BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139745.5 + phase: 0 /pseudo
(2129 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 1803 0.0
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 1106 0.0
ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica... 904 0.0
dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera] 768 0.0
gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||... 762 0.0
gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sati... 752 0.0
ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultiva... 700 0.0
gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonic... 698 0.0
ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cu... 698 0.0
ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultiva... 696 0.0
ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultiv... 696 0.0
ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cu... 696 0.0
ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (jap... 693 0.0
ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18... 692 0.0
gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cul... 692 0.0
ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultiva... 691 0.0
gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonic... 691 0.0
ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cu... 691 0.0
ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultiva... 684 0.0
gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultiva... 682 0.0
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 1803 bits (4671), Expect = 0.0
Identities = 839/1148 (73%), Positives = 1005/1148 (87%), Gaps = 10/1148 (0%)
Query: 985 NFDFPVYEAEDEEGDD--IPYEITRLLEQEKKAIQPHQEEIELINIGTEENKQEIKIGAT 1042
+FD P+Y+AE+E +D +P E+ RLL+QE++ IQPHQEE+E++N+GTE+ +EIKIGA
Sbjct: 1121 DFDNPIYQAEEESEEDCELPAELVRLLKQEERVIQPHQEELEVVNLGTEDATREIKIGAA 1180
Query: 1043 LEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMA 1102
LE+ VK+++I++LREY +IFAWSY+DMPGLD IV HR+P + CP V+QKLRRT PDMA
Sbjct: 1181 LEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKLRRTSPDMA 1240
Query: 1103 LKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPH 1162
KIK EVQKQ DAGFL YP W+ANIVPVPKKDGKVRMCVD+RDLN+ASPKD+FPLPH
Sbjct: 1241 TKIKEEVQKQWDAGFLAVTSYPPWMANIVPVPKKDGKVRMCVDYRDLNRASPKDDFPLPH 1300
Query: 1163 IDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGAT 1222
IDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTFCYKVMPFGL NAGAT
Sbjct: 1301 IDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFCYKVMPFGLKNAGAT 1360
Query: 1223 YQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFG 1282
YQR MTTLFHDM+HKE+EVYVDDMI KS EE+H+ L K+F+RLRK+KLRLNPNKCTFG
Sbjct: 1361 YQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRLNPNKCTFG 1420
Query: 1283 VRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCG 1342
VRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFISH+TATC
Sbjct: 1421 VRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFISHLTATCE 1480
Query: 1343 PIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG 1402
PIFKLLRKNQ + WND+CQ+AFD IK YL +PPIL+PPV GRPLIMYL+V + SMGCVLG
Sbjct: 1481 PIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILIPPVPGRPLIMYLSVTENSMGCVLG 1540
Query: 1403 QQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDP 1462
+ DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT LIS+MDP
Sbjct: 1541 RHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTTLLISKMDP 1600
Query: 1463 IKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPD 1522
+KYIFEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQP+ F+FPD
Sbjct: 1601 VKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQPMMFEFPD 1660
Query: 1523 EEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARIL 1582
E+IMYLK KDC+EPL+ EGPDP+ KW L+FDGAVN G G+GAV+++P+G H+PF+AR+
Sbjct: 1661 EDIMYLKMKDCKEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAHMPFSARLT 1720
Query: 1583 FECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYAR 1642
F+ TNN AEYEACI GIEEAID+RIK LDI+GDSALV+NQ+ G+W T+ +LIPYRDY R
Sbjct: 1721 FDVTNNEAEYEACIMGIEEAIDLRIKTLDIFGDSALVVNQVNGDWNTNQPHLIPYRDYTR 1780
Query: 1643 RLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDV 1702
R+LT+F KV+L+H+PRDENQMADALATLSSM +VN WN VP + V RLERP++VFA V
Sbjct: 1781 RILTFFKKVKLYHVPRDENQMADALATLSSMIKVNWWNHVPHVAVNRLERPAYVFAAESV 1840
