BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139747.4 + phase: 0
(500 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativ... 187 9e-46
ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultiv... 179 1e-43
gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabid... 176 2e-42
gb|AAP52718.1| hypothetical protein [Oryza sativa (japonica cult... 172 2e-41
gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 ... 172 2e-41
emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|A... 171 5e-41
gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana] 170 8e-41
emb|CAE75954.1| B1159F04.17 [Oryza sativa (japonica cultivar-gro... 169 1e-40
gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana] 168 3e-40
emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana] g... 167 9e-40
gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana] gi... 166 1e-39
gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana] 166 2e-39
emb|CAB81134.1| putative athila transposon protein [Arabidopsis ... 162 2e-38
ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultiv... 161 4e-38
gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana] 160 7e-38
gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabid... 157 1e-36
gb|AAX95928.1| Transposable element protein, putative [Oryza sat... 155 2e-36
gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabid... 154 5e-36
ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108... 154 8e-36
gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cult... 149 2e-34
>gb|AAP44598.1| putative retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)] gi|34896534|ref|NP_909611.1| putative
retrotransposon gag protein [Oryza sativa (japonica
cultivar-group)]
Length = 697
Score = 187 bits (474), Expect = 9e-46
Identities = 134/436 (30%), Positives = 206/436 (46%), Gaps = 39/436 (8%)
Query: 32 FEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSG--TLKA-NQEAVRLHLFPFSLRDR 88
F++K +LI + Q + F G P ED N H+ FL + T+K + VRL LFPFSL R
Sbjct: 30 FDLKSSLITMAQASPFCGKPNEDANAHLQQFLEICSMYTIKGVSPNTVRLRLFPFSLLRR 89
Query: 89 ASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWERFKK 148
WF++ + +W++ AFLS+FFP KT LR +I+ F Q ES+ +AWER ++
Sbjct: 90 VKQWFYA-NCAAANTWDKCSMAFLSKFFPMGKTNALRGRISSFQQTMDESIPEAWERLQE 148
Query: 149 MLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDLIEDMAQNHYQ 208
+ CPHHG ++WLI+ FYNGL ++ ++DAAAGGA +KT GA + IE M N
Sbjct: 149 YVAACPHHGMDDWLILQNFYNGLTPMSRDHLDAAAGGAFFSKTVQGAVEFIEKMVSN-MG 207
Query: 209 WTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFD---KLTVSVVTPALVSPP 265
W+ ER+ ++ GM+ V + L K+D L+++ D K+ V
Sbjct: 208 WSEERL--------QTRQRGMHTVKETELLPAKLDLLMKRLDDHEKMPQGTVKALDSHVT 259
Query: 266 CEFCGILDHTGVECKLGRVAKSPDQNSYTFGQHTTPPVYANNERVPQKSSLEILLEKHAM 325
CE CG H G C ++ ++ Y NN ++ L K
Sbjct: 260 CEVCGDTGHPGNNC-----PETREEAMY----------MGNNNGYRRQGDLVFAQAKTTD 304
Query: 326 EQSKQFQELKNQTGSLNDSFVKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPG 385
SK+ + N S + +M+ETQ++Q+A V + PG
Sbjct: 305 SLSKKLAANDKIVENRNVKLDGFASAFQNQLCFNKMMETQLAQLASLVPANETGR--IPG 362
Query: 386 QTEANPKSLINAIQLRDGKQLED----TIMKTKTIEGEIESEKQQGEKVIGESDKPIVSP 441
Q +++ ++ + AI R GK D +T + E S ++V E P
Sbjct: 363 QPDSSIEN-VKAITTRGGKSTRDPPYPNPTRTNGLSKEAPSNGLADKEVQPEKTMPQEYC 421
Query: 442 PYKLKIHVPQRLAKPN 457
+L + PQR+ KP+
Sbjct: 422 DIRL-LPFPQRMRKPS 436
>ref|XP_475041.1| OSJNBa0042F21.11 [Oryza sativa (japonica cultivar-group)]
gi|38347309|emb|CAE02304.2| OSJNBa0042F21.11 [Oryza
sativa (japonica cultivar-group)]
Length = 920
Score = 179 bits (455), Expect = 1e-43
Identities = 127/386 (32%), Positives = 194/386 (49%), Gaps = 43/386 (11%)
Query: 47 FFGSPTEDPNLHVSIFLRLSG--TLKA-NQEAVRLHLFPFSLRDRASAWFHSLQIGSITS 103
F G P ED N H+ FL + T+K + +AVRL LFPFSL RA WF++ +I +
Sbjct: 268 FCGKPNEDANAHLLQFLEICSMYTIKGVSPDAVRLRLFPFSLLRRAKQWFYA-NCAAINT 326
Query: 104 WNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLI 163
W++ +FLS+FFP KT LR +I++F Q ES+ +AWER ++ + CPHHG ++WLI
Sbjct: 327 WDKCSTSFLSKFFPIGKTNALRGRISRFQQTRDESIPEAWERLQEYVAACPHHGMDDWLI 386
Query: 164 IHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPS 223
+ FYNGL ++ ++DAAAGGA +KT GA +LIE M N W+ ER+
Sbjct: 387 LQNFYNGLTLMSRDHLDAAAGGAFFSKTVQGAVELIEKMVSN-TGWSKERL--------Q 437
