BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.5 + phase: 0 /pseudo
(1608 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO73527.1| gag-pol polyprotein [Glycine max] 1171 0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max] 1167 0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max] 1161 0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max] 1159 0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max] 1139 0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max] 1117 0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana] 1085 0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein... 1020 0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva... 1006 0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap... 1001 0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 996 0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica... 993 0.0
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 991 0.0
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 982 0.0
gb|AAL35396.1| Opie2a pol [Zea mays] 960 0.0
gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cult... 957 0.0
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult... 926 0.0
ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cu... 911 0.0
ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica... 905 0.0
gb|AAL66759.1| putative pol protein [Zea mays] 831 0.0
>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1171 bits (3030), Expect = 0.0
Identities = 672/1643 (40%), Positives = 932/1643 (55%), Gaps = 137/1643 (8%)
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE------GAVKA 57
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 58 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKET 117
+ W+ +E L NSKA L + ++ CT AK+ W+ LKI HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMS 125
Query: 118 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRP 177
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 178 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQE 237
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK K LA ++ DE ++
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 237
Query: 238 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 283
+L+ +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 238 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 294
Query: 284 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 343
K + C+GC GH ECP K RK + +ESDS D + G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 351
Query: 344 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 403
++D + D E D L L + ++++ +++K
Sbjct: 352 FETAEDSSDT----------DSEITFDELAASYRKLCIKSEKILQQEAQLK--------- 392
Query: 404 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGF 463
K++ D + + EI SE++ E L ++ET+KK +
Sbjct: 393 --------KVIADLEAEKEAHEEEI-----------SELKGEVGFLNSKLETMKKSIKML 433
Query: 464 IKSTETFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRVKCCFCDKYGHNESICHV 523
K ++T ++ + + GLGF PK R
Sbjct: 434 NKGSDTLDEVLLLGKNAGNQRGLGFN----------PKFAGRT----------------T 467
Query: 524 KKKFIKQNNLYLSSERSHLNRSESSQ--KAEKAKKTCFYCNKSDHKR------------- 568
+F+ N ++ HL+R +Q K+++ K C YC K H +
Sbjct: 468 MTEFVPAKNRTGTTMSQHLSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG 527
Query: 569 -QNVTFRKDLLEELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNC 627
Q+ RK ++ K +L + + + + WYLDSGCSRHMTG +
Sbjct: 528 TQSSNSRKKMMWVPKHKAVSLVVHTSL---------RASAKEDWYLDSGCSRHMTGVKEF 578
Query: 628 FLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGF 687
L E VTFG+ KGKI G G + + + V V+GL NL+SISQLCD GF
Sbjct: 579 LLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGF 638
Query: 688 EVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMP-AEFCFMSLEKDKWIWHKRAGH 746
V F + C V S L + N Y+ + + C S E + IWH+R GH
Sbjct: 639 NVNFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGH 698
Query: 747 ISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHID 806
+ ++ + K+ VRG+P + E+ +IC C GKQVK S + + +T + LELLH+D
Sbjct: 699 LHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLRHQTTSRVLELLHMD 758
Query: 807 LFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITV 866
L P+Q SL GKRY +V+VDDFSRFTWV F++ K E+FE F+ R+Q EK I +
Sbjct: 759 LMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKELSLRLQREKDCVIKRI 818
Query: 867 RSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVEN 926
RSDHG EFEN+ F F GI H FS A TPQQNG+VERKNRTLQE AR ML+ +
Sbjct: 819 RSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPY 878
Query: 927 YFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKF 986
WAEA+NT+CYI NRV++R+ T YE+WK KPS+ +FHIFG CYIL ++E+ K
Sbjct: 879 NLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKM 938
Query: 987 DPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENEDTEAPTL-QN 1045
DPKSD IFLGYST S+ YRV+N +T+TV S++++ D+ K ED TL N
Sbjct: 939 DPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVR--TLGDN 996
Query: 1046 VPV-----QNTENTVEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSF 1100
V +N EN+ D+ N+ +S R +M HP + IIG GV TR
Sbjct: 997 VADAAKSGENAENSDSATDESNINQPDKRSSTRIQKM---HPKELIIGDPNRGVTTRSRE 1053
Query: 1101 QD--NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRW 1158
+ +N +S++EPK++ EA+ D+ WI M+EEL QF+RN+VW LVP + +IGT+W
Sbjct: 1054 VEIVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKW 1113
Query: 1159 VFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLF 1218
+F+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARLE+IR+LL A KL+
Sbjct: 1114 IFKNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLY 1173
Query: 1219 QMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLI 1278
QMDVKSAFLNG+LNEEVYV QP GF + P+HV++L KALYGLKQAPRAWY+RL+ FL
Sbjct: 1174 QMDVKSAFLNGYLNEEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLT 1233
Query: 1279 ENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGE 1338
+ G+ +G ID TLF K +L+I Q+YVDDI+FG +M F MQSEFEMS++GE
Sbjct: 1234 QQGYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGE 1293
Query: 1339 LGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISE 1398
L +FLGLQ+KQ + IF+SQ +Y K+I+KK+ M A TP L KDE+G S+ +
Sbjct: 1294 LTYFLGLQVKQMEDSIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQ 1353
Query: 1399 KEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYR 1458
YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHLT VKRI +Y+ GT+D G+ Y
Sbjct: 1354 SLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYC 1413
Query: 1459 KGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAA 1518
S+ LV YCDAD+AG +RKSTSG C +LG LI W +KQN + LST EAEY++A
Sbjct: 1414 HCSNPMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAG 1473
Query: 1519 SCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQ 1578
S CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QHSR+KHI+I+HH+IRD V
Sbjct: 1474 SSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVD 1533
Query: 1579 KKNIALSFVDTENQLADIFTKPL 1601
K I L VDTE Q+ADIFTK L
Sbjct: 1534 DKVITLKHVDTEEQIADIFTKAL 1556
>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
Length = 1574
Score = 1167 bits (3019), Expect = 0.0
Identities = 664/1629 (40%), Positives = 928/1629 (56%), Gaps = 111/1629 (6%)
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE------GAVKA 57
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 58 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKET 117
+ W+ +E L NSKA L + ++ CT AK+ W+ LKI HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKIS 125
Query: 118 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRP 177
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 178 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQE 237
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK K LA ++ D E
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN---------DEGE 235
Query: 238 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 283
E + +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 236 EDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKKS-DVKP 294
Query: 284 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 343
K + C+GC GH ECP K RK + +ESDS D + G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALTGI 351
Query: 344 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 403
++D + ++ + +L L S + + L K +++++ EKE + +
Sbjct: 352 FETAEDSSDT---DSEITFDELATSYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 408
Query: 404 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGF 463
E + + L +M++ + +N+ S+ E +LL K + + GF
Sbjct: 409 ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRGL--GF 458
Query: 464 IKSTE---TFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 519
+ T V ++N + + S+ G K+K + +C +C KYGH +
Sbjct: 459 NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 515
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 579
C+ HL+ +Q + KK + HK ++ L
Sbjct: 516 FCY------------------HLHPHHGTQSSNSRKKMMWV---PKHKAVSLVVHTSL-- 552
Query: 580 ELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFLTFEKKDGGLV 639
+ + + WYLDSGCSRHMTG + L E V
Sbjct: 553 ------------------------RASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYV 588
Query: 640 TFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVR 699
TFG+ KGKI G G + + + V V+GL NL+SISQLCD GF V F + C V
Sbjct: 589 TFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVT 648
Query: 700 QASSNKLFFSGSRRKNLYVLELNDMP-AEFCFMSLEKDKWIWHKRAGHISMKTIAKLSQL 758
S L + N Y+ + + C S E + IWH+R GH+ ++ + K+
Sbjct: 649 NEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKIIDK 708
Query: 759 DLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTG 818
VRG+P + E+ +IC C GKQVK S + ++ +T + LELLH+DL P+Q SL G
Sbjct: 709 GAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 768
Query: 819 KRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENAS 878
KRY +V+VDDFSRFTWV F++ K E+FE F+ R+Q EK I +RSDHG EFEN+
Sbjct: 769 KRYAYVVVDDFSRFTWVKFIREKSETFEVFKELSLRLQREKDCVIKRIRSDHGREFENSR 828
Query: 879 FKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCY 938
F GI H FS A TPQQNG+VERKNRTLQE AR ML+ + WAEA+NT+CY
Sbjct: 829 LTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 888
Query: 939 ILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGY 998
I NRV++R+ T YE+WK KPS+ +FHIFG CYIL ++E+ K DPKSD IFLGY
Sbjct: 889 IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGY 948
Query: 999 STTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENED--TEAPTLQNVPV--QNTENT 1054
ST S+ YRV+N +T+TV S++++ D+ K ED T + + +N EN+
Sbjct: 949 STNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENS 1008
Query: 1055 VEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQME 1112
D+ N+ +S R +M HP + IIG GV TR + +N +S++E
Sbjct: 1009 DSATDESNINQPDKRSSTRIQKM---HPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIE 1065
Query: 1113 PKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1172
PK++ EA+ D+ WI M+EEL QF+RN+VW LVP + +IGT+W+F+NK +EEG + R
Sbjct: 1066 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 1125
Query: 1173 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1232
NKARLVAQGY Q EG+D+DETFAPVARLE+IR+LL A KL+QMDVKSAFLNG+LN
Sbjct: 1126 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 1185
Query: 1233 EEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLF 1292
EEVYV QP GF + P+HV++L KALYGLKQAPRAWY+RL+ FL + G+ +G ID TLF
Sbjct: 1186 EEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLF 1245
Query: 1293 RKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSN 1352
K +L+I Q+YVDDI+FG +M F MQSEFEMS++GEL +FLGLQ+KQ +
Sbjct: 1246 VKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED 1305
Query: 1353 GIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLT 1412
IF+SQ +Y K+I+KK+ M A TP L KDE+G S+ + YR MIGSLLYLT
Sbjct: 1306 SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLT 1365
Query: 1413 ASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDAD 1472
ASRPDI +AVG+CAR+Q K SHLT VKRI +Y+ GT+D G+ Y S+ LV YCDAD
Sbjct: 1366 ASRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDAD 1425
Query: 1473 YAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLE 1532
+AG +RKSTSG C +LG LI W +KQN + LST EAEY++A S CSQ++W++ L+
Sbjct: 1426 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 1485
Query: 1533 DYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQ 1592
+Y++ + +YCDN SAIN+SKNP+QHSR+KHI+I+HH+IRD V K I L VDTE Q
Sbjct: 1486 EYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQ 1545
Query: 1593 LADIFTKPL 1601
+ADIFTK L
Sbjct: 1546 IADIFTKAL 1554
>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1161 bits (3003), Expect = 0.0
Identities = 664/1629 (40%), Positives = 932/1629 (56%), Gaps = 109/1629 (6%)
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE------GAVKA 57
EGG NRPP+ DGSNY +WK +M FL+S D+ W + G P + +K
Sbjct: 6 EGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKP 65
Query: 58 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKET 117
+ W+ +E L NSKA L + ++ CT AK+ + LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMS 125
Query: 118 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRP 177
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDM 185
Query: 178 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQE 237
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK K LA ++ DE ++
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRAEKKSKNLAFVSN-------DEGEED 237
Query: 238 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRK--------------KFPKTNISIKT 283
+L+ +E + + L+ K+ +++ R ++ +K K+ K + +K
Sbjct: 238 EYDLDT--DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGSKYQKRS-DVKP 294
Query: 284 EADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGL 343
K + C+GC GH ECP K RK + +ESDS D + +G+
Sbjct: 295 SHSKG-IQCHGCEGYGHIIAECPTHLKKHRKG--LSVCQSDTESEQESDSDRDVNALIGI 351
