BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139748.7 + phase: 0 /pseudo
         (144 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA70997.1| heterodisulfide reductase [Methanosarcina barker...    33  1.1
ref|NP_633868.1| Heterodisulfide reductase, subunit [Methanosarc...    33  1.9
sp|Q8PVW3|HDRD_METMA CoB--CoM heterodisulfide reductase 2 iron-s...    33  1.9
gb|AAM04128.1| heterodisulfide reductase, subunit D [Methanosarc...    32  2.5
emb|CAE67142.1| Hypothetical protein CBG12565 [Caenorhabditis br...    30  9.4

>emb|CAA70997.1| heterodisulfide reductase [Methanosarcina barkeri]
           gi|23396608|sp|P96797|HDRD_METBA CoB--CoM
           heterodisulfide reductase iron-sulfur subunit D
          Length = 409

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           + Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 ITYHDPCHLGRHVGVFNAPRYVLSHIPGVKFVEMDRSKEFQRCCGAGGGV 342


>ref|NP_633868.1| Heterodisulfide reductase, subunit [Methanosarcina mazei Go1]
           gi|20906369|gb|AAM31540.1| Heterodisulfide reductase,
           subunit [Methanosarcina mazei Goe1]
          Length = 420

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 304 VTYHDPCHLGRHVGVFDAPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 353


>sp|Q8PVW3|HDRD_METMA CoB--CoM heterodisulfide reductase 2 iron-sulfur subunit D
          Length = 409

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFDAPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>gb|AAM04128.1| heterodisulfide reductase, subunit D [Methanosarcina acetivorans
           str. C2A] gi|41017215|sp|Q8TSV7|HDRD_METAC CoB--CoM
           heterodisulfide reductase 2 iron-sulfur subunit D
           gi|20089573|ref|NP_615648.1| heterodisulfide reductase,
           subunit D [Methanosarcina acetivorans C2A]
          Length = 409

 Score = 32.3 bits (72), Expect = 2.5
 Identities = 17/50 (34%), Positives = 22/50 (44%)

Query: 39  VRYRSPCHERRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNI 88
           V Y  PCH  R    +  PR  LS   G+KF E  +  E +  CG    +
Sbjct: 293 VTYHDPCHLGRHVGVFEPPRYVLSHIPGVKFVEMDRVKEFQRCCGAGGGV 342


>emb|CAE67142.1| Hypothetical protein CBG12565 [Caenorhabditis briggsae]
          Length = 937

 Score = 30.4 bits (67), Expect = 9.4
 Identities = 23/64 (35%), Positives = 29/64 (44%), Gaps = 5/64 (7%)

Query: 48  RRRPRWWTRPRVPLSCASGIKFREKQQRNEPRHRCGQSSNICI*QSLWLIGKS-*SNNFT 106
           RRR R  +R R P S A+G  +R    R+  R R   SS        W   +S  SNN  
Sbjct: 175 RRRDRSHSRSRSPPSSANGSHYRSSSHRHSRRRRSRSSSR----DRDWNSRRSNTSNNDR 230

Query: 107 HSRW 110
           +S W
Sbjct: 231 YSEW 234


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.350    0.149    0.585 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,263,622
Number of Sequences: 2540612
Number of extensions: 7953412
Number of successful extensions: 22677
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22673
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 863,360,394
effective HSP length: 120
effective length of query: 24
effective length of database: 558,486,954
effective search space: 13403686896
effective search space used: 13403686896
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.9 bits)
S2: 67 (30.4 bits)