Query: 224 KKEAGMYQVSTLDHLSTKVDTLLQKFD---KLTVSVVTPALVSPPCEFCGILDHTGVEC- 279
++ GM+ V + L+ K+D L++ D K V CE CG H+G +C
Sbjct: 438 TRQRGMHTVKETELLAAKLDLLMKCLDDHEKRPQGTVKALDSHVTCEVCGGTGHSGNDCL 497
Query: 280 -------KLGRVAKSPDQNSYTFGQHTTPPVYA---NNERVPQKSSLEILLEKHAMEQSK 329
+G+ + Q G + P Y NN + SL L+ Q+K
Sbjct: 498 ETHEEAMYMGKNNEYRPQGGE--GWNQPRPYYPGGNNNGNFSNQPSLMDLV----FAQAK 551
Query: 330 QFQELKNQTGSLNDSFVKLTSKVDSIA-------IHTRMLETQISQVAQKVATSSPTLEV 382
L+ + + + + K+D A +M+ETQ++Q+A V +
Sbjct: 552 TTDALRKKLAANDKILENINVKLDGFASAFQNQLSFNKMIETQLAQLASLVPANESGR-- 609
Query: 383 FPGQTEANPKSLINAIQLRDGKQLED 408
PGQ +++ ++ + AI R GK D
Sbjct: 610 IPGQPDSSIEN-VKAITTRGGKSTRD 634
>gb|AAD15357.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354975|pir||C84493 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 929
Score = 176 bits (446), Expect = 2e-42
Identities = 158/564 (28%), Positives = 249/564 (44%), Gaps = 100/564 (17%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV V+ + F+IK LI +VQ N+F G P EDP H+ RL G K N ++ +L
Sbjct: 61 IVLRPVQNNNFKIKSGLIAMVQGNKFHGLPMEDPLDHLDELERLCGLTKINGVSEDGFKL 120
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+A W +L SIT+W+ + AFL++FF +S+TA+LR++I+ FT K ES
Sbjct: 121 RLFPFSLGDKAHLWEKTLPKNSITTWDDCKMAFLAKFFSNSRTARLRNEISGFTLKQNES 180
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHHGF +++T Y G+L +M +D A+ G + K ++L
Sbjct: 181 FCEAWERFKGYQTKCPHHGFSQASLLNTLYRGVLPKIRMLLDTASNGNFLKKDIEEGWEL 240
Query: 199 IEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFDKLT--V 254
+E++AQ+ +Y R I + K M L+ K+D ++Q K +
Sbjct: 241 VENLAQSGGNYNEDYGRSIYTSSNTDDKHHREM------KALNDKLDKIIQMQQKHVHFI 294
Query: 255 SVVTPALV----SPPCEFCGILDHTGVEC------------------KLGRVAKSPDQNS 292
S P V + C + + G LG V K Q
Sbjct: 295 SEDEPFQVQEGENDQCAEIRYVHNQGPSLPSAAAAAEPTKPFVPYNQSLGFVPKQQFQGG 354
Query: 293 YTFGQHTTPPVYANNER---VPQKSSLEILLEKHAMEQSKQFQELKNQTGSLNDSF---- 345
Y Q PP + +++ PQ S + +L++ Q+ E+ + +N+
Sbjct: 355 YQ--QQQPPPGFTPHQQQAHAPQNSDIMTVLQQLIQGQATGAMEIAKKLSKVNNKVDRQG 412
Query: 346 VKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPGQTEANPK--SLINAIQLRDG 403
V+L SK +S++ R +E +A ++P PG+ NPK S +AI +
Sbjct: 413 VELNSKFESMSTRMRYVE---GILASPSVNNNPC--QLPGKAIQNPKQYSTAHAITITHD 467
Query: 404 KQLEDTIMKTKTIEGEI--ESEKQQGEKVIGES--DKPI--------------------- 438
++L + T E + E E + V+ ++ ++PI
Sbjct: 468 RELPTRYVPTSNTEDSVILEGEDFYQDDVLADNPIEEPILTSQPTRPQAPPATPFAKKTE 527
Query: 439 ---------VSPPYKLKIHVPQR-----------LAKPNFIVIESFSTPCVIESE----T 474
V PPYK + P R L + + I +I E T
Sbjct: 528 AAKTKDIDFVPPPYKPLLPFPGRFKKVLVAKYRALLEKHIKDIPLVDCLALIHDEHKQLT 587
Query: 475 IEKAMCDLGENLRLMPLSLWERLG 498
+CDLG ++ LMPLS+ ++LG
Sbjct: 588 FNNCLCDLGASVSLMPLSVVKKLG 611
>gb|AAP52718.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|37532258|ref|NP_920431.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
gi|20279482|gb|AAM18762.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 412
Score = 172 bits (437), Expect = 2e-41
Identities = 100/280 (35%), Positives = 153/280 (53%), Gaps = 21/280 (7%)
Query: 5 RALKEYAITSSDESYDAIVYPTVEGSK--FEIKPALIYLVQQNQFFGSPTEDPNLHVSIF 62
+ L+E+A S+D + + P + F++K +LI + Q + F P ED N + F
Sbjct: 4 KTLREFATPSAD---NVAIGPQINMGDVDFDLKSSLIKMAQASPFCDKPNEDANAPLQQF 60
Query: 63 LRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHS 119
L + T + +A++L LFPFSL +A WF++ + I +W++ AF S+FFP
Sbjct: 61 LEICNTYAIKGVSPDAIKLRLFPFSLIGKAKRWFYANR-AMINTWDKCSTAFPSKFFPMG 119
Query: 120 KTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNV 179
KT LR +I+ F Q ES+ +AWER ++ + +CPHHG ++WLI+ FYNGL ++ ++
Sbjct: 120 KTNALRGRISSFQQTRDESIPEAWERLQEYVAVCPHHGMDDWLILQNFYNGLTLMSRDHL 179
Query: 180 DAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLS 239
DAAAGGA +KT GA DLIE M N W+ ER+ + GM+ V + L+
Sbjct: 180 DAAAGGAFFSKTVRGAIDLIEKMVSN-MGWSEERL--------QTHQQGMHTVKETEMLA 230
Query: 240 TKVDTLLQKF---DKLTVSVVTPALVSPPCEFCGILDHTG 276
K+D L+++ DK V CE CG H+G
Sbjct: 231 AKLDLLMKRLDDHDKRPQGTVKALDSHVTCEVCGSTGHSG 270
>gb|AAB18645.1| unknown [Hordeum vulgare] gi|7489374|pir||T06196 hypothetical
protein - barley
Length = 337
Score = 172 bits (436), Expect = 2e-41
Identities = 92/249 (36%), Positives = 144/249 (56%), Gaps = 12/249 (4%)