Query: 344 MAQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNK 403
++D + ++ + +L L S + + L K +++++ EKE + +
Sbjct: 352 FETAEDSSDT---DSEITFDELAASYRKLCIKSEKILQQEAQLKKVIADLEAEKEAHKEE 408
Query: 404 YDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGF 463
E + + L +M++ + +N+ S+ E +LL K + + GF
Sbjct: 409 ISELKGEVGFLNSKLENMTKSIKMLNKG--------SDTLDEVLLLGKNAGNQRGL--GF 458
Query: 464 IKSTE---TFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNES 519
+ T V ++N + + S+ G K+K + +C +C KYGH +
Sbjct: 459 NPKSAGRTTMTEFVPAKNRTGATMS---QHRSRHHGMQQKKSKRKKWRCHYCGKYGHIKP 515
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLE 579
C+ +L H +S +S +K + K HK ++ L
Sbjct: 516 FCY-----------HLHGHPHHGTQSSNS------RKKMMWVPK--HKAVSLVVHTSL-- 554
Query: 580 ELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFLTFEKKDGGLV 639
+ + + WYLDSGCSRHMTG + L E V
Sbjct: 555 ------------------------RASAKEDWYLDSGCSRHMTGVKEFLLNIEPCSTSYV 590
Query: 640 TFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVR 699
TFG+ KGKI G G + + + V V+GL NL+SISQLCD GF V F + C V
Sbjct: 591 TFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVT 650
Query: 700 QASSNKLFFSGSRRKNLYVLELNDMP-AEFCFMSLEKDKWIWHKRAGHISMKTIAKLSQL 758
S L + N Y+ + + C S E + IWH+R GH+ ++ + K+
Sbjct: 651 NEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVRIWHQRFGHLHLRGMKKILDK 710
Query: 759 DLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTG 818
VRG+P + E+ +IC C GKQVK S + ++ +T + LELLH+DL P+Q SL G
Sbjct: 711 SAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLMGPMQVESLGG 770
Query: 819 KRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENAS 878
KRY +V+VDDFSRFTWV F++ K +FE F+ R+Q EK I +RSDHG EFEN+
Sbjct: 771 KRYAYVVVDDFSRFTWVNFIREKSGTFEVFKKLSLRLQREKDCVIKRIRSDHGREFENSR 830
Query: 879 FKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCY 938
F F GI H FS A TPQQNG+VERKNRTLQE AR ML+ + WAEA+NT+CY
Sbjct: 831 FTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACY 890
Query: 939 ILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGY 998
I NRV++R+ T YE+WK KPS+ +FHIFG CYIL ++E+ K DPKSD IFLGY
Sbjct: 891 IHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIFGSPCYILADREQRRKMDPKSDAGIFLGY 950
Query: 999 STTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENED--TEAPTLQNVPV--QNTENT 1054
ST S+ YRV+N +T+TV S++++ D+ K ED T + + +N EN+
Sbjct: 951 STNSRAYRVFNSRTRTVMESINVVVDDLSPARKKDVEEDVRTSGDNVADAAKSGENAENS 1010
Query: 1055 VEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQME 1112
D+ N+ +S R +M HP + IIG GV TR + +N +S++E
Sbjct: 1011 DSATDESNINQPDKRSSTRIQKM---HPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIE 1067
Query: 1113 PKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVR 1172
PK++ EA+ D+ WI M+EEL QF+RN+VW LVP + +IGT+W+F+NK +EEG + R
Sbjct: 1068 PKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITR 1127
Query: 1173 NKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLN 1232
NKARLVAQGY Q EG+D+DETFAPVARLE+IR+LL A KL+QMDVKSAFLNG+LN
Sbjct: 1128 NKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLN 1187
Query: 1233 EEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLF 1292
EEVYV QP GF + P+HV++L KALYGLKQAPRAWY+RL+ FL + G+ +G ID TLF
Sbjct: 1188 EEVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLF 1247
Query: 1293 RKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSN 1352
K +L+I Q+YVDDI+FG +M F MQSEFEMS++GEL +FLGLQ+KQ +
Sbjct: 1248 VKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMED 1307
Query: 1353 GIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLT 1412
IF+SQ +Y K+I+KK+ M A TP L KDE+G S+ +K YR MIGSLLYLT
Sbjct: 1308 SIFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIGSLLYLT 1367
Query: 1413 ASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDAD 1472
ASRPDI +AVG+CAR+Q K SHL VKRI +Y+ GT+D G+ Y SS LV YCDAD
Sbjct: 1368 ASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVGYCDAD 1427
Query: 1473 YAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLE 1532
+AG +RKSTSG C +LG LI W +KQN + LST EAEY++A S CSQ++W++ L+
Sbjct: 1428 WAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLK 1487
Query: 1533 DYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQ 1592
+Y++ + +YCDN SAIN+SKNP+QHSR+KHI+I+HH+IRD V K I L VDTE Q
Sbjct: 1488 EYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLKHVDTEEQ 1547
Query: 1593 LADIFTKPL 1601
+ADIFTK L
Sbjct: 1548 IADIFTKAL 1556
>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
Length = 1577
Score = 1159 bits (2998), Expect = 0.0
Identities = 661/1641 (40%), Positives = 930/1641 (56%), Gaps = 132/1641 (8%)
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE------GAVKA 57
EGG NRPP+ DG+NY +WK +M FL+S D+ W + G P + +K
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKP 65
Query: 58 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKET 117
+ W+ +E L NSKA L + ++ CT AK+ W+ LK HEGTS VK +
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMS 125
Query: 118 RIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRP 177
R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 RLQLLATKFENLKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDM 185
Query: 178 MVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQE 237
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK K LA ++ DE ++
Sbjct: 186 KVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRTEKKSKNLAFVSN-------DEGEED 237
Query: 238 PQELEEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISI----------KTEADK 287
+L+ +E + + + K+ +++ R ++ R+K NIS+ K++
Sbjct: 238 EYDLDT--DEGLTNAVVFLGKQFNKVLNRMDR-RQKPHVRNISLDIRKGSEYQRKSDEKP 294
Query: 288 SQ---VTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLM 344
S + C GC GH K ECP K QRK + D ES+ + D+D D+ +
Sbjct: 295 SHSKGIQCRGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVNAL 349
Query: 345 A--------QSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLI-------KE 389
SD + E+ + Y++L K + +L L +L +E
Sbjct: 350 TGRFESAEDSSDTDSEITFDELAIFYRELCIKSEKILQQEAQLKKVIANLEAEKEAHEEE 409
Query: 390 LSEIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILL 449
+S++K E L +K + K+IK+L DM ++ ++ +K V + L
Sbjct: 410 ISKLKGEVGFLNSKLENMTKSIKMLNKGS-DMLDZVLQLGKK----------VGNQRGLG 458
Query: 450 KKEVETLKKVLTGFIKSTETFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRVKCC 509
+ +T F+ + +N G+ + G + + + +C
Sbjct: 459 FNHKSAGRTTMTEFVPA----KNSTGATMSQHRSRHHGTQQKRS--------KRKKWRCH 506
Query: 510 FCDKYGHNESICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQ 569
+C KYGH + C+ H + +Q + +K + HK
Sbjct: 507 YCGKYGHIKPFCY----------------HLHGHPHHGTQGSSSGRKMMWV---PKHKIV 547
Query: 570 NVTFRKDLLEELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFL 629
++ L + + + WYLDSGCSRHMTG + +
Sbjct: 548 SLVVHTSL--------------------------RASAKEDWYLDSGCSRHMTGVKEFLV 581
Query: 630 TFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFEV 689
E VTFG+ KGKI G G + + + V V+GL NL+SISQLCD GF V
Sbjct: 582 NIEPCSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVNLISISQLCDEGFNV 641
Query: 690 IFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMP-AEFCFMSLEKDKWIWHKRAGHIS 748
F + C V S L + N Y+ + + C S E + IWH+R GH+
Sbjct: 642 NFTKSECLVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSKEDEVKIWHQRFGHLH 701
Query: 749 MKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLF 808
++ + K+ VRG+P + E+ +IC C GKQVK S + ++ +T + LELLH+DL
Sbjct: 702 LRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSRVLELLHMDLM 761
Query: 809 APVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRS 868
P+Q SL GKRY +V+VDDFSRFTWV F++ K ++FE F+ R+Q EK I +RS
Sbjct: 762 GPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRS 821
Query: 869 DHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYF 928
DHG EFEN+ F F GI H FS A TPQQNG+VERKNRTLQE AR ML+ +
Sbjct: 822 DHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLHAKELPYNL 881
Query: 929 WAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDP 988
WAEA+NT+CYI NRV++R+ T YE+WK KP++ +FHIFG CYIL ++E+ K DP
Sbjct: 882 WAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDP 941
Query: 989 KSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENEDTE------APT 1042
KSD IFLGYST S+ YRV+N +T+TV S++++ D+ K ED A T
Sbjct: 942 KSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSGDNVADT 1001
Query: 1043 LQNVPVQNTENTVEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQD 1102
++ +N EN+ D+ N+ + R +M HP + IIG GV TR +
Sbjct: 1002 AKSA--ENAENSDSATDEPNINQPDKRPSIRIQKM---HPKELIIGDPNRGVTTRSREIE 1056
Query: 1103 --NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVF 1160
+N +S++EPK++ EA+ D+ WI M+EEL QF+RN+VW LVP + +IGT+W+F
Sbjct: 1057 IVSNSCFVSKIEPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIF 1116
Query: 1161 RNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQM 1220
+NK +EEG + RNKARLVAQGY Q EG+D+DETFAPVARLE+IR+LL A KL+QM
Sbjct: 1117 KNKTNEEGVITRNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQM 1176
Query: 1221 DVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIEN 1280
DVKSAFLNG+LNEE YV QP GF++ P+HV++L KALYGLKQAPRAWY+RL+ FL +
Sbjct: 1177 DVKSAFLNGYLNEEAYVEQPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQ 1236
Query: 1281 GFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELG 1340
G+ +G ID TLF K +L+I Q+YVDDI+FG +M F MQSEFEMS++GEL
Sbjct: 1237 GYRKGGIDKTLFVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELT 1296
Query: 1341 FFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKE 1400
+FLGLQ+KQ + IF+SQ KY K+I+KK+ M A TP L KDE+G S+ +
Sbjct: 1297 YFLGLQVKQMEDSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSL 1356
Query: 1401 YRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKG 1460
YR MIGSLLYLTASRPDI +AVG+CAR+Q K SHL VKRI +Y+ GT+D G+ Y
Sbjct: 1357 YRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHC 1416
Query: 1461 SSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASC 1520
S LV YCDAD+AG +RKSTSG C +LG LI W +KQN + LST EAEY++A S
Sbjct: 1417 SGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEAEYIAAGSS 1476
Query: 1521 CSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKK 1580
CSQ++W++ L++Y++ + +YCDN SAIN+SKNP+QHSR+KHI+I+HH+IR+ V K
Sbjct: 1477 CSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHYIRELVDDK 1536
Query: 1581 NIALSFVDTENQLADIFTKPL 1601
I L VDTE Q+ADIFTK L
Sbjct: 1537 VITLEHVDTEEQIADIFTKAL 1557
>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
Length = 1576
Score = 1139 bits (2946), Expect = 0.0
Identities = 650/1630 (39%), Positives = 916/1630 (55%), Gaps = 111/1630 (6%)
Query: 4 EGGSSNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKE------GAVKA 57
EGG NRPP+ DG+NY +WK +M FL+S D+ W + G P + +K
Sbjct: 6 EGGPVNRPPILDGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKP 65
Query: 58 KSAWSTDEKAQVLLNSKARLFLSCALTMEESERVDECTNAKEVW-DTLKIHHEGTSHVKE 116
+ W+ +E L NSKA L + ++ CT AK+ + LK HEGTS VK
Sbjct: 66 EEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKM 125
Query: 117 TRIDIGVRKFEVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWR 176
+R+ + KFE +M E E I + + I N +LG+ + +RKILR LP +
Sbjct: 126 SRLQLLATKFENLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFD 185
Query: 177 PMVTAITQAKDLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQ 236
VTAI +A+D+ +M +++LIGSL+ E+ L D+ KK K LA ++ DE +
Sbjct: 186 MKVTAIEEAQDICNMRVDELIGSLQTFELGLS-DRNEKKSKNLAFVSN-------DEGEE 237
Query: 237 EPQELEEVHEEEAEDELALISKRIQRMMLRRNQ------------IRKKFPKTNISIKTE 284
+ +L+ +E + + L+ K+ +++ R ++ IRK S +
Sbjct: 238 DEYDLDT--DEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKP 295
Query: 285 ADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLM 344
+ + C+GC GH K ECP K QRK + D ES+ + D+D D+ +
Sbjct: 296 SHSKGIQCHGCEGYGHIKAECPTHLKKQRKG-----LSVCRSDDTESEQESDSDRDVNAL 350
Query: 345 AQSDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKY 404
+ +E DS D+E D L L + ++++ +++K
Sbjct: 351 TGRFESDE------DS--SDIEITFDELAISYRKLCIKSEKILQQEAQLK---------- 392
Query: 405 DESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFI 464
K++ + + + EI SE++ E L ++E + K +
Sbjct: 393 -------KVIANLEAEKEAHEEEI-----------SELKGEVGFLNSKLENMTKSIKMLN 434
Query: 465 KSTETFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRVKCCFCDKYGHNESICHVK 524
K ++ ++ + GLGF +++S C +
Sbjct: 435 KGSDMLDEVLQLGKNVGNQRGLGF---------------------------NHKSACRIT 467
Query: 525 K-KFIKQNNLYLSSERSHLNRSESSQ--KAEKAKKTCFYCNKSDHKRQNVTFRKDLLEEL 581
+F+ N ++ H +R +Q K+++ K C YC K H +
Sbjct: 468 MTEFVPAKNSTGATMSQHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCYHLHGHPHHG 527
Query: 582 TLKDPTLHGYL-----KFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFLTFEKKDG 636
T + + K +S + + + + WYLDSGCSRHMTG + + E
Sbjct: 528 TQSSSSGRKMMWVPKHKIVSLVVHTSLRASAKEDWYLDSGCSRHMTGVKEFLVNIEPCST 587
Query: 637 GLVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNIC 696
VTFG+ KGKI G G + + + V V+GL NL+SISQLCD GF V F + C
Sbjct: 588 SYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSEC 647
Query: 697 EVRQASSNKLFFSGSRRKNLYVLELNDMP-AEFCFMSLEKDKWIWHKRAGHISMKTIAKL 755
V S L + N Y+ + + C S E + IWH+R GH+ ++ + K+
Sbjct: 648 LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLSSKEDEVKIWHQRFGHLHLRGMKKI 707
Query: 756 SQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTAS 815
VRG+P + E+ +IC C GKQVK S + ++ +T LELLH+DL P+Q S
Sbjct: 708 IDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQHQTTSMVLELLHMDLMGPMQVES 767
Query: 816 LTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFE 875
L GKRY +V+VDDFSRFTWV F++ K ++FE F+ R+Q EK I +RSDHG EFE
Sbjct: 768 LGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFE 827
Query: 876 NASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINT 935
N+ F F GI H FS A TPQQNG+VERKNRTLQE R ML+ + WAEA+NT
Sbjct: 828 NSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEATRVMLHAKELPYNLWAEAMNT 887
Query: 936 SCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIF 995
