10 VPAKTEAKSKALKAKKAVLKGVHSQKKKKIRTTPTFHRPKTLRLRRQPKYPRKSAPRRNK 69
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
LDHY I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK YDI KVNTLIRP
Sbjct: 70 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKHAVKKPYDIDVAKVNTLIRP 129
Query: 129 DGTKKAYVRLTPDYDALDVANKIGII 154
DG KKAYVRL PDYDALDVANKIGII
Sbjct: 130 DGEKKAYVRLAPDYDALDVANKIGII 155
>emb|CAG00513.1| unnamed protein product [Tetraodon nigroviridis]
Length = 155
Score = 208 bits (530), Expect = 2e-53
Identities = 107/146 (73%), Positives = 119/146 (81%)
Query: 9 VSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNK 68
V KT+ K++ALKA KAV G ++ KKIRT+ TF RPKTQ R PKYPR SA RNK
Sbjct: 10 VPAKTEAKSKALKAKKAVLKGVHSQRRKKIRTSPTFRRPKTQRLRRQPKYPRKSAPRRNK 69
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
LDHY I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRP
Sbjct: 70 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKHAVKKLYDIDVAKVNTLIRP 129
Query: 129 DGTKKAYVRLTPDYDALDVANKIGII 154
DG KKAYVRL PDYDALDVANKIGII
Sbjct: 130 DGEKKAYVRLAPDYDALDVANKIGII 155
>gb|AAH78526.1| MGC85348 protein [Xenopus laevis]
Length = 155
Score = 206 bits (524), Expect = 9e-53
Identities = 106/146 (72%), Positives = 118/146 (80%)
Query: 9 VSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNK 68
V KT+ K++ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNK
Sbjct: 10 VPPKTEAKSKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPTRNK 69
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
LDHY I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVK++YDI +KVNTLIRP
Sbjct: 70 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKQLYDIDVQKVNTLIRP 129
Query: 129 DGTKKAYVRLTPDYDALDVANKIGII 154
DG KKAYVRL PDYDALDVANKIGII
Sbjct: 130 DGEKKAYVRLAPDYDALDVANKIGII 155
>gb|AAH77046.1| MGC89958 protein [Xenopus tropicalis]
gi|52346130|ref|NP_001005109.1| MGC89958 protein
[Xenopus tropicalis]
Length = 155
Score = 205 bits (522), Expect = 2e-52
Identities = 106/146 (72%), Positives = 117/146 (79%)
Query: 9 VSKKTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNK 68
V K + K++ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNK
Sbjct: 10 VPPKIEAKSKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPTRNK 69
Query: 69 LDHYQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRP 128
LDHY I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI +KVNTLIRP
Sbjct: 70 LDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVQKVNTLIRP 129
Query: 129 DGTKKAYVRLTPDYDALDVANKIGII 154
DG KKAYVRL PDYDALDVANKIGII
Sbjct: 130 DGEKKAYVRLAPDYDALDVANKIGII 155
>gb|AAQ04686.1| ribosomal protein L23a [Mus musculus] gi|17105394|ref|NP_000975.2|
ribosomal protein L23a [Homo sapiens]
gi|46430508|ref|NP_997406.1| ribosomal protein L23a [Mus
musculus] gi|62656804|ref|XP_577114.1| PREDICTED:
similar to 60S ribosomal protein L23a [Rattus
norvegicus] gi|57087623|ref|XP_536877.1| PREDICTED:
similar to Rpl23a protein [Canis familiaris]
gi|56541040|gb|AAH86883.1| Ribosomal protein L23a [Mus
musculus] gi|61860780|ref|XP_583734.1| PREDICTED:
similar to 60S ribosomal protein L23a [Bos taurus]
gi|56206014|emb|CAI24330.1| ribosomal protein L23a [Mus
musculus] gi|20987630|gb|AAH29892.1| Ribosomal protein
L23a [Mus musculus] gi|56541042|gb|AAH86884.1| Rpl23a
protein [Mus musculus] gi|37046838|gb|AAH58041.1|
Ribosomal protein L23a [Homo sapiens]
gi|15680215|gb|AAH14459.1| Ribosomal protein L23a [Homo
sapiens] gi|57690|emb|CAA46336.1| ribosomal protein L23a
[Rattus rattus] gi|51338638|sp|P62751|RL23A_MOUSE 60S
ribosomal protein L23a gi|51338637|sp|P62750|RL23A_HUMAN
60S ribosomal protein L23a
gi|51338615|sp|P62752|RL23A_RAT 60S ribosomal protein
L23a gi|2739452|gb|AAC51934.1| ribosomal protein L23A
[Homo sapiens] gi|1399086|gb|AAB03210.1| ribosomal
protein L23a
Length = 156
Score = 205 bits (521), Expect = 2e-52
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>ref|XP_574848.1| PREDICTED: similar to 60S ribosomal protein L23a [Rattus
norvegicus]
Length = 156
Score = 205 bits (521), Expect = 2e-52
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
>ref|XP_537747.1| PREDICTED: similar to suppressor of Ty 6 homolog [Canis familiaris]
Length = 1665
Score = 205 bits (521), Expect = 2e-52
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 1523 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 1582
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 1583 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 1642
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 1643 KKAYVRLAPDYDALDVANKIGII 1665
>ref|XP_511361.1| PREDICTED: similar to ribosomal protein L23a; 60S ribosomal protein
L23a; cDNA sequence BC029892 [Pan troglodytes]
Length = 231
Score = 205 bits (521), Expect = 2e-52
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 89 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 148
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 149 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 208
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 209 KKAYVRLAPDYDALDVANKIGII 231
>ref|XP_594319.1| PREDICTED: similar to 60S ribosomal protein L23a [Bos taurus]
Length = 156
Score = 205 bits (521), Expect = 2e-52
Identities = 106/143 (74%), Positives = 115/143 (80%)
Query: 12 KTDPKAQALKAAKAVKSGTAIKKAKKIRTTVTFHRPKTQTKDRNPKYPRISATPRNKLDH 71
K + KA+ALKA KAV G K KKIRT+ TF RPKT R PKYPR SA RNKLDH
Sbjct: 14 KAEAKAKALKAKKAVLKGVHSHKKKKIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDH 73
Query: 72 YQILKFPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGT 131
Y I+KFPLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+YDI KVNTLIRPDG
Sbjct: 74 YAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE 133
Query: 132 KKAYVRLTPDYDALDVANKIGII 154
KKAYVRL PDYDALDVANKIGII
Sbjct: 134 KKAYVRLAPDYDALDVANKIGII 156
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.317 0.132 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,464,145
Number of Sequences: 2540612
Number of extensions: 8187386
Number of successful extensions: 29636
Number of sequences better than 10.0: 518
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 110
Number of HSP's that attempted gapping in prelim test: 29055
Number of HSP's gapped (non-prelim): 559
length of query: 154
length of database: 863,360,394
effective HSP length: 130
effective length of query: 24
effective length of database: 533,080,834
effective search space: 12793940016
effective search space used: 12793940016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC139841.3