Query: 1 MDEKRALKEYAITSSDESYDAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVS 60
M+E L +++ T++++ + P +EI AL+ LV + QF G P+ED H++
Sbjct: 1 MNENTKLCDFSNTNNNDFISTPIAPATNAESYEINAALLNLVMKEQFSGLPSEDVASHLN 60
Query: 61 IFLRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFP 117
F+ L K + + ++L LFPFSLRDRA WF SL SI SW++ + A++S++FP
Sbjct: 61 TFIELCDMQKKKDVDNDVIKLKLFPFSLRDRAKTWFSSLPKSSIDSWDKCKDAYISKYFP 120
Query: 118 HSKTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKM 177
+K LR+ I F Q D E + AWER K M+R CP +G W+II FY GL F+++
Sbjct: 121 PAKIISLRNDIMNFKQLDHEHVAQAWERMKLMIRNCPANGLSLWMIIQIFYAGLNFASRN 180
Query: 178 NVDAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDH 237
+D+A GG M T A L++++ N+ QW +ER P SKK ++ + ++
Sbjct: 181 ILDSATGGTFMEITLGEATKLLDNIMTNYSQWHTER------SPTSKK---VHVIEEINS 231
Query: 238 LSTKVDTLL 246
LS+K+D L+
Sbjct: 232 LSSKMDELM 240
>emb|CAB81142.1| AT4g08050 [Arabidopsis thaliana] gi|5724774|gb|AAD48078.1| contains
similarity to retrotransposons; may be a pseudogene
[Arabidopsis thaliana] gi|25354718|pir||C85079
hypothetical protein AT4g08050 [imported] - Arabidopsis
thaliana
Length = 1428
Score = 171 bits (433), Expect = 5e-41
Identities = 128/404 (31%), Positives = 194/404 (47%), Gaps = 47/404 (11%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
I P ++ + FEIK LI ++Q N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IAPPAIQNNNFEIKSGLISMIQGNKFHGLPMEDPLDHLDEFDRLCNLTKINGVSEDGFKL 88
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+A W +L SIT+W+ +KAFLS+FF +++TA+LR++I F+QK GES
Sbjct: 89 RLFPFSLGDKAHIWEKNLSHDSITTWDDYKKAFLSKFFSNARTARLRNEIYGFSQKTGES 148
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHH F ++ T Y G+L +M +D A+ G NK ++L
Sbjct: 149 FCEAWERFKGYTNQCPHHSFTKASLLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGWEL 208
Query: 199 IEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFDKLTVSV 256
+E++AQ+ +Y +R + K + L+ K+D +L K +
Sbjct: 209 VENLAQSDGNYNEDCDRTVRGTADSDDKHR------KEIKALNDKLDRILLSQQKHVHFL 262
Query: 257 VTPAL-------------VSPPCEFCGILDHTGVECKLGRVAKSPDQNSYTFGQHTTPPV 303
V V P + G + V G V K Q +Y Q PP
Sbjct: 263 VDDEQYQVQDGEGNQLEEVYLPQQKQG-QNKPFVLYNQGFVPKQQFQGNY---QPPPPPG 318
Query: 304 YANNER-------VPQKSSLEILLEKHA---MEQSKQFQELKNQTGSLNDSFVKLTSKVD 353
+ + K ++ LL+ A ME +K+ EL ++ L+ S+ L +KV+
Sbjct: 319 FVTQQNQCHAAPDAKMKQMVKQLLQGQASSSMEIAKKLSELHHK---LDCSYNDLNAKVE 375
Query: 354 SIAIHTRMLETQISQVAQKVATSSPTLEVFPGQTEANPKSLINA 397
++ R LE Q +T SP + PG++ NPK A
Sbjct: 376 ALNTKVRYLE------GQSASTFSPKVTRLPGKSIQNPKEYATA 413
Score = 36.2 bits (82), Expect = 2.5
Identities = 16/35 (45%), Positives = 21/35 (59%)
Query: 463 SFSTPCVIESETIEKAMCDLGENLRLMPLSLWERL 497
SF+ PC I +CDLG ++ LMPLS+ RL
Sbjct: 576 SFTLPCSIGEFAFSDCLCDLGASVNLMPLSMARRL 610
>gb|AAF63128.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
Length = 780
Score = 170 bits (431), Expect = 8e-41
Identities = 136/499 (27%), Positives = 227/499 (45%), Gaps = 80/499 (16%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P ++ + FEIK LI ++Q N+F G P EDP H+ F R K N +++ +L
Sbjct: 29 IVPPLIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRFCSLTKINGVSEDSFKL 88
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D A W +L + S+ +W+ +KAFL++FF +S+TA+LR++I+ F QK+ ES
Sbjct: 89 RLFPFSLGDEAHLWEKTLLVDSVDTWDDCKKAFLAKFFSNSRTARLRNEISGFNQKNSES 148
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK+ CPHHGF+ ++ T Y G L +M +D + G +NK ++L
Sbjct: 149 FAEAWERFKRYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLNKDVAEGWEL 208
Query: 199 IEDMAQNHYQWTSE-----RVIADVTPPPSKK---------EAGMYQVSTLDHLSTKVDT 244
+E++AQ+ + + R +D K+ + + Q + +++ + T
Sbjct: 209 VENLAQSDGNYNEDYDRTNRGSSDSEDRHKKEIKALNDKIDKLVLAQQRNVHYITEEELT 268
Query: 245 LLQKFDKLTVSVVTPAL-----------VSPPCEFCGILDHTGVECKLGRVAKSPDQ--- 290
LQ+ + LTV V+ PP H + + VA DQ
Sbjct: 269 QLQEGENLTVEEVSYLQNQGGYNKGFNNYKPP--------HPNLSYRSNNVANPQDQVYP 320
Query: 291 ---------------NSYTFGQHTTPPVYAN--NERVPQKSSLEILLEKHAMEQSK---- 329
Y Q+ PP + + Q S ++ LL + Q+
Sbjct: 321 PQNQPPQAKPFIPYNQGYNQKQNFRPPSFTQQPQQTSAQDSEMKTLLHQLVQGQASCSIT 380
Query: 330 QFQELKNQTGSLNDSFVKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPGQ--- 386
++L T ++ S+ L K+D++ + +E I+ +TS+P PGQ
Sbjct: 381 MDKKLAELTTRIDCSYNDLNIKIDALNTRVKTMEGHIA------STSAPK---HPGQLSR 431