+CYI NRV++R+ T YE+WK KP++ +FHIFG CYIL ++E+ K DPKSD IF
Sbjct: 888 ACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSPCYILADREQRRKMDPKSDAGIF 947
Query: 996 LGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPKENEDTEAPTLQNVPVQNTENTV 1055
LGYST S+ YRV+N +T+TV S++++ D+ K ED +
Sbjct: 948 LGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARKKDVEEDVRTSEDNVADTAKSAENA 1007
Query: 1056 EKEDDQNVQDQSLQSPPRS--WRMVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQM 1111
EK D + ++ P +S R+ P + IIG GV TR + +N +S++
Sbjct: 1008 EKSDS-TTDEPNINQPDKSPFIRIQKMQPKELIIGDPNRGVTTRSREIEIVSNSCFVSKI 1066
Query: 1112 EPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVV 1171
EPK++ EA+ D+ WI M+EEL QF+RN+VW LVP + +IGT+W+F+NK +EEG +
Sbjct: 1067 EPKNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVIT 1126
Query: 1172 RNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFL 1231
RNKARLVAQGY Q EG+D+DETFAPVARLE+IR+LL A KL+QMDVKSAFLNG+L
Sbjct: 1127 RNKARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYL 1186
Query: 1232 NEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTL 1291
NEE YV QP GF++ +HV++L KALYGLKQAPRAWY+RL+ FL + G+ +G ID TL
Sbjct: 1187 NEEAYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTL 1246
Query: 1292 FRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHS 1351
F K +L+I Q+YVDDI+FG +M F MQSEFEMS++GEL +FLGLQ+KQ
Sbjct: 1247 FVKQDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGLQVKQME 1306
Query: 1352 NGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYL 1411
+ IF+SQ KY K+I+KK+ M A TP L KDE+G S+ + YR MIGSLLYL
Sbjct: 1307 DSIFLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMIGSLLYL 1366
Query: 1412 TASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDA 1471
TASRPDI FAVG+CAR+Q K SHL VKRI +Y+ GT+D G+ Y S LV YCDA
Sbjct: 1367 TASRPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDA 1426
Query: 1472 DYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQL 1531
D+AG +RK TSG C +LG LI W +KQN + LST EAEY++A S CSQ++W++ L
Sbjct: 1427 DWAGSADDRKCTSGGCFYLGTNLISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQML 1486
Query: 1532 EDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTEN 1591
++Y++ + +YCDN SAIN+SKNP+QH+R+KHI+I+HH+IRD V K I L VDTE
Sbjct: 1487 KEYNVEQDVMTLYCDNMSAINISKNPVQHNRTKHIDIRHHYIRDLVDDKIITLEHVDTEE 1546
Query: 1592 QLADIFTKPL 1601
Q+ADIFTK L
Sbjct: 1547 QVADIFTKAL 1556
>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
Length = 1550
Score = 1117 bits (2889), Expect = 0.0
Identities = 648/1615 (40%), Positives = 911/1615 (56%), Gaps = 124/1615 (7%)
Query: 26 MELFLRSQDNDMWAVITDGDFVPTTKE------GAVKAKSAWSTDEKAQVLLNSKARLFL 79
M FL+S D+ W + G P + +K + W+ +E L NSKA L
Sbjct: 1 MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 60
Query: 80 SCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDE 139
+ ++ CT AK+ W+ LK HEGTS VK +R+ + KFE +M E E I E
Sbjct: 61 FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHE 120
Query: 140 MYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDLKSMNLEDLIGS 199
+ I N +LG+ + +RKILR LP + VTAI +A+D+ +M +++LIGS
Sbjct: 121 FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 180
Query: 200 LRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVHEEEAEDELALISKR 259
L+ E+ L D+ KK K LA ++ DE ++ +L+ +E + + L+ K+
Sbjct: 181 LQTFELGLS-DRTEKKSKNLAFVSN-------DEGEEDEYDLDT--DEGLTNAVVLLGKQ 230
Query: 260 IQRMMLRRNQ------------IRKKFPKTNISIKTEADKSQVTCYGCNKTGHFKNECPD 307
+++ R ++ IRK S + + + C+GC GH K ECP
Sbjct: 231 FNKVLNRMDRRQKPHVRNIPFDIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPT 290
Query: 308 IKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMA--------QSDDEEEVIIYKTD 359
K QRK + D ES+ + D+D D+ + SD + E+ +
Sbjct: 291 HLKKQRKG-----LSVCRSDDTESEQESDSDRDVNALTGRFESAEDSSDTDSEITFDELA 345
Query: 360 SLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDESRKTIKILQDSHF 419
Y++L K + +L L K ++ ++ EKE +++ E + I L
Sbjct: 346 ISYRELCIKSEKILQQEA-------QLKKVIANLEAEKEAHEDEISELKGEIGFLNSKLE 398
Query: 420 DMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKSTE---TFQNIVGS 476
+M++ + +N+ S++ E + L K V + + GF + T V +
Sbjct: 399 NMTKSIKMLNKG--------SDLLDEVLQLGKNVGNQRGL--GFNHKSAGRTTMTEFVPA 448
Query: 477 QNESTKKSGLGFKDPSKIIGSFVPKAKIRV-KCCFCDKYGHNESICHVKKKFIKQNNLYL 535
+N + + S+ G+ K+K + +C +C KYGH + C+ +L
Sbjct: 449 KNSTGATMS---QHRSRHHGTQQKKSKRKKWRCHYCGKYGHIKPFCY-----------HL 494
Query: 536 SSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLEELTLKDPTLHGYLKFL 595
H +S SS +K + HK ++ L
Sbjct: 495 HGHPHHGTQSSSS-----GRKMMWV---PKHKTVSLVVHTSL------------------ 528
Query: 596 SCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFLTFEKKDGGLVTFGNNDKGKIRGKGTI 655
+ + + WYLDSGCSRHMTG + + E VTFG+ KGKI G G +
Sbjct: 529 --------RASAKEDWYLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKL 580
Query: 656 GNLNSAKIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKN 715
+ + V V+GL NL+SISQLCD GF V F + C V S L + N
Sbjct: 581 VHDGLPSLNKVLLVKGLTANLISISQLCDEGFNVNFTKSECLVTNEKSEVLMKGSRSKDN 640
Query: 716 LYVLELNDMP-AEFCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKI 774
Y+ + + C S E + IWH+R GH+ ++ + K+ VRG+P + E+ +I
Sbjct: 641 CYLWTPQETSYSSTCLFSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRI 700
Query: 775 CEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTW 834
C C GKQVK S + ++ +T + LELLH+DL P+Q SL KRY +V+VDDFSRFTW
Sbjct: 701 CGECQIGKQVKMSNQKLQHQTTSRVLELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTW 760
Query: 835 VLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSC 894
V F++ K ++FE F+ R+Q EK I +RSDHG EFEN+ F F GI H FS
Sbjct: 761 VNFIREKSDTFEVFKELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSA 820
Query: 895 ARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPY 954
A TPQQNG+VERKNRTLQE AR ML+ + WAEA+NT+CYI NRV++R+ T Y
Sbjct: 821 AITPQQNGIVERKNRTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLY 880
Query: 955 ELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQT 1014
E+WK KP++ +FHI G CYIL ++E+ K DPKSD IFLGYST S+ YRV+N +T+T
Sbjct: 881 EIWKGRKPTVKHFHICGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRT 940
Query: 1015 VEISMHIIFDEYDEHSKPKENEDTE------APTLQNVPVQNTENTVEKEDDQNVQDQSL 1068
V S++++ D+ K ED A T ++ +N EN+ D+ N+
Sbjct: 941 VMESINVVVDDLTPARKKDVEEDVRTSGDNVADTAKSA--ENAENSDSATDEPNINQPDK 998
Query: 1069 QSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWI 1126
+ R +M HP + IIG GV TR + +N +S++EPK++ EA+ D+ WI
Sbjct: 999 RPSIRIQKM---HPKELIIGDPNRGVTTRSREIEIISNSCFVSKIEPKNVKEALTDEFWI 1055
Query: 1127 EVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQE 1186
M+EEL QF+RN+VW LVP + +IGT+W+F+NK +EEG + RNKARLVAQGY Q E
Sbjct: 1056 NAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQIE 1115
Query: 1187 GIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINK 1246
G+D+DETFAP ARLE+IR+LL A KL+QMDVKSAFLNG+LNEE YV QP GF++
Sbjct: 1116 GVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVDP 1175
Query: 1247 EKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVY 1306
P+HV++L KALYGLKQAPRAWY+RL+ FL + G+ +G ID TLF K +L+I Q+Y
Sbjct: 1176 THPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQIY 1235
Query: 1307 VDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDIL 1366
VDDI+FG +M F MQSEFEMS++GEL +FLGLQ+KQ + IF+SQ KY K+I+
Sbjct: 1236 VDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNIV 1295
Query: 1367 KKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCA 1426
KK+ M A TP L KDE+G S+ + YR MIGSLLYLTASRPDI +AVG CA
Sbjct: 1296 KKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGGCA 1355
Query: 1427 RFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGS 1486
R+Q K SHL VKRI +Y+ GT+D G+ Y S LV YCDAD+AG +RKST G
Sbjct: 1356 RYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSVDDRKSTFGG 1415
Query: 1487 CQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCD 1546
C +LG I W +KQN + LST EAEY++A S CSQ++W++ L++Y++ + +YCD
Sbjct: 1416 CFYLGTNFISWFSKKQNCVSLSTAEAEYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCD 1475
Query: 1547 NTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
N SAIN+SKNP+QHSR+KHI+I+HH+IRD V K I L VDTE Q+ADIFTK L
Sbjct: 1476 NLSAINISKNPVQHSRTKHIDIRHHYIRDLVDDKVITLEHVDTEEQIADIFTKAL 1530
>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
Length = 1643
Score = 1085 bits (2805), Expect = 0.0
Identities = 620/1669 (37%), Positives = 928/1669 (55%), Gaps = 137/1669 (8%)
Query: 13 LFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTK----EGAVKAKSAWSTDEKAQ 68
+ + NY WK KM +R + W + G P K E +K + W+ E+A+
Sbjct: 15 MLEKGNYGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQWTDAEEAK 74
Query: 69 VLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEV 128
NS+A + ++ + +R+ C +AKE WD L +EGTS VK +RID+ +FE
Sbjct: 75 ATANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQFEN 134
Query: 129 FEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDL 188
M E+E I+E + + I +E +LGK Y ++K+LRCLPS + TA+ + D
Sbjct: 135 LTMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSLDT 194
Query: 189 KSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVHEEE 248
+++ E+++G L+A+E+ + K K +AL S + + +E
Sbjct: 195 DTIDFEEVVGMLQAYELEITSGKGGYS-KGVALAVSSEKNEI----------------QE 237
Query: 249 AEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADK--------SQVTCYGCNKTGH 300
+D +++++K R M R + K+ N + D+ S++ C+ C GH
Sbjct: 238 LKDSMSMMAKNFSRAMKR---VEKRGFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGH 294
Query: 301 FKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMAQSDDEEEVIIYKTDS 360
K ECP +K+ K + T D S S+ D + SDDE+
Sbjct: 295 IKAECPSLKRKDLKCSECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSE------- 347
Query: 361 LYKDLENKID--SLLYDSNFLTNRCHSLI---KELSEIKEEKEILQNKYDESRKTIK--- 412
+D++ + ++ D N ++ S + KE +E ++ + E RK +
Sbjct: 348 --EDVKGFVSFVGIIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWL 405
Query: 413 -ILQDSHFDMSEKQR--EINRKQKGIMSVPSEVQKENIL-----------LKKEVETLKK 458
+ ++ + EK + E + KG ++V ++++ E IL L +++ +K
Sbjct: 406 VLSKEKVIWLEEKVKVQEQIEQLKGELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRK 465
Query: 459 VLTGFIKSTETFQNIVGSQNESTKKSGLGFKDPSKIIGSFVPKAKIRVKCCFCDKYGHNE 518
+ K T+ +I+ + GLG+ GS +R K + ++
Sbjct: 466 KIHMLNKGTKDLDSILAAGRVGKSNFGLGYHGG----GSSTKTNFVRSKAAAPTQ---SQ 518
Query: 519 SICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDH------------ 566
S+ K + Y + H R+ + + C+YC + H
Sbjct: 519 SVFRSKSNSVPARRKYQNQNHYHSQRTVTGYE-------CYYCGRHGHIQRYCYRYAARL 571
Query: 567 ---KRQNVTF-RKDLLEELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMT 622
KRQ + + ++ ++ L+ ++ + S + +G + KPWY DSG SRHMT
Sbjct: 572 SKLKRQGKLYPHQGRNSKMYVRREDLYCHVAYTS-----IAEGVK-KPWYFDSGASRHMT 625
Query: 623 GDRNCFLTFEKKDGGLVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQL 682
G + + V FG KG+I+GKG + + NV +VEGL NL+S+SQL
Sbjct: 626 GSQANLNNYSSVKESNVMFGGGAKGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVSQL 685
Query: 683 CDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPAEFCFMSLEKDKWIWHK 742
CD G V F C + N Y+ E + C + ++D +WH+
Sbjct: 686 CDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCYMWE----EPKICLRAEKEDPVLWHQ 741
Query: 743 RAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLEL 802
R GH++ ++++KL ++VRG+P++ + +C AC +GKQ++ K +E I T + L+L
Sbjct: 742 RLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQVLDL 801
Query: 803 LHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYN 862
+H+DL P+QT S+ GKRY FV+VDDFSR+ WV F++ K E+ +F+ +++NEK
Sbjct: 802 IHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNEKKMG 861
Query: 863 IITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNES 922
I +RSD GGEF N +F +F + GI H +S RTPQ NGVVERKNRTLQEMAR M++ +
Sbjct: 862 IKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAMIHGN 921
Query: 923 NVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEK 982
V FWAEAI+T+CY++NRV +R +KTPYE+WK KP++SYF +FGC CYI+N+K++
Sbjct: 922 GVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVCYIMNDKDQ 981
Query: 983 LGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKP------KENE 1036
LGKFD +S++ FLGY+T S YRV+N + +E SM+++FD+ S P +
Sbjct: 982 LGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDD---GSMPELQIIVRNRN 1038
Query: 1037 DTEAPTLQNVPVQNTENTVEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRT 1096
+ + N + +N + D ++S + P + ++ DH + IIG + T
Sbjct: 1039 EPQTSISNNHGEERNDNQFDNGDINKSGEESDEEVPPA-QVHRDHASKDIIGDPSGERVT 1097
Query: 1097 RLSFQDNNM-----------------------AMISQMEPKSINEAIIDDSWIEVMKEEL 1133
R QD +S +EPK++ EA+ D WI M+EEL
Sbjct: 1098 RGVKQDYRQLAGIKQKHRVMASFACFEEIMFSCFVSIVEPKNVKEALEDHFWILAMEEEL 1157
Query: 1134 SQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDET 1193
+F R++VW+LVP +IGT+W+F+NK DE G + RNKARLVAQGY Q EG+D+DET
Sbjct: 1158 EEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEVGNITRNKARLVAQGYTQVEGLDFDET 1217
Query: 1194 FAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVF 1253
FAPVARLE IR LL A KL QMDVK AFLNG + EEVYV QP GF N E P +V+
Sbjct: 1218 FAPVARLECIRFLLGTACGMGFKLHQMDVKCAFLNGIIEEEVYVEQPKGFENLEFPEYVY 1277
Query: 1254 KLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFG 1313
KL KALYGLKQAPRAWY+RL+TFLI G++RG +D TLF K ++I+Q+YVDDI+FG
Sbjct: 1278 KLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSVDKTLFVKNDVHGIIIIQIYVDDIVFG 1337
Query: 1314 ATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNE 1373
T K+ + F M +EF MSM+GEL +FLGLQI Q GI ISQ Y ++++K++ M
Sbjct: 1338 GTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQINQTDEGITISQSTYAQNLVKRFGMCS 1397
Query: 1374 AKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAK 1433
+K TPM ++ L KDE G + EK YRGMIGSLLYLTA+RPD+ +VGLCAR+Q+ K
Sbjct: 1398 SKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGSLLYLTATRPDLCLSVGLCARYQSNPK 1457
Query: 1434 ESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQA 1493