Query: 387 -TEANPKSLINAI-------QLRDGKQLEDTIMKTKTIEGEIESEKQQGEKVIGESDKPI 438
+ NPK +AI G Q + + E E++ E+ S+
Sbjct: 432 KSVQNPKEYAHAITTVSTSATADSGIQEGEVLRPRSRQEIELDFFALLVERAYDPSNPIR 491
Query: 439 VSPPYKLKIHVPQRLAKPN 457
+ P Y+ K + P+R+A+ N
Sbjct: 492 IPPAYEPKPYFPERIAQVN 510
>emb|CAE75954.1| B1159F04.17 [Oryza sativa (japonica cultivar-group)]
gi|38605824|emb|CAE05233.3| OSJNBa0011K22.15 [Oryza
sativa (japonica cultivar-group)]
gi|50923131|ref|XP_471926.1| OSJNBa0011K22.15 [Oryza
sativa (japonica cultivar-group)]
gi|50923095|ref|XP_471908.1| B1159F04.17 [Oryza sativa
(japonica cultivar-group)]
Length = 406
Score = 169 bits (429), Expect = 1e-40
Identities = 125/381 (32%), Positives = 187/381 (48%), Gaps = 32/381 (8%)
Query: 47 FFGSPTEDPNLHVSIFLRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITS 103
F G P ED N H+ FL + T + +AVRL LF FSL RA WF++ + +I +
Sbjct: 5 FCGKPNEDANAHLQQFLEICSTYTIKGVSPDAVRLRLFLFSLLGRAKQWFYANR-AAINT 63
Query: 104 WNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLI 163
W++ AFLS+FFP KT LR +I+ F Q ES+ +AWER ++ + CP HG ++WLI
Sbjct: 64 WDKCSTAFLSKFFPMGKTNALRGRISSFQQTRDESIPEAWERLQEYVAACPLHGMDDWLI 123
Query: 164 IHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPS 223
+ FYNGL ++ ++D AAGGA +KT GA DLIE M N W+ ER+
Sbjct: 124 LLNFYNGLTLMSRDHLDTAAGGAFFSKTVQGAVDLIEKMVSN-MGWSEERL--------Q 174
Query: 224 KKEAGMYQVSTLDHLSTKVDTLLQKFD---KLTVSVVTPALVSPPCEFCGILDHTGVECK 280
+ GM+ V + L+ K+D L+++ D K V CE C H+G +C
Sbjct: 175 THQQGMHIVKETELLAAKLDLLIKRLDDHEKQPQGTVKALDYHITCEVCSNTSHSGNDCP 234
Query: 281 LGR---VAKSPDQNSY--TFGQ--HTTPPVYA---NNERVPQKSSLEILLEKHAMEQSKQ 330
R + + N Y GQ + P Y NN +SSL+ L+ A
Sbjct: 235 ETREEAMYMGNNNNGYRPQGGQRWNQPRPYYQGGNNNGNFSNQSSLKDLVFAQAKTTDAL 294
Query: 331 FQELKNQTGSLNDSFVKL---TSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPGQT 387
++L L + VKL S + +M+ET ++Q+A V + + GQ
Sbjct: 295 SKKLAANDNILENINVKLDGFASTFQNQLSFNKMIETHLAQLASLVPANESRRVL--GQP 352
Query: 388 EANPKSLINAIQLRDGKQLED 408
+++ ++ + I R GK D
Sbjct: 353 DSSVEN-VRVIITRGGKSTRD 372
>gb|AAF67369.1| Hypothetical protein T15F17.a [Arabidopsis thaliana]
Length = 703
Score = 168 bits (426), Expect = 3e-40
Identities = 151/531 (28%), Positives = 236/531 (44%), Gaps = 62/531 (11%)
Query: 20 DAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ IV P V+ + FEIK LI +VQ N+F G P EDP H+ F RL K N ++
Sbjct: 27 NGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINGVSEDGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDG 136
+L LFPFSL D+A W SL GSITSWN +KAFL++FF +S+TA+LR+ I+ FTQ +
Sbjct: 87 KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNN 146
Query: 137 ESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAY 196
E+ +AWE FK CPHHGF ++ T Y +L +M +D A+ G +NK +
Sbjct: 147 ETFCEAWECFKGYQTQCPHHGFSKASLLSTLYRRVLPKIRMLLDTASNGNFLNKDVEDGW 206
Query: 197 DLIEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVS-TLDHLSTKV---------DT 244
+L+E++AQ+ +Y +R I + K M ++ LD L D
Sbjct: 207 ELVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDKLLLVQQKHIHFLGDDE 266
Query: 245 LLQKFDKLTVSVVTPALVSPP----CEFCGILDHTGVECK-----LGRVAKSPDQNSYTF 295
Q D T+ + V F + CK L A Q+ +
Sbjct: 267 TFQVQDGETLQSEEVSYVQNQGGYNKGFNNFKQNHPERCKPAGPSLPFTAAESTQDLCSI 326
Query: 296 ---GQHTTPPVYANNERVPQ--------KSSLEILLEKH---AMEQSKQFQELKNQTGSL 341
+ PP + ++ P K+ L+ +L+ AM+ +K+ E+ N+ G
Sbjct: 327 QPRSRQLPPPGFTQQQQQPASTTPDSDLKNMLQQILQGQAAGAMDLAKKMAEIHNKNGEA 386
Query: 342 NDSFVKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPGQTEANP----KSLINA 397
+ +D A L+ + + + V P P + A P K+ I
Sbjct: 387 STQIEISVVGLDHSAGSRSNLDEKATITERMVKRFKPA----PLPSRALPWKFRKAWIER 442
Query: 398 IQLRDGKQLEDTIMKTKTIE---------GEIESEKQQGEKVIGESDKPIVSPPYK--LK 446
KQL++ IE ++ + K+ +S+ + P + +K
Sbjct: 443 YNSLAEKQLDEMEAVMPLIEVLNLIPDPHKDVRKSILERIKIHQDSEDKCDAIPSRTTVK 502
Query: 447 IHVPQRLAKPNFIVIESFSTPCVIESETIEKAMCDLGENLRLMPLSLWERL 497
V ++L P +F+ PC I +CDLG ++ LMPLS+ +L
Sbjct: 503 RSVQEKLEDPG-----TFTQPCSIGQLVFSNCLCDLGASVSLMPLSVARKL 548
>emb|CAA57397.1| unnamed protein product [Arabidopsis thaliana]
gi|2129618|pir||S66306 hypothetical protein 1 -
Arabidopsis thaliana retrotransposon Athila
Length = 935
Score = 167 bits (422), Expect = 9e-40
Identities = 95/231 (41%), Positives = 135/231 (58%), Gaps = 11/231 (4%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P V+ + FEIK LI +VQ N+F G EDP H+ F RL K N ++ +L
Sbjct: 61 IVPPPVQNNNFEIKSGLIAMVQGNKFHGLLMEDPLDHLDEFERLCRLTKINGVSEDGFKL 120
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+A W +L GSIT+W+ +KAFL++FF +S+TA+LR++I+ FTQK ES
Sbjct: 121 RLFPFSLGDKAHLWEKTLPHGSITTWDDCKKAFLAKFFSNSRTARLRNEISGFTQKQNES 180
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHHGF+ ++ T Y G+L +M +D A+ G +NK ++L
Sbjct: 181 FCEAWERFKGYPTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 240
Query: 199 IEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQ 247
+E++AQ+ +Y +R I T K + L K+D LLQ
Sbjct: 241 VENLAQSDGNYNEDYDRSICTSTESDDKHR------REIKALHDKIDKLLQ 285
Score = 39.7 bits (91), Expect = 0.22
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 463 SFSTPCVIESETIEKAMCDLGENLRLMPLSLWERLG 498
SF+ PC I T +CDLG ++ LMPLS+ +LG
Sbjct: 649 SFTLPCSIRQLTFNNCLCDLGASVSLMPLSVARKLG 684
>gb|AAF63125.1| Similar to Athila ORF 1 [Arabidopsis thaliana]
gi|25354973|pir||A96501 hypothetical protein F2J6.11
[imported] - Arabidopsis thaliana
Length = 823
Score = 166 bits (421), Expect = 1e-39
Identities = 129/460 (28%), Positives = 215/460 (46%), Gaps = 29/460 (6%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P ++ + FEIK LI ++Q N+F G P EDP H+ F RL K N +++ +L
Sbjct: 65 IVPPPIQNNNFEIKSGLISMIQSNKFHGLPMEDPLDHLDNFDRLCSLTKINGVSEDSFKL 124
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+A W +L + S+ + + +KAFL++FF +S+TA+LR++I+ F QK+ ES
Sbjct: 125 RLFPFSLGDKAHLWEKTLPVDSVDTLDDCKKAFLAKFFSNSRTARLRNEISGFNQKNSES 184
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHHGF+ ++ T Y G L +M +D + G +NK ++L
Sbjct: 185 FAEAWERFKGYSTQCPHHGFKKASLLSTLYRGALPKIRMLLDTTSNGNFLNKDVAEGWEL 244
Query: 199 IEDMAQN------HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKFDKL 252
+E++AQ+ +Y T+ + + M +++ L+ ++ T LQK
Sbjct: 245 VENLAQSDGNYNENYDRTNRGSSDSEDRHKRRTKLLMIRLTNWCLLNREMSTTLQKKSLH 304
Query: 253 TVSVVTPALVSPPCEFCGILDHTGVECKLGRVAKS--PDQNSYTFGQHTTPPVYANNERV 310
L+ D AK P Y Q+ PP +
Sbjct: 305 NSKKGRILLLRRSNNVANPQDQVYPPQNQPPQAKPFIPYNQGYNQKQNFGPPGFTQQ--- 361
Query: 311 PQKSSLEILLEKHAMEQSKQFQELKNQTGSLNDSFVKLTSKVD----SIAIHTRMLETQI 366
PQ++S + K + Q Q Q + T ++ +LT+++D + I L T++
Sbjct: 362 PQQTSAQDSEMKTLLHQLVQGQASCSMT--MDKKLAELTTRIDCSYNDLNIKIDALNTRV 419
Query: 367 SQVAQKVATSSPTLE--VFPGQTEANPKSLINAI-------QLRDGKQLEDTIMKTKTIE 417
+ +A++S P + NPK +AI G Q + + E
Sbjct: 420 KTMEGHIASTSAPKHPGQLPRNSVQNPKEYAHAITTVSTSATADSGIQEGEVLRPRSRQE 479
Query: 418 GEIESEKQQGEKVIGESDKPIVSPPYKLKIHVPQRLAKPN 457
E++ E+ S+ + P Y+ K + P+R+A+ N
Sbjct: 480 IELDFFAWLVERAYDPSNPIRIPPAYEPKPYFPERIAQVN 519
>gb|AAF67381.1| Hypothetical protein T15F17.m [Arabidopsis thaliana]
Length = 346
Score = 166 bits (419), Expect = 2e-39
Identities = 93/231 (40%), Positives = 136/231 (58%), Gaps = 11/231 (4%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P V+ + F+IK +LI +VQ N+F G P EDP H+ F RL K N ++ +L
Sbjct: 29 IVPPPVQNNNFKIKSSLIAMVQGNKFHGLPMEDPLDHLDEFERLCDLTKINGVSEDGFKL 88
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+A W +L GSIT+W+ +K FL +FF +S+TA+L ++I+ FTQK ES
Sbjct: 89 RLFPFSLGDKAHLWEKTLPQGSITTWDDCKKVFLEKFFSNSRTARLWNEISGFTQKQNES 148
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHHGF+ ++ T Y G+L +M +D A+ G +NK ++L
Sbjct: 149 FCEAWERFKGYQTKCPHHGFKEASLLSTLYRGVLPKIRMLLDTASNGNFLNKDVEDGWEL 208
Query: 199 IEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQ 247
+E++AQ+ +Y +R I P+ E+ + L K+D LLQ
Sbjct: 209 VENLAQSDGNYNEDYDRSI------PTSTESDDKHRREIKALHEKIDKLLQ 253
>emb|CAB81134.1| putative athila transposon protein [Arabidopsis thaliana]
gi|25354974|pir||B85075 probable athila transposon
protein [imported] - Arabidopsis thaliana
Length = 866
Score = 162 bits (411), Expect = 2e-38
Identities = 87/232 (37%), Positives = 133/232 (56%), Gaps = 11/232 (4%)
Query: 20 DAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ I P ++ + FEIK LI ++Q N+F+G P EDP H+ F RL K N +
Sbjct: 27 EGIAPPAIQNNNFEIKSGLISMIQGNKFYGLPMEDPLDHLDEFDRLCNLTKINGVSADGF 86
Query: 77 RLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDG 136
+L LFPFSL D+A W +L SI +W+ +KAFLS+FF +++TA+LR++I+ F+QK G
Sbjct: 87 KLRLFPFSLGDKAHIWEKNLPHDSIITWDDCKKAFLSKFFSNARTARLRNEISGFSQKTG 146