SHL AVKRI +Y+ GT + GL Y + +S LV YCDAD+ G+ +R+ST+G FLG
Sbjct: 1458 ASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVGYCDADWGGNLDDRRSTTGGVFFLGSN 1517
Query: 1494 LIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTS-VPIYCDNTSAIN 1552
LI W +KQN + LS+T++EY++ SCC+Q+LW+R DY + + + + CDN SAI
Sbjct: 1518 LISWHSKKQNCVSLSSTQSEYIALGSCCTQLLWMRQMGLDYGMTFPDPLLVKCDNESAIA 1577
Query: 1553 LSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
+SKNP+QHS +KHI I+HHF+R+ V++K I + V TE QL DIFTKPL
Sbjct: 1578 ISKNPVQHSVTKHIAIRHHFVRELVEEKQITVEHVPTEIQLVDIFTKPL 1626
>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
retrotransposon Opie-2
Length = 1068
Score = 1020 bits (2638), Expect = 0.0
Identities = 519/1039 (49%), Positives = 691/1039 (65%), Gaps = 50/1039 (4%)
Query: 611 WYLDSGCSRHMTGDRNCFLTFEK-KDG-GLVTFGNNDKGKIRGKGTIGNLNSAKIENVQY 668
W +DSGC+ HMTG++ F ++ K KD + FG+ ++GK++G G I N I NV
Sbjct: 11 WIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVFL 70
Query: 669 VEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPA-- 726
VE L +NLLS+SQLC+ G+ +F V + L F G LY+++ A
Sbjct: 71 VESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAGL 130
Query: 727 EFCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKS 786
+ C ++ W+WH+R H+ MK + KL + + V GL + FEKD+ C AC GKQV
Sbjct: 131 DACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQAGKQVGG 190
Query: 787 SFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFE 846
S T ++T +PLE+LH+DLF PV S+ G +YG VIVDDFSRFTWV FL+ K E+
Sbjct: 191 SHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQG 250
Query: 847 AFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVER 906
+ F +R QNE + +RSD+G EF+N + F +E GIKH FS TPQQNGVVER
Sbjct: 251 TLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVER 310
Query: 907 KNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISY 966
KNRTL +MARTML E FW EA+NT+C+ +NRV + ++L T YEL KP++SY
Sbjct: 311 KNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELLTGNKPNVSY 370
Query: 967 FHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE- 1025
F +FG CYIL K + KF PK+ + LGY + +K YRV+N + VE+S ++FDE
Sbjct: 371 FRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSGDVVFDET 430
Query: 1026 -------------YDEHS--------------KPKENEDTEAP---TLQNVPVQNTENTV 1055
DE +P+E ++ E P T+ + P Q+ E
Sbjct: 431 NGSPREQVVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHPPTQDDEQVH 490
Query: 1056 EKE--------DDQNVQDQSLQSPPRSWRMV--GDHPTDQIIGSTTDGVRTR---LSFQD 1102
++E DD +++++ +PP R + DHP DQI+G + GV TR ++F +
Sbjct: 491 QQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTRSRLVNFCE 550
Query: 1103 NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRN 1162
+N + +S +EP + EA++D W+ M+EEL+ F+RN+VW LVP + + ++GT+WVFRN
Sbjct: 551 HN-SFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRN 608
Query: 1163 KLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDV 1222
K DE G V RNKARLVA+GY Q G+D++ETFAPVARLE+IRILLAYAAH S +L+QMDV
Sbjct: 609 KQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSFRLYQMDV 668
Query: 1223 KSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGF 1282
KSAFLNG + EEVYV QPPGF ++ P+HV KL+KALYGLKQAPRAWY+ L FLI N F
Sbjct: 669 KSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAF 728
Query: 1283 SRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFF 1342
GK D TLF KT + DL + Q+YVDDIIFG+T K CEEFS +M +FEMSMMGEL +F
Sbjct: 729 KVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSMMGELNYF 788
Query: 1343 LGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYR 1402
LG Q+KQ +G FISQ KY +D+LK++ M +AK TPM D ++ GKS+ +K YR
Sbjct: 789 LGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYR 848
Query: 1403 GMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSS 1462
MIGSLLYL ASRPDI+ +V +CARFQ+ KE HL AVKRI RYLV T GLWY KGS+
Sbjct: 849 SMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGLWYPKGST 908
Query: 1463 FDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCS 1522
FDLV Y D+DYAG KV+RKSTSG+CQFLG++L+ W+ +KQ ++ LST EAEYV+A CC+
Sbjct: 909 FDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYVAAGQCCA 968
Query: 1523 QILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNI 1582
Q+LW+R L D+ + VP+ CDN SAI +++NP++HSR+KHI+I+HHF+RDH QK +I
Sbjct: 969 QLLWMRQTLRDFGYNLSKVPLLCDNESAIRMAENPVEHSRTKHIDIRHHFLRDHQQKGDI 1028
Query: 1583 ALSFVDTENQLADIFTKPL 1601
+ V TENQLADIFTKPL
Sbjct: 1029 EVFHVSTENQLADIFTKPL 1047
>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
(japonica cultivar-group)]
Length = 1877
Score = 1006 bits (2602), Expect = 0.0
Identities = 562/1309 (42%), Positives = 783/1309 (58%), Gaps = 95/1309 (7%)
Query: 363 KDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQN---KYDESRKTIKILQDSH- 418
KD + IDS+ S + C SL +L K+E LQ ++ + +K + ++ D
Sbjct: 577 KDAKTVIDSI--KSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKLNMILDQSK 634
Query: 419 ---------FDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKSTET 469
+D +E R + G+ E+ ++ I K GFI +T +
Sbjct: 635 VSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKS---------AGFIGNTSS 685
Query: 470 FQ------NIVGSQNESTKKSGLGFKDPSKIIGS-----FVPKAKIRVKCCFCDKYGHNE 518
+V ++S K+P ++ P K + +C +C K GH
Sbjct: 686 STPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLV 745
Query: 519 SICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSD---HKRQNVTFRK 575
C K + +Q L R+ + + + + ++C S R++V R+
Sbjct: 746 GFCFRKARKERQERL----------RTRRATRVPERFECAYHCRSSGVSRFPRRDVHPRR 795
Query: 576 DLLEELTLKDPTLHGYLKFLSCQM*VLPQGART---------KPWYLDSGCSRHMTGDRN 626
DL HG+L + S +RT W +DSGCSRHMTG+
Sbjct: 796 DLAG----LGQNRHGHLAYNSAHNTKDACTSRTDSDFGVGRSNSWLVDSGCSRHMTGEAK 851
Query: 627 CFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDS 685
F + + +TFG+ G++ KGTI + +++V V LK+NLLS+SQLCD
Sbjct: 852 WFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDE 911
Query: 686 GFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDM---PAEFCFMSLEKDKWIWHK 742
EV FK + V AS + +F SR ++ + P+ S +D + WH+
Sbjct: 912 NLEVRFKKDRSRVLDASESPVF-DISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHR 970
Query: 743 RAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLEL 802
R GHI ++++S +DL+RGLPK+ KD +C C GK SS K + + T P +L
Sbjct: 971 RLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQL 1030
Query: 803 LHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYN 862
LH+D P + S+ GK Y V+VDDFSR++WV FL+ K+E+F FQ+ + + E
Sbjct: 1031 LHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGA 1090
Query: 863 IITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNES 922
+ +RSD+G EF+N++F++F D +G++H FS PQQNGVVERKNRTL EMARTML+E
Sbjct: 1091 LRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEF 1150
Query: 923 NVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEK 982
FW EAI+ +C+I NRV +R +L+KTPYEL +P +S+ +FGC C++L +
Sbjct: 1151 TTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSGN- 1209
Query: 983 LGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPK--------- 1033
L KF+ +S IFLGY+T S+ YRVY L T + + + FDE ++P+
Sbjct: 1210 LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGARPEISGVPDESI 1269
Query: 1034 --------ENEDTEAPTLQNVP-VQNT--ENTVEKEDDQNVQDQSLQ-------SPPRSW 1075
+++D+ P L + P VQ T +T D S S P +
Sbjct: 1270 FVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAP 1329
Query: 1076 RMVGD-HPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAIIDDSWIEVMKEELS 1134
R + + HP D +IG + V S++ N A ++ EPK++ A+ D++W+ M EEL
Sbjct: 1330 RHIQNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHALSDENWVNAMHEELE 1389
Query: 1135 QFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETF 1194
FERNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQG+ Q EG+D++ETF
Sbjct: 1390 NFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETF 1449
Query: 1195 APVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFK 1254
APVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QPPGF N + PNHVFK
Sbjct: 1450 APVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFK 1509
Query: 1255 LTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGA 1314
L KALYGLKQAPRAWY+RL TFL++NGF G +D TLF D L+VQ+YVDDIIFG
Sbjct: 1510 LEKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGG 1569
Query: 1315 TKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEA 1374
+ + +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q KY K++LKK+ M +
Sbjct: 1570 SSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADC 1629
Query: 1375 KIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKE 1434
K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F+V LCARFQ +
Sbjct: 1630 KPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRT 1689
Query: 1435 SHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQAL 1494
SH AVKR+FRY+ T + G+WY S+ + A+ DAD+AG K++RKSTSG+C FLG +L
Sbjct: 1690 SHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSL 1749
Query: 1495 IGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLS 1554
+ WS RKQ+++ ST EAEYV+AAS CSQ+LW+ + L+DY L ++ VP+ CDNTSAIN++
Sbjct: 1750 VSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIA 1809
Query: 1555 KNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVR 1603
KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKPL R
Sbjct: 1810 KNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1858
Score = 135 bits (340), Expect = 1e-29
Identities = 145/610 (23%), Positives = 254/610 (40%), Gaps = 85/610 (13%)
Query: 8 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKA 67
S +P +FDG N+ WK +ME +L+SQ +++W + VP + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 68 QVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFE 127
QV N +AR + ++ E RV +A ++W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 128 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SVWRPMVTAITQAK 186
FEM E+ID + RF I++++RS+GK +S +D R +L CL VW VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 187 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVH- 245
L + ++ L L+ HE+ + K +K L S T S V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 246 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 299
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 300 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 346
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 347 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 406
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 407 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKS 466
+ DS D E+++++ + + E+ + K ++E LK G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 467 TETFQNIVGSQNE-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 519
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 576
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 551
Query: 577 LLEELTLKDP 586
LLE K+P
Sbjct: 552 LLESFATKEP 561
>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 1969
Score = 1001 bits (2587), Expect = 0.0
Identities = 555/1306 (42%), Positives = 774/1306 (58%), Gaps = 99/1306 (7%)
Query: 361 LYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYD--ESRKTIKILQDSH 418
L +L+ + ++D C L + E++++ +L+ K D ES T + + S
Sbjct: 507 LEMELKELKEKFVHDRIGRCENCPILTSDNDELRQQVAMLKTKNDLLESFATKEPIHSSC 566
Query: 419 FDMSEKQREINRKQKGIMSVPS-EVQKENILLKKEVETLKKVLTGFIKSTETFQN----- 472
+ + + E+ + I S+ S + I LK ++E+ KK + +S E F
Sbjct: 567 ANCAILETELKDAKTVIDSIKSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKL 626
Query: 473 --IVGSQNESTKKSGLGFK-------DPSKIIGSFVPKAKIRVKCCFCDKYGHNESICHV 523
I+ S G+G+ +I+G ++ K G +
Sbjct: 627 NMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSS 686
Query: 524 KKKFIKQNNLYLSSERS--------------HLNRSESSQKAEKAKKTCFYCNKSDHKRQ 569
K + + ++S+ H ++ EK K C YC K+ H
Sbjct: 687 TPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDF 746
Query: 570 NVTFRKDLLEELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFL 629
V R+ W +DSGCSRHMTG+ F
Sbjct: 747 GV----------------------------------GRSNSWLVDSGCSRHMTGEAKWFT 772
Query: 630 TFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFE 688
+ + G +TFG+ G++ KGTI + +++V V LK+NLLS+SQLCD E
Sbjct: 773 SLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLE 832
Query: 689 VIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDM---PAEFCFMSLEKDKWIWHKRAG 745
V FK + V AS + +F SR ++ + P+ S +D + WH+R G
Sbjct: 833 VRFKKDRSRVLDASESPVF-DISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLG 891
Query: 746 HISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHI 805
HI ++++S +DL+RGLPK+ +KD +C C GK SS K + + T P +LLH+
Sbjct: 892 HIGFDHLSRISGMDLIRGLPKLKVQKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHM 951
Query: 806 DLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIIT 865
D P + S+ GK Y V+VDDFSR++WV FL+ K+E+F FQ+ + + E +
Sbjct: 952 DTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRA 1011
Query: 866 VRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVE 925
+RSD+G EF+N++F++F D +G++H FS PQQNGVVERKNRTL EMARTML+E
Sbjct: 1012 IRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTP 1071
Query: 926 NYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGK 985
FW EAI+ +C+I NRV +R +L+KTPYEL +P +S+ +FGC C++L + L K
Sbjct: 1072 RKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSGN-LDK 1130
Query: 986 FDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPK------------ 1033
F+ +S IFLGY+T S+ YRVY L T + + + FDE ++P+
Sbjct: 1131 FESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGARPEISGVPDESIFVD 1190
Query: 1034 -----ENEDTEAPTLQNVP-VQNT--ENTVEKEDDQNVQDQSLQ-------SPPRSWRMV 1078
+++D+ P L + P VQ T +T D S S P + R +
Sbjct: 1191 EDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHI 1250
Query: 1079 GD-HPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFE 1137
+ HP D +IG + V S++ N A ++ EPK++ A+ D++W+ M EEL FE
Sbjct: 1251 QNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHALSDENWVNAMHEELENFE 1310
Query: 1138 RNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPV 1197
RNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQG+ Q EG+D++ETFAPV
Sbjct: 1311 RNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPV 1370
Query: 1198 ARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTK 1257
ARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QPPGF N + PNHVFKL K
Sbjct: 1371 ARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEK 1430
Query: 1258 ALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKI 1317
ALYGLKQAPRAWY+RL TFL++NGF G +D TLF D L+VQ+YVDDIIFG +
Sbjct: 1431 ALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSH 1490
Query: 1318 KMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIM 1377
+ +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q KY K++LKK+ M + K +
Sbjct: 1491 ALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPI 1550
Query: 1378 STPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHL 1437
+TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F+V LCARFQ + SH
Sbjct: 1551 ATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHR 1610
Query: 1438 TAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGW 1497
AVKRIFRY+ T + G+WY S+ + A+ DAD+AG K++RKSTSG+C FLG +L+ W
Sbjct: 1611 QAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSW 1670
Query: 1498 SCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNP 1557
S RKQ+++ ST EAEYV+AAS CSQ+LW+ + L+DY L ++ VP+ CDNTSAIN++KNP
Sbjct: 1671 SSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNP 1730
Query: 1558 IQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVR 1603
+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKPL R
Sbjct: 1731 VQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Score = 135 bits (341), Expect = 9e-30
Identities = 146/610 (23%), Positives = 254/610 (40%), Gaps = 85/610 (13%)
Query: 8 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKA 67
S +P +FDG N+ WK +ME +L+SQ +++W + VP + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 68 QVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFE 127
QV N +AR + ++ E RV +A ++W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 128 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SVWRPMVTAITQAK 186
FEM E+ID + RF I++++RS+GK +S +D R +L CL VW VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 187 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVH- 245
L + ++ L L+ HE+ + K +K L S T S V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 246 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 299
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 300 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 346
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 347 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 406
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 407 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKS 466
+ DS D E+++++ + + E+ + K ++E LK G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 467 TETFQNIVGSQNE-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 519
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRK---D 576
+ ++ K +K+ ++ + R E+ + +D RQ V K D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLKTKND 551
Query: 577 LLEELTLKDP 586
LLE K+P
Sbjct: 552 LLESFATKEP 561
>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2145
Score = 996 bits (2575), Expect = 0.0
Identities = 553/1306 (42%), Positives = 772/1306 (58%), Gaps = 99/1306 (7%)
Query: 361 LYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYD--ESRKTIKILQDSH 418
L +L+ + ++D C L + E++++ +L+ K D ES T + + S
Sbjct: 507 LEMELKELKEKFVHDRIGRCENCPILTSDNDELRQQVAMLRTKNDLLESFATKEPIHSSC 566
Query: 419 FDMSEKQREINRKQKGIMSVPS-EVQKENILLKKEVETLKKVLTGFIKSTETFQN----- 472
+ + + E+ + I S+ S + I LK ++E+ KK + +S E F
Sbjct: 567 ANCAILETELKDAKTVIDSIKSIDSCSSCISLKVDLESAKKENSYLQQSLERFAQGKKKL 626
Query: 473 --IVGSQNESTKKSGLGFK-------DPSKIIGSFVPKAKIRVKCCFCDKYGHNESICHV 523
I+ S G+G+ +I+G ++ K G +
Sbjct: 627 NMILDQSKVSINNQGIGYDFAESLRIGTHEILGVTDGMIELAQKPITFKSAGFIGNTSSS 686
Query: 524 KKKFIKQNNLYLSSERS--------------HLNRSESSQKAEKAKKTCFYCNKSDHKRQ 569
K + + ++S+ H ++ EK K C YC K+ H
Sbjct: 687 TPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHLDF 746
Query: 570 NVTFRKDLLEELTLKDPTLHGYLKFLSCQM*VLPQGARTKPWYLDSGCSRHMTGDRNCFL 629
V R+ W +DSGCSRHMTG+ F
Sbjct: 747 GV----------------------------------GRSNSWLVDSGCSRHMTGEAKWFT 772
Query: 630 TFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLSISQLCDSGFE 688
+ + +TFG+ G++ KGTI + +++V V LK+NLLS+SQLCD E
Sbjct: 773 SLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDENLE 832
Query: 689 VIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDM---PAEFCFMSLEKDKWIWHKRAG 745
V FK + V AS + +F SR ++ + P+ S +D + WH+R G
Sbjct: 833 VRFKKDRSRVLDASESPVF-DISRVGRVFFANFDSSAPGPSRCLIASENRDLFFWHRRLG 891
Query: 746 HISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHI 805
HI ++++S +DL+RGLPK+ KD +C C GK SS K + + T P +LLH+
Sbjct: 892 HIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQLLHM 951
Query: 806 DLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIIT 865
D P + S+ GK Y V+VDDFSR++WV FL+ K+E+F FQ+ + + E +
Sbjct: 952 DTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGALRA 1011
Query: 866 VRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVE 925
+RSD+G EF+N++F++F D +G++H FS PQQNGVVERKNRTL EMARTML+E
Sbjct: 1012 IRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEFTTP 1071
Query: 926 NYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGK 985
FW EAI+ +C+I NRV +R +L+KTPYEL +P +S+ +FGC C++L + L K
Sbjct: 1072 RKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSGN-LDK 1130
Query: 986 FDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHSKPK------------ 1033
F+ +S IFLGY+T S+ YRVY L T + + + FDE ++P+
Sbjct: 1131 FESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGARPEISGVPDESIFVD 1190
Query: 1034 -----ENEDTEAPTLQNVP-VQNT--ENTVEKEDDQNVQDQSLQ-------SPPRSWRMV 1078
+++D+ P L + P VQ T +T D S S P + R +
Sbjct: 1191 EDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSSSAAEEIDGGTSGPTAPRHI 1250
Query: 1079 GD-HPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFE 1137
+ HP D +IG + V S++ N A ++ EPK++ A+ D++W+ M EEL FE
Sbjct: 1251 QNRHPPDSMIGGLGERVTRNRSYELVNSAFVASFEPKNVCHALSDENWVNAMHEELENFE 1310
Query: 1138 RNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPV 1197
RNKVW+LV +IGT+WVF+NKL E+G +VRNKARLVAQG+ Q EG+D++ETFAPV
Sbjct: 1311 RNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPV 1370
Query: 1198 ARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTK 1257
ARLEAIRILLA+AA K KLFQMDVKSAFLNG + EEVYV QPPGF N + PNHVFKL K
Sbjct: 1371 ARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEK 1430
Query: 1258 ALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKI 1317
ALYGLKQAPRAWY+RL TFL++NGF G +D TLF D L+VQ+YVDDIIFG +
Sbjct: 1431 ALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSH 1490
Query: 1318 KMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIM 1377
+ +FS++M EFEMSMMGEL FFLGLQIKQ GIF+ Q KY K++LKK+ M + K +
Sbjct: 1491 ALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPI 1550
Query: 1378 STPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHL 1437
+TPM +SSL DE G+ + ++EYR MIGSLLYLTASRPDI F+V LCARFQ + SH
Sbjct: 1551 ATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHR 1610
Query: 1438 TAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGW 1497
AVKR+FRY+ T + G+WY S+ + A+ DAD+AG K++RKSTSG+C FLG +L+ W
Sbjct: 1611 QAVKRMFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVSW 1670
Query: 1498 SCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNP 1557
S RKQ+++ ST EAEYV+AAS CSQ+LW+ + L+DY L ++ VP+ CDNTSAIN++KNP
Sbjct: 1671 SSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDYGLSFSGVPLLCDNTSAINIAKNP 1730
Query: 1558 IQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPLVR 1603
+QHSR+KHIEI++HF+RD+V+K I L FV++E QLADIFTKPL R
Sbjct: 1731 VQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLADIFTKPLDR 1776
Score = 135 bits (340), Expect = 1e-29
Identities = 145/610 (23%), Positives = 254/610 (40%), Gaps = 85/610 (13%)
Query: 8 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKA 67
S +P +FDG N+ WK +ME +L+SQ +++W + VP + + A
Sbjct: 6 SAKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMA 57
Query: 68 QVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFE 127
QV N +AR + ++ E RV +A ++W L HEG + ++ R + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQ 117
Query: 128 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SVWRPMVTAITQAK 186
FEM E+ID + RF I++++RS+GK +S +D R +L CL VW VT+IT++
Sbjct: 118 RFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 177
Query: 187 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVH- 245
L + ++ L L+ HE+ + K +K L S T S V L +H
Sbjct: 178 PLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAALHS 237
Query: 246 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 299
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 238 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 286
Query: 300 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 346
H + CP +KK K K KKA+ E D D+D
Sbjct: 287 HKRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 340
Query: 347 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 406
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 341 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 388
Query: 407 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKS 466
+ DS D E+++++ + + E+ + K ++E LK G
Sbjct: 389 PSLDGSLCDDSCSDNDSVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 446
Query: 467 TETFQNIVGSQNE-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 519
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 447 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCALGAGNP-SSASAACSTCYEMKVDMG 505
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 576
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 506 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 551
Query: 577 LLEELTLKDP 586
LLE K+P
Sbjct: 552 LLESFATKEP 561
>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1410
Score = 993 bits (2567), Expect = 0.0
Identities = 508/1029 (49%), Positives = 684/1029 (66%), Gaps = 34/1029 (3%)
Query: 607 RTKPWYLDSGCSRHMTGDRNCFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSAKIEN 665
R+ W +DSGCSRHMTG+ F + + G +TFG+ G++ KGTI + +++
Sbjct: 365 RSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKD 424
Query: 666 VQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDM- 724
V V LK+NLLS+SQLCD EV FK + V AS + +F SR ++ +
Sbjct: 425 VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVF-DISRVGRVFFANFDSSA 483
Query: 725 --PAEFCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGK 782
P+ S +D + WH+R GHI ++++S +DL+RGLPK+ KD +C C GK
Sbjct: 484 PGPSRCLVASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGK 543
Query: 783 QVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKD 842
SS K + + T P +LLH++ P + S+ GK Y V+VDDFSR++WV FL+ K+
Sbjct: 544 MTSSSHKPVTMVMTDGPGQLLHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 603
Query: 843 ESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNG 902
E+F FQ+ + + E + +RSD+G EF+N++F++F D +G++H FS PQQNG
Sbjct: 604 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 663
Query: 903 VVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKP 962
VVERKNRTL EMARTML+E FW EAI+ +C+I NRV +R +L+KTPYEL +P
Sbjct: 664 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 723
Query: 963 SISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHII 1022
+S+ +FGC C++L + L KF+ +S IFLGY+T S+ YRVY L T + + +
Sbjct: 724 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 782
Query: 1023 FDEYDEHSKPK-----------------ENEDTEAPTLQNVP-VQNT--ENTVEKEDDQN 1062
FDE ++P+ +++D+ P L + P VQ T +T D
Sbjct: 783 FDEASPGARPEISGVLDESIFVDEDSDDDDDDSIPPPLDSTPPVQETGSPSTTSPSGDAP 842
Query: 1063 VQDQSLQ-------SPPRSWRMVGD-HPTDQIIGSTTDGVRTRLSFQDNNMAMISQMEPK 1114
S S P + R + + HP D +IG + V S+ N A ++ EPK
Sbjct: 843 TTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYDLVNSAFVASFEPK 902
Query: 1115 SINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNK 1174
++ A+ D++W+ M EEL FERNKVW+LV +IGT+WVF+NKL E+G +VRNK
Sbjct: 903 NVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNK 962
Query: 1175 ARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEE 1234
ARLVAQG+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFLNG + EE
Sbjct: 963 ARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEE 1022
Query: 1235 VYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRK 1294
VYV QPPGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +D TLF
Sbjct: 1023 VYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTL 1082
Query: 1295 THNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGI 1354
D L+VQ+YVDDIIFG + + +FS++M EFEMSMMGEL FFLGLQIKQ GI
Sbjct: 1083 HSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGI 1142
Query: 1355 FISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTAS 1414
F+ Q KY K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGSLLYLTAS
Sbjct: 1143 FVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTAS 1202
Query: 1415 RPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYA 1474
RPDI F+V LCARFQ + SH AVKRIFRY+ T + G+WY S+ + A+ DAD+A
Sbjct: 1203 RPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFA 1262
Query: 1475 GDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDY 1534
G K++RKSTSG+C FLG +L+ WS RKQ+++ ST EAEYV+AAS CSQ+LW+ + L+DY
Sbjct: 1263 GCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWMISTLKDY 1322
Query: 1535 SLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLA 1594
L ++ VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV++E QLA
Sbjct: 1323 GLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFVESEKQLA 1382