Query: 137 ESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAY 196
ES +AWERFK CPHHGF ++ T Y G+L +M +D A+ G NK +
Sbjct: 147 ESFCEAWERFKGYTNQCPHHGFTKASMLSTLYRGVLPRIRMLLDTASNGNFQNKDVEEGW 206
Query: 197 DLIEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLL 246
+L++++AQ+ +Y +R + D K + L+ K+D +L
Sbjct: 207 ELVDNLAQSDGNYNEDCDRTVRDTADSDDKHR------KEIKALNDKLDRIL 252
Score = 38.1 bits (87), Expect = 0.65
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 449 VPQRLAKPNFIVIESFSTPCVIESETIEKAMCDLGENLRLMPLSLWERLG 498
+P++L+ P SF+ PC + + +CDLG ++ LM LS+ +RLG
Sbjct: 531 IPKKLSDPG-----SFTLPCSLGPLAFNRCLCDLGASVSLMALSVAKRLG 575
>ref|XP_474896.1| OSJNBa0021F22.23 [Oryza sativa (japonica cultivar-group)]
gi|58532094|emb|CAD40055.3| OSJNBa0085C10.7 [Oryza
sativa (japonica cultivar-group)]
gi|38346490|emb|CAE03729.2| OSJNBa0021F22.23 [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 161 bits (408), Expect = 4e-38
Identities = 141/503 (28%), Positives = 221/503 (43%), Gaps = 103/503 (20%)
Query: 5 RALKEYAITSSDESYDAIVYPTVE--GSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIF 62
+ L E+A S+D + + P V F++K +LI + Q + F G P ED N H+ F
Sbjct: 4 KTLCEFAAPSTD---NVAIGPQVNIGDVDFDLKSSLITMAQASPFCGKPNEDANAHLQQF 60
Query: 63 LRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHS 119
L + T + +AVRL LFPFSL RA WF++ ++ +I +W++ FLS+FFP
Sbjct: 61 LEICSTYTIKGVSPDAVRLRLFPFSLLGRAKQWFYANRV-AINTWDKCSTTFLSKFFPMG 119
Query: 120 KTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNV 179
KT LR +I+ F Q ES+ +AWER + + CPHHG ++WLI FYNGL ++ ++
Sbjct: 120 KTKALRGRISSFQQTRDESIPEAWERLHEYVAACPHHGMDDWLIPQNFYNGLTPMSRDHM 179
Query: 180 DAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLS 239
DAAAGGA +KT GA DLIE M + L+
Sbjct: 180 DAAAGGAFFSKTVQGAIDLIEKM-------------------------------ETELLA 208
Query: 240 TKVDTLLQKFD---KLTVSVVTPALVSPPCEFCGILDHTGVECKLGRVAKSPDQNSYTFG 296
K+D L+++ D K V CE CG H G +C R + + G
Sbjct: 209 AKLDLLMKQLDDHEKRPQGTVKALDSHATCEVCGNTGHFGNDCPESR------EEAMYMG 262
Query: 297 QHTTPPVYANNERVPQKSSLEILLEKHAMEQSKQFQELKNQTGSLNDSFVKLTSKVDSIA 356
+ NN PQ + + + N G+ S L V + A
Sbjct: 263 NN-------NNRYRPQGG--------QGWNKPCPYYQGGNNNGNNQSS---LKDLVFAQA 304
Query: 357 IHTRMLETQISQVAQKVATSSPTLEVFPGQTEA-NPKSLINAIQLRDGKQLEDTIMKTKT 415
T L +++ +K+ + P L+ T A K ++N + + L T
Sbjct: 305 KTTYALSKKLAANDKKIHINVPLLDTMQVPTYACYLKDILN-----NKRPLPTT------ 353
Query: 416 IEGEIESEKQQGEKVIGESDKPIVSPPYKLKIH-VPQRLAKPNFIVIESFSTPCVIESET 474
E+ +Q VI +H +P++ P I C I ++
Sbjct: 354 ---EVVKLTEQCSNVI---------------LHKLPEKKKDPGCPTI-----TCSIGAQQ 390
Query: 475 IEKAMCDLGENLRLMPLSLWERL 497
++A+CDLG ++ +MP ++++L
Sbjct: 391 FDQALCDLGASVSVMPKDVFDKL 413
>gb|AAF79809.1| T32E20.9 [Arabidopsis thaliana]
Length = 1586
Score = 160 bits (406), Expect = 7e-38
Identities = 139/485 (28%), Positives = 218/485 (44%), Gaps = 90/485 (18%)
Query: 20 DAIVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAV 76
+ IV P V+ + FEIK LI +VQ N+F G P EDP H+ F RL K N ++
Sbjct: 59 NGIVPPPVQNNNFEIKSGLIAMVQSNKFHGLPMEDPLDHLDEFDRLCSLTKINRVSEDGF 118
Query: 77 RLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDG 136
+L LFPFSL D+A W SL GSITSWN +KAFL++FF +S+TA+LR+ I+ FTQ +
Sbjct: 119 KLRLFPFSLGDKAHQWEKSLPQGSITSWNDCKKAFLAKFFSNSRTARLRNDISGFTQTNN 178
Query: 137 ESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAY 196
E+ Y+AWERFK CPHH +M +D A+ G +NK +
Sbjct: 179 ETFYEAWERFKGYQTQCPHH-------------------EMLLDTASNGNFLNKDVEDGW 219
Query: 197 DLIEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVS-TLDHLSTKV---------DT 244
+++E++AQ+ +Y +R I + K M ++ LD L D
Sbjct: 220 EVVENLAQSDGNYNEDYDRSIRTSSDSDEKHRREMKAMNDKLDKLLLMQQKHIHFLGDDE 279
Query: 245 LLQKFDKLTVSVVTPALVSPPCEFCGILDH------------TGVECKLGRVAKSPDQNS 292
LQ D T+ + + V + ++ T V + +V S QN
Sbjct: 280 TLQVQDGETLQLEEVSYVQNQGGYNKGFNNFKQNHPNLSYRSTNVANRQDQVYPSQQQNQ 339
Query: 293 ------YTFG--------------QHTTPPVYANNERVPQ--------KSSLEILLEKH- 323
Y G Q PP + ++ P K+ L+ +L+
Sbjct: 340 PKPFVPYNQGQGYVPKQQYQGNYQQQLPPPGFTQQQQQPALTTPDSDLKNMLQQILQGQA 399
Query: 324 --AMEQSKQFQELKNQTGSLNDSFVKLTSKVDSIAIHTRMLETQISQVAQKVATSSPTLE 381
AM+ SK+ E+ N+ ++ S+ + KV+++ R +E Q +T++P
Sbjct: 400 TGAMDLSKRMAEIHNK---VDCSYNDINIKVEALTSKIRYIEGQTG------STAAPKFT 450
Query: 382 VFPGQTEANPKSLINAIQLRDGKQLEDTIMKTKTIEGEIESEK----QQGEKVIGESDKP 437
G++ +N K +AI LR GK+L + E ++ + Q G ++P
Sbjct: 451 GPSGKSMSNSKEYAHAITLRSGKELPTKESPNQNTEDSLDQDGEDFCQNGNSAEKAIEEP 510
Query: 438 IVSPP 442
I+ P
Sbjct: 511 ILHQP 515
Score = 39.7 bits (91), Expect = 0.22
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 449 VPQRLAKPNFIVIESFSTPCVIESETIEKAMCDLGENLRLMPLSLWERLG 498
+P++L P SF+ PC + K +CDLG ++ LMPL + ++LG
Sbjct: 624 IPKKLGDPG-----SFTLPCALGPLAFSKCLCDLGASVSLMPLPVAKKLG 668
>gb|AAD19759.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|25354976|pir||E84475 probable Athila retroelement
ORF1 protein [imported] - Arabidopsis thaliana
Length = 750
Score = 157 bits (396), Expect = 1e-36
Identities = 88/231 (38%), Positives = 132/231 (57%), Gaps = 11/231 (4%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P V+ + FEIK LI +VQ N+F G P ED H+ F RL K N ++ +
Sbjct: 29 IVLPLVQNNNFEIKSGLIAMVQGNKFHGLPMEDSLDHLDEFERLCDLTKINGVSEDGFKF 88
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFSL D+ W +L SIT+W+ +KAF ++FF +S+TA+LR++I+ FTQK ES
Sbjct: 89 RLFPFSLGDKTHLWEKTLPQNSITTWDDCKKAFFAKFFSNSRTARLRNEISGFTQKQNES 148
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPH GF+ ++ T Y G+L +M +D A+ G +NK ++L
Sbjct: 149 FCEAWERFKGYQTKCPHPGFKQASLLSTLYRGVLPKLRMLLDTASNGNFLNKDVEKGWEL 208
Query: 199 IEDMAQN--HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQ 247
+E++AQ+ +Y ++ I+ + K + L+ K+D LLQ
Sbjct: 209 VENLAQSDGNYNENYDKSISTSSESDDKHH------REIKALNDKIDKLLQ 253
Score = 37.4 bits (85), Expect = 1.1
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 463 SFSTPCVIESETIEKAMCDLGENLRLMPLSLWERL 497
SF+ PC I T +CDLG ++ LMPLS+ +L
Sbjct: 610 SFTLPCSISQLTFSNCLCDLGASVSLMPLSVARKL 644
>gb|AAX95928.1| Transposable element protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 715
Score = 155 bits (393), Expect = 2e-36
Identities = 144/553 (26%), Positives = 239/553 (43%), Gaps = 95/553 (17%)
Query: 5 RALKEYAITSSDESYDAIVYPTVEGS--KFEIKPALIYLVQQNQFFGSPTEDPNLHVSIF 62
+ L E+A S+D + + P + F++K +LI + Q + F+G P ED N H+ F
Sbjct: 4 KTLCEFAAPSAD---NVAIGPQINMGVVDFDLKSSLITMAQASPFYGKPNEDANAHLQQF 60
Query: 63 LRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHS 119
L + T + AV+L LF FSL RA WF++ + ++ +W + AFLS+FFP
Sbjct: 61 LEICSTYTIKGVSPNAVKLRLFLFSLLGRAKQWFYANR-ATVNTWVKCSMAFLSKFFPMG 119
Query: 120 KTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNV 179
KT LR +I+ F Q ES+ +AWER ++ + C HHG ++ LI+ FYNGL +++ ++
Sbjct: 120 KTNALRGRISSFQQTRYESIPEAWERLQEYVAACRHHGMDDSLILQNFYNGLTPTSRDHL 179
Query: 180 DAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLS 239
DAAA G + N W+ ER+ ++ GM+ V + L+
Sbjct: 180 DAAARGMVSN-----------------MGWSEERI--------QTRQRGMHTVKETELLA 214
Query: 240 TKVDTLLQKFD---KLTVSVVTPALVSPPCEFCGILDHTGVECKLGR---VAKSPDQNSY 293
K+D L+++ D K + CE CG H+G +C R + N Y
Sbjct: 215 AKLDLLMKRLDDHEKRPQGTIKALDSHITCEVCGNTGHSGNDCLETREEAMYMGNKNNGY 274
Query: 294 T----FGQHTTPPVYA---NNERVPQKSSLEILLEKHAMEQSKQFQELKNQTGSLNDSFV 346
G P Y NN + SL+ L+ A ++L L + V
Sbjct: 275 CPQGGQGWSQPRPYYQGGNNNGNFSNQPSLKDLVFAKAKTTDALSKKLAANDKILENINV 334
Query: 347 KL---TSKVDSIAIHTRMLETQISQVAQKVATSSPTLEVFPGQTEANPKSLINAIQLRDG 403
KL S + ++ETQ++Q+A V LE G+ P S + ++
Sbjct: 335 KLDGCASAFQNQLSFNEIIETQLAQLASLV------LENETGRIPRQPGSFLENVKAITT 388
Query: 404 KQLEDTIMKTKTIEGEIESEKQQGEKVIGE-SDKPIVSPPYKLKI--------------- 447
++ + I K + E Q + V E D ++S P + +
Sbjct: 389 REGINKIAKEAPSSDSADKEDQPEKTVPQEYCDTRLLSFPQRSRKLNPEDPHQHAVVGRY 448
Query: 448 -----------HVPQRLAKPN------FIVIESFSTP------CVIESETIEKAMCDLGE 484
H Q+ PN ++ TP C I ++ ++A+CDLG
Sbjct: 449 ASTNICPLSQGHTQQQETAPNNGGGQADGALQQCHTPQAPMITCSIGAQQFDQALCDLGA 508
Query: 485 NLRLMPLSLWERL 497
++ +MP ++++L
Sbjct: 509 SVSVMPKDVFDKL 521
>gb|AAM15284.1| putative Athila retroelement ORF1 protein [Arabidopsis thaliana]
gi|20197712|gb|AAM15220.1| putative Athila retroelement
ORF1 protein [Arabidopsis thaliana]
Length = 277
Score = 154 bits (390), Expect = 5e-36
Identities = 77/187 (41%), Positives = 116/187 (61%), Gaps = 3/187 (1%)
Query: 22 IVYPTVEGSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRLSGTLKAN---QEAVRL 78
IV P V+ + FEIK LI ++Q N+F G P +DP H+ F RL G N ++ +
Sbjct: 81 IVPPPVQNNNFEIKSGLISMIQGNKFHGLPMKDPLDHLDSFDRLCGLTNINGVTEDMFKQ 140