Query: 1595 DIFTKPLVR 1603
DIFTKPL R
Sbjct: 1383 DIFTKPLDR 1391
Score = 120 bits (302), Expect = 3e-25
Identities = 106/391 (27%), Positives = 171/391 (43%), Gaps = 54/391 (13%)
Query: 26 MELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKAQVLLNSKARLFLSCALTM 85
ME +L+SQ +++W + VP + + AQV N +AR + ++
Sbjct: 1 MEAYLQSQGHNVWNKVKSPYTVPDDAD--------ITPANMAQVDFNYRARNAIIGGISS 52
Query: 86 EESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVFEMSENETIDEMYARFT 145
E RV +A ++W L HEG + ++ R + ++++ FEM E+ID + RF
Sbjct: 53 GEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHKEYQRFEMHPGESIDSYFKRFG 112
Query: 146 TIVNEMRSLGKAYSTHDRIRKILRCLP-SVWRPMVTAITQAKDLKSMNLEDLIGSLRAHE 204
IV+++RS+GK +S +D R +L CL VW VT+IT++ L + ++ L L+ HE
Sbjct: 113 EIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPLSDLTMDKLYSKLKTHE 172
Query: 205 VVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVH-------EEEAEDELALIS 257
+ + K +K L S T S V L +H E+ ED+LAL +
Sbjct: 173 MDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVTEEQLEKIPEDDLALFA 232
Query: 258 KRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTGHFKNECPDIKKVQRKPPF 317
++ R +N KK KTN C+ C + H + CP +KK K
Sbjct: 233 RKFSRAY--KNVRNKKRGKTN---------EPFVCFECGEPNHIRVNCPKLKKKSDKTTK 281
Query: 318 K-------------KKAM---------ITWDDME-ESDSQEDADTDMGLMAQSDDEEEVI 354
K KKA+ + D++ + D QE D D M + E+ I
Sbjct: 282 KPEGQGRKGKNDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMCCLANNEDFI 341
Query: 355 IYKTDSLYKDLENKIDSLLYDSNFLTNRCHS 385
+ LE+K DS + +F R +S
Sbjct: 342 ----NLCLMALEDKDDSSEHPEDFGVGRSNS 368
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 991 bits (2562), Expect = 0.0
Identities = 509/1027 (49%), Positives = 658/1027 (63%), Gaps = 55/1027 (5%)
Query: 611 WYLDSGCSRHMTGDRNCFLTFE--KKDGGLVTFGNNDKGKIRGKGTIGNLNSAKIENVQY 668
W LDSGC++HMTGDR F TFE + + VTFG+N KGK+ G G I N I+NV
Sbjct: 549 WVLDSGCTQHMTGDRAMFTTFEVGRNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 608
Query: 669 VEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPAEF 728
V+ L NLLS++Q+CD F P V F G R NLY+++ N A
Sbjct: 609 VKSLNFNLLSVAQICDLSLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANL 668
Query: 729 --CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKS 786
C ++ W+WH+R H+ M ++K S+ DLV GL + FEKDK+C AC GKQV
Sbjct: 669 KTCLVAKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGKQVAC 728
Query: 787 SFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFE 846
S T +ST KPLELLH+DLF P S+ G + VIVDD+SR+TWV FL K +
Sbjct: 729 SHPTKSIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVAD 788
Query: 847 AFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVER 906
F+ F KR QNE ++ +RS+ G EF+N + + + D+ GIKH +PQQNGVVER
Sbjct: 789 LFKKFAKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNGVVER 848
Query: 907 KNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISY 966
KNRTL EMARTML+E V + FWAEAINT+C+ NR+ + +VL KT YE+ KP+I+Y
Sbjct: 849 KNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKPNIAY 908
Query: 967 FHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEY 1026
F +FGC CYI +L KF+ + D+ LGY++ SK YRVYN VE + + FDE
Sbjct: 909 FRVFGCKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQFDET 968
Query: 1027 DEHS--------------------------KPKENEDTEAPTLQNVPVQNTENTVEKEDD 1060
+ KP E ED + + Q+ P + + + +
Sbjct: 969 NGSQEGHENLDDVGDEGLMRVMKNMSIGDVKPIEVEDKPSTSTQDEP---STSAMPSQAQ 1025
Query: 1061 QNVQDQSLQSPPRSWR----MVGDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPK 1114
V+++ Q PP R + DHP DQ++G + GV+TR + + +S +E K
Sbjct: 1026 VEVEEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVTSICEHYSFVSCLERK 1085
Query: 1115 SINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNK 1174
++EA+ D W+ M EEL F RNKVW LV +D +IGT+WVFRNK DE G VVRNK
Sbjct: 1086 HVDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRNK 1145
Query: 1175 ARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEE 1234
ARLVAQG+ Q EG+D+ ETFAPVARLEAI ILLA+A+ IKLFQMDVKSAFLN
Sbjct: 1146 ARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVKSAFLN------ 1199
Query: 1235 VYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRK 1294
+ + PNHV+KL+KALYGL+QAPRAWY+RL FL+ F GK+D TLF K
Sbjct: 1200 ----------DTKYPNHVYKLSKALYGLRQAPRAWYERLRDFLLSKDFKIGKVDITLFTK 1249
Query: 1295 THNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGI 1354
D + Q+YVDDIIFG+T C+EF ++M EFEMSM+GEL FFLGLQIKQ NG
Sbjct: 1250 IIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNGT 1309
Query: 1355 FISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTAS 1414
F+SQ KYIKD+LK++ + +AK + TPM + LD DE GK + K YR MIGSLLYLT S
Sbjct: 1310 FVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTVS 1369
Query: 1415 RPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYA 1474
RPDI+F+V +CARFQ KE HL AVKRI RYL ++ +GLWY KG+ F LV Y D DYA
Sbjct: 1370 RPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDYA 1429
Query: 1475 GDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDY 1534
G KV+RKSTS SCQ LG++L+ WS +KQN++ LST E EYVSA SCC+Q+LW++ L DY
Sbjct: 1430 GCKVDRKSTSSSCQMLGRSLVSWSSKKQNSVALSTAETEYVSAGSCCAQLLWMKQTLLDY 1489
Query: 1535 SLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLA 1594
+ +T P+ CDN AI ++ NP+QHSR+KHI+I+HHF+RDHV K +I +S + TE+QLA
Sbjct: 1490 GISFTKTPLLCDNDGAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLA 1549
Query: 1595 DIFTKPL 1601
DIFTKPL
Sbjct: 1550 DIFTKPL 1556
Score = 108 bits (269), Expect = 2e-21
Identities = 111/525 (21%), Positives = 215/525 (40%), Gaps = 52/525 (9%)
Query: 10 RPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKAQV 69
+ P+F+G+NY WK KM L++ +W+++ G + T + ++ +
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLMEIDHRN---------L 60
Query: 70 LLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVF 129
LN++A L +L+ EE +RV A E+W+ L HEGTS K+ ++ ++E F
Sbjct: 61 QLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLHFLKIQYETF 120
Query: 130 EMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDLK 189
M +E++++MY R IVN+++ LG Y+ + +K+LR LP + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVTMLINS-DMS 179
Query: 190 SMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVHEEEA 249
M L+G + +++ + K + + ++ ++ + E +
Sbjct: 180 RMTPASLLGKINTNDMRKERGKGSNSNRRRNRRPNKTLSNLRCFECGEKGHFASKCPSKD 239
Query: 250 EDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTGHFKNECPDIK 309
+D K+ L + +++K+ K I+ + + + + + P +
Sbjct: 240 DDGDKSSKKKSGGYKLMK-KLKKEGKKIEAFIEEWDSNEESSPHPGPRKKMVMMQAPGRR 298
Query: 310 K----VQRKPPFKKKAMITWDDMEESDSQEDAD-------TDMGLMAQSDDEEEVIIYKT 358
+ R+ ++W S+S +D D M + E+E++ +K
Sbjct: 299 RWPLLPSRRLHHSSLHFVSWQKAPLSESDDDCDDVSYDELVSMFEELHAYSEKEIVKFKA 358
Query: 359 --------DSLYKDLENKIDSLLYD--------SNFLTNRCHSLIKELS---EIKEEKEI 399
+ LY++L+ + L N L+ H + ++ ++ ++
Sbjct: 359 LKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNLLSTTQHGALIDVGISCDLLDDSAT 418
Query: 400 LQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKV 459
Y S +I D DMS + + + + EN LK++V L K
Sbjct: 419 FHIAYVAS-SSISTSCDDLVDMSS-----SSSSSCVSICDASLVVENNELKEQVAKLNKR 472
Query: 460 LTGFIKSTETFQNIVGSQNESTKKSGLGF-----KDPSKIIGSFV 499
L K T I+ Q K GLGF K PS FV
Sbjct: 473 LERCFKGKNTLDKILSEQRCILNKEGLGFIPKKGKKPSHRATRFV 517
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 982 bits (2539), Expect = 0.0
Identities = 506/1024 (49%), Positives = 656/1024 (63%), Gaps = 47/1024 (4%)
Query: 611 WYLDSGCSRHMTGDRNCFLTFEK--KDGGLVTFGNNDKGKIRGKGTIGNLNSAKIENVQY 668
W LDSGC++HMTGDR F TFE + VTFG+N KGK+ G G I N I+NV
Sbjct: 558 WVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSL 617
Query: 669 VEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPAEF 728
V+ L NLLS++Q+CD F P V F G R NLY+ + N A
Sbjct: 618 VKSLNFNLLSVAQICDLVLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLGDFNSSEANL 677
Query: 729 --CFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKS 786
C ++ W+WH+R H+ M ++KLS+ DLV GL + FEKDK+C AC GKQV
Sbjct: 678 KTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVAC 737
Query: 787 SFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFE 846
S T +ST +PLELLH++ F P S+ G + VIVDD+SR+TW+ FL K E
Sbjct: 738 SHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKSIVAE 797
Query: 847 AFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVER 906
F+ F KR QNE ++ +RSD+G +F+N + + + D+ GIKH S +PQQNGVVE
Sbjct: 798 LFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNGVVEM 857
Query: 907 KNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISY 966
KNRTL EMARTML+E V + FWAEAINT+C+ NR+ + ++L KT YEL KP+++Y
Sbjct: 858 KNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVAY 917
Query: 967 FHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEY 1026
F +FGC CYI +L KF+ + D+ LGY++ SK YRVYN VE + + FDE
Sbjct: 918 FRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDET 977
Query: 1027 DEHS--------------------------KPKENEDTEAPTLQNVPVQNTENTVEKEDD 1060
+ KP E ED + + Q+ P + + + +
Sbjct: 978 NGSQEGHENLDDVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSATPSQAQVEV 1037
Query: 1061 QNVQDQSLQSPPRSWRMVG-DHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSIN 1117
+ + Q L PPR + DHP DQ++G + GV+TR + + +S +EPK ++
Sbjct: 1038 EEEKAQDLPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVASICEHYSFVSCLEPKHVD 1097
Query: 1118 EAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARL 1177
EA+ D WI M +EL+ F RNKVW LV +D +IGT+WVFRNK DE G VVRNKAR
Sbjct: 1098 EALCDPDWINAMHKELNNFARNKVWTLVERLRDHNVIGTKWVFRNKQDENGLVVRNKARF 1157
Query: 1178 VAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYV 1237
VAQG+ Q EG+D+ ETFAPV RLEAI ILLA+A+ +IKLFQMDVKSAFLNG + E V+V
Sbjct: 1158 VAQGFTQVEGLDFGETFAPVTRLEAICILLAFASCFNIKLFQMDVKSAFLNGEIAELVFV 1217
Query: 1238 SQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHN 1297
QPPGF + + PNHV+KL+KALYGLKQAPRAWY+RL FL+ F GK+DTTLF K
Sbjct: 1218 EQPPGFEDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIG 1277
Query: 1298 TDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFIS 1357
D + Q+YVDDIIFG T C+EF ++M EFEMSM+GEL FF GLQIKQ +G F
Sbjct: 1278 DDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQIKQLKDGTF-- 1335
Query: 1358 QEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPD 1417
+ +AK + TPM + LD DE GK + K YR MIGSLLYLTASRPD
Sbjct: 1336 ------------GLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPD 1383
Query: 1418 IVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDK 1477
I+F+V +CARFQ KE HL AVKRI RYL ++ +GLWY KG+ F LV Y D+DYAG K
Sbjct: 1384 IMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDSDYAGCK 1443
Query: 1478 VERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLR 1537
V+RKSTSGSCQ LG++L+ WS +KQN + L EAEYVSA SCC+Q+LW++ L DY +
Sbjct: 1444 VDRKSTSGSCQMLGRSLVSWSSKKQNFVALFIAEAEYVSAGSCCAQLLWMKQILLDYGIS 1503
Query: 1538 YTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIF 1597
+T P+ C+N SAI ++ NP+QHSR+KHI+I+HHF+RDHV K +I +S + TE+QLADIF
Sbjct: 1504 FTKTPLLCENDSAIKIANNPVQHSRTKHIDIRHHFLRDHVAKCDIVISHIRTEDQLADIF 1563
Query: 1598 TKPL 1601
TKPL
Sbjct: 1564 TKPL 1567
Score = 124 bits (310), Expect = 3e-26
Identities = 133/567 (23%), Positives = 237/567 (41%), Gaps = 89/567 (15%)
Query: 10 RPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKAQV 69
+ P+F+G+NY WK KM L++ +W+++ G + T + ++ + V
Sbjct: 10 KAPMFNGTNYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLTEIDHRNLKLNAQAMNV 69
Query: 70 LLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVF 129
L NS L+ EE +RV A E+W+ L HE TS K+ ++ ++E F
Sbjct: 70 LFNS---------LSQEEFDRVSNLETAYEIWNKLAEIHESTSEYKDAKLHFLKIQYETF 120
Query: 130 EMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLPSVWRPMVTAITQAKDLK 189
M +E++++MY R IVN+++ LG Y+ + +K+LR LP + +VT + + D+
Sbjct: 121 SMLPHESVNDMYGRLNVIVNDLKGLGANYTNLEVAQKMLRALPEKYETLVTMLINS-DMS 179
Query: 190 SMNLEDLIGSLRAHEVVLQGDKPVKKV----KTLALKASQQTPSVADEDVQEPQELEEVH 245
M L+G + +++ K +++ K +AL+A + S + ++ EV+
Sbjct: 180 RMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAEVEDKSKS--------KVNEVN 231
Query: 246 EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADK--SQVTCYGCNKTGHFKN 303
++ E+E+ L+++R ++ RR + R + +N +K S + C+ C+
Sbjct: 232 KD-LEEEIVLLARRFNDLLGRRKE-RGRGSNSNRRRNRRPNKTLSNLRCFECDSNEESSA 289
Query: 304 ECPDIKKVQRKPPFKKKAMITWDDMEE--------------------SDSQEDADTD--- 340
++ KKK M E SDS+ D D D
Sbjct: 290 SSGSEEEGGDDASSKKKKMAVVAIKEAPSLFAPLCLMAKSPSKVTSLSDSESDDDCDDVS 349
Query: 341 ------MGLMAQSDDEEEVIIYKT--------DSLYKDLENKIDSLLYD--------SNF 378
M + E+E+I +KT + LY++L+ + L N
Sbjct: 350 YDELVSMFEELHAYSEKEIIKFKTLKKDHASLEVLYEELKTSHERLTISHEKLKEAHDNL 409
Query: 379 LTNRCHSLIKELS---EIKEEKEILQNKYDESRKTIKILQDSHFDMSEKQREINRKQKGI 435
L+ H + ++ ++ ++ + S +I D DM N
Sbjct: 410 LSTTQHGALIDVGISCDLLDDSATCHIAHVAS-SSISTSCDDLMDMP------NSSSSSC 462
Query: 436 MSV-PSEVQKENILLKKEVETLKKVLTGFIKSTETFQNIVGSQNESTKKSGLGF-----K 489
+S+ + + EN LK++V L K L K T I+ Q K GLGF K
Sbjct: 463 VSICDASLVVENNELKEQVAKLNKSLERCFKGKNTLDKILSEQQCILNKEGLGFILKKGK 522
Query: 490 DPSKIIGSFVPKAKIRVKCCFCDKYGH 516
PS FV K+ + C C + GH
Sbjct: 523 KPSHRATRFV-KSNGKY-CSKCREVGH 547
>gb|AAL35396.1| Opie2a pol [Zea mays]
Length = 1048
Score = 960 bits (2482), Expect = 0.0
Identities = 490/1028 (47%), Positives = 668/1028 (64%), Gaps = 48/1028 (4%)
Query: 621 MTGDRNCFLTFEK-KDG-GLVTFGNNDKGKIRGKGTIGNLNSAKIENVQYVEGLKHNLLS 678
MTG++ F ++ K KD + FG+ ++GK++G G I + I NV VE L +N LS
Sbjct: 1 MTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISSEHSISNVFLVESLGYNFLS 60
Query: 679 ISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPA--EFCFMSLEKD 736
+SQLC+ G+ +F V + S L F G LY+++ A + C ++
Sbjct: 61 VSQLCNMGYNCLFTNVDVSVFRRSDGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSM 120
Query: 737 KWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFIST 796
W+WH+R H+ MK + KL + + V GL + F+KD+ C AC GKQV+ S T ++T