Query: 79 HLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGES 138
LFPFS+ D+A W +L SITSW+ +KAFL++FF ++ T +LR++I+ F QK+ E+
Sbjct: 141 RLFPFSVGDKAHHWEKTLPSDSITSWDDCKKAFLAKFFSNACTTRLRNEISGFNQKNNET 200
Query: 139 LYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDL 198
+AWERFK CPHHGF+ ++ T Y G L +M +D A+ G +NK ++L
Sbjct: 201 FCEAWERFKSYTTQCPHHGFKKASLLSTLYRGALPKIRMLLDTASNGNFLNKDVVKGWEL 260
Query: 199 IEDMAQN 205
+E++AQ+
Sbjct: 261 VENLAQS 267
>ref|NP_909568.1| hypothetical protein [Oryza sativa] gi|14018108|gb|AAK52171.1|
hypothetical protein [Oryza sativa]
Length = 657
Score = 154 bits (388), Expect = 8e-36
Identities = 90/257 (35%), Positives = 134/257 (52%), Gaps = 19/257 (7%)
Query: 32 FEIKPALIYLVQQNQFFGSPTEDPNLHVSIFLRL------SGTLKANQEAVRLHLFPFSL 85
F++K +LI + Q F G P ED N H+ FL + G + +AVRL LF F L
Sbjct: 30 FDLKSSLIMMAQACPFCGEPNEDANAHLQQFLEICITYTIKGIKGVSPDAVRLRLFLFFL 89
Query: 86 RDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHSKTAQLRSQITQFTQKDGESLYDAWER 145
+ WF++ + + W++ AFLS+FFP KT L +I+ F ES+ +AWER
Sbjct: 90 LGKTKQWFYANR-AVVNIWDKCSTAFLSKFFPMGKTNALGGRISSFQLTRVESIPEAWER 148
Query: 146 FKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNVDAAAGGALMNKTFTGAYDLIEDMAQN 205
++ + +CPHHG + WLI+ FYNGL ++ ++DAAA G+ +K GA DLIE M N
Sbjct: 149 LQEYVAVCPHHGMDGWLILQNFYNGLTPMSRDHLDAAAEGSFFSKVVRGAVDLIEKMVSN 208
Query: 206 HYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLSTKVDTLLQKF---DKLTVSVVTPALV 262
W+ ER+ + GM V + L+ K+D L+++ DK +
Sbjct: 209 -MGWSEERL--------QTHQRGMCFVKETELLAAKLDLLMKRLDDHDKRPQGTIKALDS 259
Query: 263 SPPCEFCGILDHTGVEC 279
CE CG H+G +C
Sbjct: 260 HVTCEVCGGTGHSGNDC 276
>gb|AAP51916.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37530654|ref|NP_919629.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20042899|gb|AAM08727.1| Putative polyprotein [Oryza
sativa] gi|18997221|gb|AAL83338.1| Putative polyprotein
[Oryza sativa (japonica cultivar-group)]
Length = 689
Score = 149 bits (376), Expect = 2e-34
Identities = 129/472 (27%), Positives = 215/472 (45%), Gaps = 85/472 (18%)
Query: 5 RALKEYAITSSDESYDAIVYPTVE--GSKFEIKPALIYLVQQNQFFGSPTEDPNLHVSIF 62
+ L+E+A +D + + P V + F++K + I + Q + F G P ED N H+ F
Sbjct: 4 KTLREFAAPFAD---NVAIGPQVNIGDADFDLKSSHITMAQASPFCGKPNEDANAHLQQF 60
Query: 63 LRLSGTLK---ANQEAVRLHLFPFSLRDRASAWFHSLQIGSITSWNQMRKAFLSQFFPHS 119
L + T + + V+L LFPFSL RA WF++ + ++ +W++ AFLS+FFP
Sbjct: 61 LEICSTYTIKGVSPDVVKLRLFPFSLLGRAKQWFYANRT-AVNTWDKCSTAFLSKFFP-- 117
Query: 120 KTAQLRSQITQFTQKDGESLYDAWERFKKMLRLCPHHGFENWLIIHTFYNGLLFSTKMNV 179
+AWER ++ + CPH G ++WLI+ FYNGL ++ ++
Sbjct: 118 --------------------MEAWERLQEYVAACPHLGMDDWLILQNFYNGLTPMSRDHL 157
Query: 180 DAAAGGALMNKTFTGAYDLIEDMAQNHYQWTSERVIADVTPPPSKKEAGMYQVSTLDHLS 239
DAAA GA +KT GA +LIE M N W+ ER+ ++ GM+ V + L+
Sbjct: 158 DAAARGAFFSKTVQGAVELIEKMVSN-MGWSEERL--------QTRQRGMHTVKETELLA 208
Query: 240 TKVDTLLQKFD------KLTVSVVTPALVSPPCEFCGILDHTGVECKLGRVAKSPDQNSY 293
K+D L+++ D + TV + ++ CE CG H+G +C ++ ++ Y
Sbjct: 209 AKLDLLMKRLDDHEKGPQRTVKALDSHVM---CEVCGNTGHSGNDC-----LETCEEAMY 260
Query: 294 TFGQHTTPPVYANNERVPQKSSLEILLEKHAMEQSKQFQELKNQTGSLNDSFVKLTSKVD 353
+ NN PQ Q + + Q G+ N +F S D
Sbjct: 261 ---------MGNNNGYCPQGG--------QGWNQPRPYY----QGGNNNSNFPNQPSLKD 299
Query: 354 SIAIHTRMLETQISQVA--QKVATSSPTLEV--FPGQTEANPKSLINAIQLRDGKQLED- 408
+ + + ++A K+A+ P E PGQ + + ++ + AI +R GK D
Sbjct: 300 LVFAQAKTTDALSKKLAANDKLASLVPANETGRIPGQPDPSIEN-VKAITMRRGKSTRDP 358
Query: 409 ---TIMKTKTIEGEIESEKQQGEKVIGESDKPIVSPPYKLKIHVPQRLAKPN 457
+ T I S ++V E+ P +L + PQR+ KP+
Sbjct: 359 PYPNPVGTNEISKGAPSNDSADKEVQPENTVPQEYCDTRL-LSFPQRMRKPS 409
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 833,640,402
Number of Sequences: 2540612
Number of extensions: 33619180
Number of successful extensions: 91593
Number of sequences better than 10.0: 619
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 90810
Number of HSP's gapped (non-prelim): 863
length of query: 500
length of database: 863,360,394
effective HSP length: 132
effective length of query: 368
effective length of database: 527,999,610
effective search space: 194303856480
effective search space used: 194303856480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)
Medicago: description of AC139747.4