Sbjct: 121 GWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFKKDRPCVACQAGKQVRGSHHTKNVMTT 180
Query: 797 QKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQ 856
+PLE+LH+DLF PV S+ G +YG VIVDDFSRFTWV FL+ K E+ + + +R Q
Sbjct: 181 SRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRYLRRAQ 240
Query: 857 NEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMAR 916
NE + +RSD+G EF+N + F E GIKH FS TPQQNGVVERKNRTL +MAR
Sbjct: 241 NEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHEFSAPYTPQQNGVVERKNRTLMDMAR 300
Query: 917 TMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYI 976
TML E FW+EA+NT+C+ +NRV + ++L T YEL KP++SYF +FG CYI
Sbjct: 301 TMLGEFKTPERFWSEAVNTACHSINRVYLHRLLKNTSYELLTGNKPNVSYFRVFGSKCYI 360
Query: 977 LNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDE----------- 1025
L K + KF PK+ + LGY + +K YRV+N + VE+S ++FDE
Sbjct: 361 LVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFDETNGSLREQVVN 420
Query: 1026 ---YDEHS--------------KPKENEDTEAP---TLQNVPVQNTENTVE--------K 1057
DE +P+E+ + + P T+ + P Q+ E +
Sbjct: 421 LDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTTMVHPPTQDDEQAPQVGAHDQGGA 480
Query: 1058 EDDQNVQDQSLQSPPRSWRMV--GDHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEP 1113
+D Q ++++ Q+PP R +HP +QI+G + GV TR + + + +S +EP
Sbjct: 481 QDVQVEEEEAPQAPPTQVRATIQRNHPVNQILGDISKGVTTRSRLVNFCEHYSFVSSIEP 540
Query: 1114 KSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRN 1173
+ E ++D W+ M+EEL+ F+RN+VW LVP + + ++GT+WVFRNK DE G V RN
Sbjct: 541 FRVEEVLLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVGTKWVFRNKQDEHGVVTRN 599
Query: 1174 KARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNE 1233
KARLVA+GY Q G+D++ETFAPVARL++IRI LAYAAH S +L+QMDVKSAFLNG + E
Sbjct: 600 KARLVAKGYAQVAGLDFEETFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSAFLNGPIKE 659
Query: 1234 EVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFR 1293
EVYV QPPGF ++ P+HV KL+KALYGLKQAPRAWY+ L FLI N F GK D TLF
Sbjct: 660 EVYVEQPPGFEDERFPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVGKADPTLFT 719
Query: 1294 KTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNG 1353
KT + DL + Q+YVDDIIFG+T CEEFS +M +FEMSMMGEL +FLG Q++Q +G
Sbjct: 720 KTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGFQVRQLKDG 779
Query: 1354 IFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTA 1413
FISQ KY +D++K++ M +AK TPM D ++ GKS+ +K YR IGSLLYL A
Sbjct: 780 TFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTIGSLLYLCA 839
Query: 1414 SRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADY 1473
SRPDI+ +V +CARFQ+ +E HL AVKRI RYLV T G+WY KGS+FDL+ Y D+DY
Sbjct: 840 SRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDLIGYSDSDY 899
Query: 1474 AGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLED 1533
A KV+RKSTS CQFLG++L+ W+ +KQ ++ LST EAEYV+ CC+Q+LW+R L D
Sbjct: 900 ARCKVDRKSTSRMCQFLGRSLVSWNSKKQTSVALSTAEAEYVAVGQCCAQLLWMRQTLRD 959
Query: 1534 YSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQL 1593
+ + VP+ CDN SAI +++NP++HSR+KHI+I+HHF+RDH QK I + V +EN L
Sbjct: 960 FGYNLSEVPLLCDNESAIRIAENPVEHSRTKHIDIRHHFLRDHQQKGVIEVFHVSSENHL 1019
Query: 1594 ADIFTKPL 1601
ADIFTKPL
Sbjct: 1020 ADIFTKPL 1027
>gb|AAP53706.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37534234|ref|NP_921419.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1419
Score = 957 bits (2474), Expect = 0.0
Identities = 491/998 (49%), Positives = 662/998 (66%), Gaps = 35/998 (3%)
Query: 611 WYLDSGCSRHMTGDRNCFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNLNSAKIENVQYV 669
W +DSG SRHMTGD+N F + +K + F + + G + +++NV V
Sbjct: 429 WIVDSGDSRHMTGDKNWFSSLKKASKTESIVFADASTSAVVATGLVKVNEKFELKNVALV 488
Query: 670 EGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYVLELNDMPAEF- 728
+ LK+NLLS+SQ+ D FEV FK +V + + + + SR + ++ + + +
Sbjct: 489 KDLKYNLLSVSQIVDENFEVHFKKTGSKVFDSCGDSVL-NISRYERVFKADFENSVSLVI 547
Query: 729 -CFMS-LEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKS 786
C ++ +KD WH+R GH+ + +LS LDLVRGL K+ + D IC C K V +
Sbjct: 548 TCLVAKFDKDVMFWHRRLGHVGFDHLTRLSGLDLVRGLSKLKKDLDLICTPCRHAKMVST 607
Query: 787 SFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFE 846
S I + T P +LLH+D P + S+ GK Y VIVDDFSR++WV F+ KDE+F+
Sbjct: 608 SHAPIVSVMTDAPGQLLHMDTVGPARVQSVGGKWYVLVIVDDFSRYSWVFFMTTKDEAFQ 667
Query: 847 AFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVER 906
F+ R++ E ++ +RSD+GGEF+NASF+ F +E G++H FS R PQQN VVER
Sbjct: 668 HFRGLFLRLELEFPGSLKRIRSDNGGEFKNASFEQFCNERGLEHEFSSPRVPQQNSVVER 727
Query: 907 KNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISY 966
KNR L EMARTML+E FWAEAINT+CYI NRV +R L KT YEL +P +S+
Sbjct: 728 KNRVLVEMARTMLDEYKTTRKFWAEAINTACYISNRVFLRSKLGKTSYELRFGHQPKVSH 787
Query: 967 FHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEY 1026
+FGC C++L + L KF+ +S +FLGY ++GYRV L T + + + FDE
Sbjct: 788 LRVFGCKCFVLKSGN-LDKFEARSTDGLFLGYPAHTRGYRVLILGTNKIVETCEVSFDEA 846
Query: 1027 DEHSKPKENEDTEAPTLQNVPVQNTENTVEKEDDQNVQDQSLQSPPRSWRMVGDHPTDQI 1086
++P + T + V+ ED + +D+S D+ D
Sbjct: 847 SPGTRPD--------------IAGTLSQVQGEDGRIFEDES------------DYDDDDE 880
Query: 1087 IGSTTDGV-RTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWN 1143
+GS + R++++ D N A ++ EPK ++ A+ D+SWI M EEL FERNKVW
Sbjct: 881 VGSAGERTTRSKVTTHDVCANSAFVASFEPKDVSHALTDESWINAMHEELENFERNKVWT 940
Query: 1144 LVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAI 1203
LV +IGT+WVF+NK +E+G +VRNKARLVAQG+ Q EG+D+DETFAPVAR+EAI
Sbjct: 941 LVEPPSGHNVIGTKWVFKNKQNEDGLIVRNKARLVAQGFTQVEGLDFDETFAPVARIEAI 1000
Query: 1204 RILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLK 1263
R+LLA+AA K KL+QMDVKSAFLNGF+ EEVYV QPPGF N + PNHVFKL+KALYGLK
Sbjct: 1001 RLLLAFAASKGFKLYQMDVKSAFLNGFIQEEVYVKQPPGFENPDFPNHVFKLSKALYGLK 1060
Query: 1264 QAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEF 1323
QAPRAWYDRL FL+ GF+ GK+D TLF H + L VQ+YVDDIIFG + + +F
Sbjct: 1061 QAPRAWYDRLKNFLLAKGFTMGKVDKTLFVLKHGDNQLFVQIYVDDIIFGCSTHAVVVDF 1120
Query: 1324 SNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHP 1383
+ M+ EFEMSMMGEL +FLGLQIKQ G F+ Q KY KD+L+++KM K +STP+
Sbjct: 1121 AETMRREFEMSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGS 1180
Query: 1384 SSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRI 1443
++ LD DE G+++ +KEYR MIGSLLYLTASRPDI FAV LCARFQ + SH AVKRI
Sbjct: 1181 TAVLDPDEDGEAVDQKEYRSMIGSLLYLTASRPDIQFAVCLCARFQASPRASHRQAVKRI 1240
Query: 1444 FRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQN 1503
RYL T + G+WY SS L Y DAD+ G +++RKSTSG+C FLG +LI WS RKQ+
Sbjct: 1241 MRYLNHTLEFGIWYSTSSSICLSGYSDADFGGCRIDRKSTSGTCHFLGTSLIAWSSRKQS 1300
Query: 1504 TIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRS 1563
++ ST E+EYV+AASCCSQILW+ + L+DY + + VP++CDNTSAIN++KNP+QHSR+
Sbjct: 1301 SVAQSTAESEYVAAASCCSQILWLLSTLKDYGITFEKVPLFCDNTSAINIAKNPVQHSRT 1360
Query: 1564 KHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
KHI+I+ HF+RDHV+K ++ L F+DT+ Q+ADIFTKPL
Sbjct: 1361 KHIDIRFHFLRDHVEKGDVELQFLDTKLQIADIFTKPL 1398
Score = 126 bits (316), Expect = 7e-27
Identities = 83/321 (25%), Positives = 155/321 (47%), Gaps = 42/321 (13%)
Query: 8 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDE-K 66
S +P +FDG+++ W KM+ ++ +++ D+W ++ +P A +TD K
Sbjct: 8 STKPHIFDGTDFPHWCSKMQSYIMAENYDIWRKVSHPYVIP----------EAINTDALK 57
Query: 67 AQVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKF 126
+ N KAR LS ++ + +RV A E+W+ LK H+GT ++KE R D+ +++
Sbjct: 58 TEFENNCKARNILSSGISRSDYDRVAHLETAHEIWNALKNFHQGTKNIKELRRDLFKKEY 117
Query: 127 EVFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCL-----PSVWRPMVTA 181
FEM E +D+ +RF I++++RS+ +Y + +I R S+W VT+
Sbjct: 118 IKFEMKSGEALDDYLSRFNKILSDLRSVDSSYDANYPQSEISRHFLNGLDMSIWEMKVTS 177
Query: 182 ITQAKDLKSMNLEDLIGSLRAHEVVLQGDKP-------VKKVKTLALKASQQTPS-VADE 233
I ++ ++ ++ L+ L L+ E+ + K V +L + AS PS +A
Sbjct: 178 IQESVNMSTLTLDSLYTKLKTREMNILSRKVDSKSSALVSSSSSLIVDASSSMPSFLAAF 237
Query: 234 DVQEPQELEEVHEEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCY 293
+ +LE++ EE +LAL++ RI R M ++ P C+
Sbjct: 238 NATSDDQLEQIEEE----DLALVANRIARAMNNARNRKRGGPN--------------RCF 279
Query: 294 GCNKTGHFKNECPDIKKVQRK 314
C H ++ CP + + +R+
Sbjct: 280 ECGSIDHLRSHCPKLGRGKRE 300
>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1799
Score = 926 bits (2393), Expect = 0.0
Identities = 495/1096 (45%), Positives = 668/1096 (60%), Gaps = 63/1096 (5%)
Query: 541 HLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTFRKDLLEELTLKDPTLHGYLKFLSCQM* 600
H ++ EK K C YC K+ H LE L + + G + L
Sbjct: 715 HKQNQRQTKPVEKTKYECTYCGKAGHL-------VSALERLEKSNKNVLGLEELLESLRG 767
Query: 601 VLPQGA-RTKPWYLDSGCSRHMTGDRNCFLTFEKKDGG-LVTFGNNDKGKIRGKGTIGNL 658
G R+ W +DSGCSRHMTG+ F + + G +TFG+ G++ KGTI
Sbjct: 768 SSDFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVN 827
Query: 659 NSAKIENVQYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQASSNKLFFSGSRRKNLYV 718
+ +++V V LK+NLLS+SQLCD EV FK + V AS + +F SR ++
Sbjct: 828 DKFMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPVF-DISRVGRVFF 886
Query: 719 LELNDM---PAEFCFMSLEKDKWIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKIC 775
+ P+ S +D + WH+R GHI ++++S +DL+RGLPK+ KD +C
Sbjct: 887 ANFDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVC 946
Query: 776 EACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWV 835
C GK SS K + + T P +LLH+D P + S+ GK + W+
Sbjct: 947 APCRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWRKHLASFSLLLVVWL 1006
Query: 836 LFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCA 895
E F ++ + ++I + S+ H FS
Sbjct: 1007 WSFLVLFEPFAVIMALNSKILH-LNLSVILLESN--------------------HQFSSP 1045
Query: 896 RTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYE 955
PQQNGVVERKNRTL EMARTML+E FW EAI+ +C+I NRV +R +L+KTPYE
Sbjct: 1046 YVPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYE 1105
Query: 956 LWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTV 1015
L +P +S+ +FGC C++L + L KF+ +S IFLGY+T S+ YRVY L T +
Sbjct: 1106 LRFGRRPKVSHLRVFGCKCFVLKS-GNLDKFESRSLDGIFLGYATHSRAYRVYVLSTNKI 1164
Query: 1016 EISMHIIFDEYDEHSKPK-----------------ENEDTEAPTLQNV-PVQNTENTVEK 1057
+ + FDE ++P+ +++D+ +P L + PVQ T + +
Sbjct: 1165 VETCEVTFDEASPGARPEISGVPDESIFVDEDSDDDDDDSISPPLDSTPPVQETGSPLTT 1224
Query: 1058 EDDQNVQ----------DQSLQSPPRSWRMVGDHPTDQIIGSTTDGVRTRLSFQDNNMAM 1107
+ D P + HP D +IG + V S++ N A
Sbjct: 1225 SPSGDAPTTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNSAF 1284
Query: 1108 ISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEE 1167
++ EPK++ A+ D++W+ M EEL FERNKVW+LV ++IGT+WVF+NKL E+
Sbjct: 1285 VASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFSVIGTKWVFKNKLGED 1344
Query: 1168 GKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFL 1227
G +VRNKARLVAQG+ Q EG+D++ETFAPVARLEAIRILLA+AA K KLFQMDVKSAFL
Sbjct: 1345 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1404
Query: 1228 NGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKI 1287
NG + EEVYV QPPGF N + PNHVFKL KALYGLKQAPRAWY+RL TFL++NGF G +
Sbjct: 1405 NGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1464
Query: 1288 DTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQI 1347
D TLF D L+VQ+YVDDIIFG + + +F ++M EFEMSMMGEL FFLGLQI
Sbjct: 1465 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELTFFLGLQI 1524
Query: 1348 KQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGS 1407
KQ GIF+ Q KY K++LKK+ M + K ++TPM +SSL DE G+ + ++EYR MIGS
Sbjct: 1525 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1584
Query: 1408 LLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVA 1467
LLYLTASRPDI F+V LCARFQ + SH AVKRIFRY+ T + G+WY S+ + A
Sbjct: 1585 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRA 1644
Query: 1468 YCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWV 1527
+ DAD+AG K++RKSTSG+C FLG +L+ WS RKQ+++ ST EAEYV+AAS CSQ+LW+
Sbjct: 1645 FSDADFAGCKIDRKSTSGTCHFLGTSLVSWSSRKQSSVAQSTAEAEYVAAASACSQVLWM 1704
Query: 1528 RNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFV 1587
+ L+DY L ++ VP+ CDNTSAIN++KNP+QHSR+KHIEI++HF+RD+V+K I L FV
Sbjct: 1705 ISTLKDYGLSFSGVPLLCDNTSAINIAKNPVQHSRTKHIEIRYHFLRDNVEKGTIVLEFV 1764
Query: 1588 DTENQLADIFTKPLVR 1603
++E QLADIFTKPL R
Sbjct: 1765 ESEKQLADIFTKPLDR 1780
Score = 131 bits (329), Expect = 2e-28
Identities = 145/610 (23%), Positives = 252/610 (40%), Gaps = 88/610 (14%)
Query: 8 SNRPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKA 67
S +P +FDG N+ WK +ME +L SQ +++W + VP + + A
Sbjct: 6 SMKPFVFDGHNFVIWKARMEAYLPSQGHNVWNKVKSPYTVPDDVD--------ITPANMA 57
Query: 68 QVLLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFE 127
QV N +AR + ++ E RV +A ++W L HEG + ++ + ++++
Sbjct: 58 QVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLNQFH---KEYQ 114
Query: 128 VFEMSENETIDEMYARFTTIVNEMRSLGKAYSTHDRIRKILRCLP-SVWRPMVTAITQAK 186
FEM E+ID + RF IV+++RS+GK +S +D R +L CL VW VT+IT++
Sbjct: 115 RFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESA 174
Query: 187 DLKSMNLEDLIGSLRAHEVVLQGDKPVKKVKTLALKASQQTPSVADEDVQEPQELEEVH- 245
L + ++ L L+ HE+ + K +K L S T S V L +H
Sbjct: 175 PLSELTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHS 234
Query: 246 ------EEEAEDELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 299
E+ ED+LAL +++ R +N +K KTN C+ C +
Sbjct: 235 VTEEQLEKIPEDDLALFARKFSRAY--KNVRDRKRGKTN---------EPFVCFECGEPN 283
Query: 300 HFKNECPDIKKVQRKPPFK-------------KKAMITWDDMEESDSQEDADTDMGLMAQ 346
H + CP +KK K K KKA+ E D D+D
Sbjct: 284 HIRVNCPKLKKKSDKTTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSD------ 337
Query: 347 SDDEEEVIIYKTDSLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDE 406
DD++E K D + + L ++ N C +++ + E E+ + D
Sbjct: 338 -DDDQE----KGDKDFSGM-----CCLANNEDFINLCLMALEDKDDSSEHPEVCLD--DI 385
Query: 407 SRKTIKILQDSHFDMSEKQREINRKQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKS 466
+ DS D E+++++ + + E+ + K ++E LK G
Sbjct: 386 PSLDGSLCDDSCSDNDTVDDELSKERMAHLMI--EISDKYRSSKYKIEKLKSENDGMALE 443
Query: 467 TETFQNIVGSQNE-STKKSGLG----FKDPSK--IIGSFVPKAKIRVKCCFCDKYGHNES 519
++++ ++ ST S L KD K +G+ P + C C + +
Sbjct: 444 IARLRSMIPEEDTCSTCASYLSEINLLKDKLKSCTLGAGNP-SSASAACSTCYEMKVDMG 502
Query: 520 ICHVKKKFIKQNNLYLSSERSHLNRSESSQKAEKAKKTCFYCNKSDHKRQNVTF---RKD 576
+ ++ K +K+ ++ + R E+ + +D RQ V + D
Sbjct: 503 LLEMELKELKEKFVH-----DRIGRCENCP---------ILTSDNDELRQQVAMLRTKND 548
Query: 577 LLEELTLKDP 586
LLE K+P
Sbjct: 549 LLESFATKEP 558
>ref|XP_468929.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|28209450|gb|AAO37468.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1128
Score = 911 bits (2354), Expect = 0.0
Identities = 458/895 (51%), Positives = 600/895 (66%), Gaps = 31/895 (3%)
Query: 738 WIWHKRAGHISMKTIAKLSQLDLVRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQ 797
W+WH+R H+ M ++KLS+ DLV GL + FEKDK+C AC KQV S T +ST
Sbjct: 213 WLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQASKQVACSHPTKSIMSTS 272
Query: 798 KPLELLHIDLFAPVQTASLTGKRYGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQN 857
+PLELLH+DLF P S+ G + VIVDD+S +TWV FL K E F+ F KR QN
Sbjct: 273 RPLELLHMDLFGPTTYKSIGGNSHCLVIVDDYSCYTWVFFLHDKCIVAELFKKFAKRAQN 332
Query: 858 EKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMART 917
E ++ +RSD+G +F+N + + + D+ IKH S +PQQNGVVERKNRTL EMART
Sbjct: 333 EFSCTLVKIRSDNGSKFKNTNIEDYCDDLSIKHELSATYSPQQNGVVERKNRTLIEMART 392
Query: 918 MLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYIL 977
ML+E V + FWAEAINT+C+ NR+ + ++L KT YEL KP+++YF +FGC CYI
Sbjct: 393 MLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVAYFRVFGCKCYIY 452
Query: 978 NNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEISMHIIFDEYDEHS------- 1030
+L KF+ + D+ LGY++ SK YRVYN VE + + FDE +
Sbjct: 453 RKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDETNGSQEGHENLD 512
Query: 1031 -------------------KPKENEDTEAPTLQNVPVQNTENTVEKEDDQNVQDQSLQSP 1071
KP E ED + + Q+ P + + + + + + Q P
Sbjct: 513 DVGDEGLMRAMKNMSIGDVKPIEVEDKPSTSTQDEPSTSASPSQAQVEVEKEKAQDPPMP 572
Query: 1072 PRSWRMVG-DHPTDQIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIEV 1128
PR + + DHP DQ++G + GV+TR + + +S +EPK ++EA+ D W+
Sbjct: 573 PRIYTALSKDHPIDQVLGDISKGVQTRSPVASICEHYSFVSCLEPKHVDEALYDPDWMNA 632
Query: 1129 MKEELSQFERNKVWNLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGI 1188
+ EEL+ F RNKVW LV +D +IGT+WVFRNK DE VVRNKARLVAQG+ Q E +
Sbjct: 633 IHEELNNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENRLVVRNKARLVAQGFTQVEDL 692
Query: 1189 DYDETFAPVARLEAIRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEK 1248
D+ ETF PVARLEAIRILLA+A+ IKLFQMDVKSAFLNG + E V+V QPPGF + +
Sbjct: 693 DFGETFGPVARLEAIRILLAFASCFDIKLFQMDVKSAFLNGEIAELVFVEQPPGFDDPKY 752
Query: 1249 PNHVFKLTKALYGLKQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVD 1308
PNHV+KL+KALYGLKQAPRAWY+RL FL+ F GK+DTTLF K D + Q+YVD
Sbjct: 753 PNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKVDTTLFTKIIGDDFFVCQIYVD 812
Query: 1309 DIIFGATKIKMCEEFSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKK 1368
DIIFG+T C+EF ++M EFEMSM+ EL FFLGLQIKQ +G F+SQ KYIKD+LK+
Sbjct: 813 DIIFGSTNEVFCKEFGDMMSREFEMSMIEELSFFLGLQIKQLKDGTFVSQTKYIKDLLKR 872
Query: 1369 YKMNEAKIMSTPMHPSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARF 1428
+ + +AK + TPM + LD DE GK + K YR MIGSLLYLTASRPDI+F+V + ARF
Sbjct: 873 FGLEDAKPIKTPMATNWHLDLDEGGKPVDLKLYRSMIGSLLYLTASRPDIMFSVCMYARF 932
Query: 1429 QTCAKESHLTAVKRIFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQ 1488
Q KE HL AVKRI RYL ++ + LWY KG+ F LV Y D+DYAG KV+RKSTSGSCQ
Sbjct: 933 QAAPKECHLVAVKRILRYLKHSSTISLWYPKGAKFKLVGYSDSDYAGYKVDRKSTSGSCQ 992
Query: 1489 FLGQALIGWSCRKQNTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRY--TSVPIYCD 1546
LG++L+ WS +KQN++ LST EAEY+SA SCC+Q+LW++ L DY + + T P+ C+
Sbjct: 993 MLGRSLVSWSSKKQNSVALSTAEAEYISAGSCCAQLLWMKQILLDYGISFTETQTPLLCN 1052
Query: 1547 NTSAINLSKNPIQHSRSKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
N S I ++ NP+QH R+KHI+I+HHF+ DHV K +I +S + TE+QLADIFTKPL
Sbjct: 1053 NDSTIKIANNPVQHFRTKHIDIRHHFLTDHVAKCDIVISHIRTEDQLADIFTKPL 1107
Score = 43.9 bits (102), Expect = 0.045
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 13/100 (13%)
Query: 611 WYLDSGCSRHMTGDRNCFLTF--EKKDGGLVTFGNNDKGKIRG---KGTIGNLNSAKIEN 665
W LDS C++ MTGDR F TF E K+ VTFG+N K + G K + G L ++ +
Sbjct: 162 WVLDSVCTQRMTGDRAMFTTFEVEGKEQEKVTFGDNSKRNVIGLVAKTSFGWLWHRRLAH 221
Query: 666 V---QYVEGLKHNLLSISQLCDSGFEVIFKPNICEVRQAS 702
V Q + K +L + L D FE K +C QAS
Sbjct: 222 VGMNQLSKLSKRDL--VVGLKDVKFE---KDKLCSACQAS 256
>ref|NP_912905.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 940
Score = 905 bits (2339), Expect = 0.0
Identities = 453/879 (51%), Positives = 586/879 (66%), Gaps = 39/879 (4%)
Query: 761 VRGLPKISFEKDKICEACVKGKQVKSSFKTIEFISTQKPLELLHIDLFAPVQTASLTGKR 820
+ GL I FEKD++C AC GKQ+ + ++T +PLELLH+DLF P+ S+ G +
Sbjct: 42 ILGLTNIQFEKDRVCSACQAGKQIGAHHPVKNVMTTTRPLELLHMDLFGPIAYLSIGGNK 101
Query: 821 YGFVIVDDFSRFTWVLFLKHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFK 880
YG VIVDDFS FTWV FL K E+ F+ F +R QNE I +RSD+ EF+N +
Sbjct: 102 YGLVIVDDFSCFTWVFFLHDKSETQAIFKKFARRAQNEFDLKIKNIRSDNVKEFKNTCIE 161
Query: 881 TFFDENGIKHNFSCARTPQQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYIL 940
+F DE GIKH FS +PQQNGV ERKNRTL E+ARTML+E + FWAEA+NT C+ +
Sbjct: 162 SFLDEEGIKHEFSAPYSPQQNGVAERKNRTLIEIARTMLDEYKTSDRFWAEAVNTVCHDI 221
Query: 941 NRVSIRKVLNKTPYELWKNIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYST 1000
NR+ + ++L KTPYEL KP++SYF +FG CYILN K + KF PK D LGY +
Sbjct: 222 NRLYLHRLLKKTPYELLTGNKPNVSYFRVFGSKCYILNKKARSSKFAPKVDGGFLLGYGS 281
Query: 1001 TSKGYRVYNLKTQTVEISMHIIFDE--------YDEHSKPKENEDTEA-------PTLQN 1045
YRV+N + VEI+ + FDE D H +E + EA
Sbjct: 282 NECAYRVFNKTSGIVEIAPDVTFDETNGSQVEQVDSHVLGEEEDPREAIKRLALGDVRPR 341
Query: 1046 VPVQNTENTVEKEDDQNVQ------------DQSLQSPPRSWRMVG---------DHPTD 1084
P Q ++ + E + Q ++ Q PP S + DHPTD
Sbjct: 342 EPQQGASSSTQVEPPTSTQANDPSTSSLDQGEEGEQVPPSSINLAHPRIHQSIQRDHPTD 401
Query: 1085 QIIGSTTDGVRTRLSFQD--NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVW 1142
I+G GV TR + + + +S +EP + EA+ D W+ M+EEL+ F RN+VW
Sbjct: 402 NILGDINKGVSTRSHIANFCEHYSFVSSLEPLRVEEALNDPDWVMAMQEELNNFTRNEVW 461
Query: 1143 NLVPNNQDKTIIGTRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEA 1202
LV ++ + +IGT+W+FRNK DE G V+RNKARLVAQG+ Q EG+D+ ETFAPVARLE+
Sbjct: 462 TLVERSR-QNVIGTKWIFRNKQDEAGVVIRNKARLVAQGFTQIEGLDFGETFAPVARLES 520
Query: 1203 IRILLAYAAHKSIKLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGL 1262
IRILL +A + + KL+QMDVKSAFLNG +NE VYV QPPGF + + PNHV+KL KALY L
Sbjct: 521 IRILLTFATNLNFKLYQMDVKSAFLNGLINELVYVEQPPGFKDPKYPNHVYKLHKALYEL 580
Query: 1263 KQAPRAWYDRLSTFLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEE 1322
KQAPRAWY+ L FL++NGF GK D+TLF K H+ D+ + Q+YVDDIIFG+T EE
Sbjct: 581 KQAPRAWYECLRNFLVKNGFEIGKADSTLFTKRHDNDIFVCQIYVDDIIFGSTNKSFSEE 640
Query: 1323 FSNLMQSEFEMSMMGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMH 1382
FS +M FEMSMMGEL FFLGLQIKQ G FI Q KY+KD+LKK+ M AK + TPM
Sbjct: 641 FSRMMTKRFEMSMMGELKFFLGLQIKQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMP 700
Query: 1383 PSSSLDKDESGKSISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKR 1442
+ LD +E GK + +K YR +IGSLLYL ASRPDI+ +V +CARFQ KE HL AVKR
Sbjct: 701 SNGHLDLNEQGKDVDQKVYRSIIGSLLYLCASRPDIMLSVCMCARFQAAPKECHLVAVKR 760
Query: 1443 IFRYLVGTTDLGLWYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQ 1502
I RYLV T +LGLWY KG+ FDL+ Y DADYAG KV+RKSTSG+CQFLG++L+ WS +KQ
Sbjct: 761 ILRYLVHTPNLGLWYPKGARFDLIGYADADYAGCKVDRKSTSGTCQFLGRSLVSWSSKKQ 820
Query: 1503 NTIELSTTEAEYVSAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSR 1562
N++ LST EAEY+S SCC+Q++W++ L DY L + +P+ CDN SAI ++ NP+QHSR
Sbjct: 821 NSVALSTAEAEYISTGSCCAQLIWMKQTLRDYGLNVSKIPLLCDNESAIKIANNPVQHSR 880
Query: 1563 SKHIEIKHHFIRDHVQKKNIALSFVDTENQLADIFTKPL 1601
+KHI+I+HHF+RDH + +I + V + QLADIFTKPL
Sbjct: 881 TKHIDIRHHFLRDHSTRGDIDIQHVRIDKQLADIFTKPL 919
>gb|AAL66759.1| putative pol protein [Zea mays]
Length = 1657
Score = 831 bits (2147), Expect = 0.0
Identities = 417/806 (51%), Positives = 550/806 (67%), Gaps = 44/806 (5%)
Query: 839 KHKDESFEAFQNFCKRVQNEKGYNIITVRSDHGGEFENASFKTFFDENGIKHNFSCARTP 898
K K E+ + F +R QNE + +RSD+G EF+N + F +E GIKH FS TP
Sbjct: 832 KEKSETQGTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTP 891
Query: 899 QQNGVVERKNRTLQEMARTMLNESNVENYFWAEAINTSCYILNRVSIRKVLNKTPYELWK 958
QQNGVVERKNRTL +MARTML E FW EA+NT+C+ +NRV + ++L KT YEL
Sbjct: 892 QQNGVVERKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRLLKKTSYELLT 951
Query: 959 NIKPSISYFHIFGCYCYILNNKEKLGKFDPKSDKAIFLGYSTTSKGYRVYNLKTQTVEIS 1018
+ KP++SYF +FG CYIL K + KF PK+ + LGY + +K YRV+N + VE+S
Sbjct: 952 DNKPNVSYFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVS 1011
Query: 1019 MHIIFDE--------------YDEHS--------------KPKENEDTEAP---TLQNVP 1047
++FDE DE +P+E ++ + P T+ + P
Sbjct: 1012 SDVVFDETNGSPREQVVDCDDVDEEDVPTAAIRTMAIGEVRPQEQDERDQPSSSTMVHPP 1071
Query: 1048 VQNTENTVEKE--------DDQNVQDQSLQSPPRSWRMV--GDHPTDQIIGSTTDGVRTR 1097
++ E + E DDQ +++++ +PP R + DHP DQI+G + GV TR
Sbjct: 1072 TEDDEQVPQVEALDQGGAQDDQVMEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTTR 1131
Query: 1098 LSFQD--NNMAMISQMEPKSINEAIIDDSWIEVMKEELSQFERNKVWNLVPNNQDKTIIG 1155
+ + + +S +EP + EA++D W+ M+EEL+ F+RN+VW LVP + + ++G
Sbjct: 1132 SRLVNFCEHYSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPK-QNVVG 1190
Query: 1156 TRWVFRNKLDEEGKVVRNKARLVAQGYNQQEGIDYDETFAPVARLEAIRILLAYAAHKSI 1215
T+WVFRNK DE G V RNKARLVA+GY Q G+D++ETFAPVARLE+IRILLAYAAH S
Sbjct: 1191 TKWVFRNKQDEHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHSF 1250
Query: 1216 KLFQMDVKSAFLNGFLNEEVYVSQPPGFINKEKPNHVFKLTKALYGLKQAPRAWYDRLST 1275
+L+QMDVKSAFLNG + EEVYV QPPGF ++ P+HV KL+KALYGLKQAPRAWY+ L
Sbjct: 1251 RLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLRD 1310
Query: 1276 FLIENGFSRGKIDTTLFRKTHNTDLLIVQVYVDDIIFGATKIKMCEEFSNLMQSEFEMSM 1335
FL+ N F GK D TLF KT + DL + Q+YVDDIIFG+T K CEEFS +M +FEMSM
Sbjct: 1311 FLLANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMSM 1370
Query: 1336 MGELGFFLGLQIKQHSNGIFISQEKYIKDILKKYKMNEAKIMSTPMHPSSSLDKDESGKS 1395
MGEL +FLG Q+KQ +G FISQ KY +D+LK++ M +AK TPM D ++ GKS
Sbjct: 1371 MGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGKS 1430
Query: 1396 ISEKEYRGMIGSLLYLTASRPDIVFAVGLCARFQTCAKESHLTAVKRIFRYLVGTTDLGL 1455
+ +K YR MIGSLLYL ASRPDI+ +V +CARFQ+ KE HL AVKRI RYLV T GL
Sbjct: 1431 VDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFGL 1490
Query: 1456 WYRKGSSFDLVAYCDADYAGDKVERKSTSGSCQFLGQALIGWSCRKQNTIELSTTEAEYV 1515
WY KGS+FDLV Y D+DYAG KV+RKSTSG+CQFLG++L+ W+ +KQ ++ LST EAEYV
Sbjct: 1491 WYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVSWNSKKQTSVALSTAEAEYV 1550
Query: 1516 SAASCCSQILWVRNQLEDYSLRYTSVPIYCDNTSAINLSKNPIQHSRSKHIEIKHHFIRD 1575
+A CC+Q+LW+R L D+ + VP+ CDN S I +++NP++HSR+KHI+I+HHF+RD
Sbjct: 1551 AAGQCCAQLLWMRQTLRDFGYNLSKVPLLCDNESDIRMAENPVEHSRTKHIDIRHHFLRD 1610
Query: 1576 HVQKKNIALSFVDTENQLADIFTKPL 1601
H QK +I + V TENQLADIFTKPL
Sbjct: 1611 HQQKGDIEVFHVSTENQLADIFTKPL 1636
Score = 122 bits (305), Expect = 1e-25
Identities = 115/471 (24%), Positives = 209/471 (43%), Gaps = 57/471 (12%)
Query: 10 RPPLFDGSNYYFWKGKMELFLRSQDNDMWAVITDGDFVPTTKEGAVKAKSAWSTDEKAQV 69
+PP FDG +Y FW KM L S +W ++ +G ++ + + Q+
Sbjct: 99 KPPHFDGEDYGFWSHKMRSHLFSLHPSIWEIVENGMKFDSSDSPMLINE---------QI 149
Query: 70 LLNSKARLFLSCALTMEESERVDECTNAKEVWDTLKIHHEGTSHVKETRIDIGVRKFEVF 129
N++A L +L EE +V NAK++WDTLKI HEG T++++ + F
Sbjct: 150 HRNAQATTVLLASLCREEYNKVSGLDNAKQIWDTLKISHEGNDVTMLTKMELVEGELGRF 209
Query: 130 EMSENETIDEMYARFTTIVNEMRSLGKA-YSTHDRIRKILRCLPSVWRPMVTAITQAKDL 188
M E + Y R T+VN++RS G ++ HD +R +LR + +V I +
Sbjct: 210 AMIRGEEPTQTYNRLKTLVNKIRSYGSTRWTDHDVVRLMLRSFTVLDPHLVNNIRENPRY 269
Query: 189 KSMNLEDLIGSLRAHEVVLQGDK--------PVKKVKTLALKASQQTPSVADEDVQEPQE 240
M+ E+++G + ++++ + P+ + + +ALKAS+ ++ P +
Sbjct: 270 TKMSPEEILGKFVSGRMMIKEARYVDDALNGPIHEPQPIALKASRSKEAL-------PSK 322
Query: 241 LEEVHEEEAED-ELALISKRIQRMMLRRNQIRKKFPKTNISIKTEADKSQVTCYGCNKTG 299
+ ++ D E+ALI KR + + + RK+ P KT+ K + +C+ C K G
Sbjct: 323 VAQIEAAGLNDEEMALIIKRFKTAL----RGRKEHPN-----KTKT-KGKRSCFKCGKIG 372
Query: 300 HFKNECPDIKKVQRKPPFKKKAMITWDDMEESDSQEDADTDMGLMAQSDDEEEVIIYKTD 359
HF CPD Q K K W + +++ + + +G SD
Sbjct: 373 HFIANCPDNDSDQEKKSGK------W-EKKKNYKKAKGEAHIGKEWDSD---------CS 416
Query: 360 SLYKDLENKIDSLLYDSNFLTNRCHSLIKELSEIKEEKEILQNKYDESRKTIKILQDSHF 419
S D E + S N H+ + KE+K +N S + +
Sbjct: 417 SSDSDNEGLAATAFNKSTLFPNERHTCLM----AKEKKVCTRNSTYASSSEDESSDEDEV 472
Query: 420 DMSEKQREINR-KQKGIMSVPSEVQKENILLKKEVETLKKVLTGFIKSTET 469
D S + ++R K I + + ++NILL+K+ ++L + F+++ ++
Sbjct: 473 DYSCLFKGLDRSKIDKINELIDALNEKNILLEKQEDSLYEEHDKFVEAQKS 523
Score = 39.3 bits (90), Expect = 1.1
Identities = 18/49 (36%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Query: 611 WYLDSGCSRHMTGDRNCFLTFEK----KDGGLVTFGNNDKGKIRGKGTI 655
W +DSGC+ HMTG++ F ++ K +D + GN K K +GT+
Sbjct: 793 WIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKEKSETQGTL 841
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.318 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,657,520,450
Number of Sequences: 2540612
Number of extensions: 114410958
Number of successful extensions: 437495
Number of sequences better than 10.0: 5478
Number of HSP's better than 10.0 without gapping: 2561
Number of HSP's successfully gapped in prelim test: 3027
Number of HSP's that attempted gapping in prelim test: 415607
Number of HSP's gapped (non-prelim): 17409
length of query: 1608
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1466
effective length of database: 502,593,490
effective search space: 736802056340
effective search space used: 736802056340
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 82 (36.2 bits)
Medicago: description of AC139747.5