Query: 1703 IDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLD-GDILYKRNYD 1761
VID +PWYYDIK FL ++EYP GASK DKKTLRRLAG F L+ D+LYKRN+D
Sbjct: 1841 -------VIDEKPWYYDIKNFLKTQEYPEGASKNDKKTLRRLAGSFYLNQDDVLYKRNFD 1893
Query: 1762 MVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHK 1821
MVLLRC+D EA+ LM +VH+G+FGTHA GH M++KLLRAGYYWM ME DC++YARKCHK
Sbjct: 1894 MVLLRCMDRPEADMLMQEVHEGSFGTHAGGHAMAKKLLRAGYYWMTMESDCFKYARKCHK 1953
Query: 1822 CQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAA 1881
CQIYAD++HVPP LNVM+SPWPF+MWGIDMIG+IEP ASNGHRFILVAIDYFTKWVEAA
Sbjct: 1954 CQIYADRVHVPPSPLNVMNSPWPFAMWGIDMIGKIEPTASNGHRFILVAIDYFTKWVEAA 2013
Query: 1882 SYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRP 1941
SY N+TKQVV +FIK IICRYGVP +IITDNG+NLNN +++ LC++FKIEHHNSSPYRP
Sbjct: 2014 SYANITKQVVTRFIKKEIICRYGVPERIITDNGSNLNNKMMKELCKDFKIEHHNSSPYRP 2073
Query: 1942 QMNGAVEAANKNIKRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAV 2001
+MNGAVEAANKNIK+IV+KMV TYKDWHEMLP+ALHGYRT+VR+STGATP+SLVYGMEAV
Sbjct: 2074 KMNGAVEAANKNIKKIVRKMVVTYKDWHEMLPFALHGYRTSVRTSTGATPYSLVYGMEAV 2133
Query: 2002 LPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKV 2061
LP+EVEIPSLRV+++ KL EAEW ++R+++L+LIEE+R+ + GQ YQ RMK AFD+KV
Sbjct: 2134 LPVEVEIPSLRVLLDVKLDEAEWIRTRFNELSLIEERRLAVVCHGQLYQRRMKRAFDQKV 2193
Query: 2062 HPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVN 2121
PR +++G+LVLKR + D RGKWTPNYEGPYVVKK FSGGAL+LT MDG + P+PVN
Sbjct: 2194 RPRSYQIGDLVLKRILPPGTDNRGKWTPNYEGPYVVKKVFSGGALMLTTMDGEDFPSPVN 2253
Query: 2122 ADIVKKYF 2129
+D+VKKYF
Sbjct: 2254 SDVVKKYF 2261
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 1106 bits (2860), Expect = 0.0
Identities = 519/699 (74%), Positives = 614/699 (87%), Gaps = 4/699 (0%)
Query: 979 NPTVPPNFDF--PVYEAEDEEGDD--IPYEITRLLEQEKKAIQPHQEEIELINIGTEENK 1034
N +V +DF P+Y+AE+E +D +P E+ RLL QE++ IQPHQEE+E++N+GTE+ K
Sbjct: 1115 NNSVMAQYDFGNPIYQAEEESEEDCELPAELVRLLRQEERVIQPHQEELEVVNLGTEDAK 1174
Query: 1035 QEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKL 1094
+EIKIGA LE+ VK+++I++LREY +IFAWSY+DMPGLD IV HR+P + CP V+QKL
Sbjct: 1175 REIKIGAALEDSVKRRLIEMLREYVEIFAWSYQDMPGLDTDIVVHRLPLREGCPSVKQKL 1234
Query: 1095 RRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASP 1154
RRT PDMA KIK EVQKQ DAGFL YP WVANIVPVPKKDGKVRMCVD+RDLN+ASP
Sbjct: 1235 RRTSPDMATKIKEEVQKQWDAGFLAVTSYPPWVANIVPVPKKDGKVRMCVDYRDLNRASP 1294
Query: 1155 KDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPF 1214
KD+FPLPHIDVLVDNTAQS VFSFMDGFSGYNQIKM+PED EKT+FITPWGTF YKVMPF
Sbjct: 1295 KDDFPLPHIDVLVDNTAQSSVFSFMDGFSGYNQIKMAPEDMEKTTFITPWGTFYYKVMPF 1354
Query: 1215 GLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRL 1274
GL NAGATYQR MTTLFHDM+HKE+EVYVDDMI KS EE+H+ L K+F+RLRK+KLRL
Sbjct: 1355 GLKNAGATYQRAMTTLFHDMMHKEIEVYVDDMIAKSQTEEEHLVNLQKLFDRLRKFKLRL 1414
Query: 1275 NPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFI 1334
NPNKCTFGVRSGKLLGFIVS+KGIEVDP KV+AI+EMP P+TEKQVRGFLGRLNYI+RFI
Sbjct: 1415 NPNKCTFGVRSGKLLGFIVSEKGIEVDPAKVKAIQEMPEPKTEKQVRGFLGRLNYIARFI 1474
Query: 1335 SHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFD 1394
SH+TATC PIFKLLRKNQ + WND+CQ+AFD IK YL +PPIL PPV GRPLIMYL+V +
Sbjct: 1475 SHLTATCEPIFKLLRKNQAIKWNDDCQKAFDKIKEYLQKPPILTPPVPGRPLIMYLSVTE 1534
Query: 1395 ESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTT 1454
SMGCVLGQ DE+G+KEHAIYYLSKKFTDCETRY++LEKTCCALAWAA+RLR Y++NHTT
Sbjct: 1535 NSMGCVLGQHDESGRKEHAIYYLSKKFTDCETRYSLLEKTCCALAWAARRLRQYMLNHTT 1594
Query: 1455 WLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQ 1514
LIS+MDP+KYIFEK A+TG++ARWQM+L+EYDI + +QKAIKGSIL+D+LA QP++DYQ
Sbjct: 1595 LLISKMDPVKYIFEKPALTGRVARWQMILTEYDIQYTSQKAIKGSILSDYLAEQPIEDYQ 1654
Query: 1515 PIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHH 1574
P+ F+FPDE+IMYLK KDCEEPL+ EGPDP+ KW L+FDGAVN G G+GAV+++P+G H
Sbjct: 1655 PMMFEFPDEDIMYLKVKDCEEPLVEEGPDPDDKWTLMFDGAVNMNGNGVGAVLINPKGAH 1714
Query: 1575 IPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANL 1634
IPF+AR+ F+ TNN AEYEACI GIEEAID+RIK LDIYGDSALV+NQ+ G+W T+ +L
Sbjct: 1715 IPFSARLTFDVTNNEAEYEACIMGIEEAIDLRIKTLDIYGDSALVVNQVNGDWNTNQPHL 1774
Query: 1635 IPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSM 1673
IPYRDY RR+LT+F KV L+H+PRDENQMADALATLSSM
Sbjct: 1775 IPYRDYTRRILTFFKKVRLYHVPRDENQMADALATLSSM 1813
>ref|XP_493776.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|9927274|dbj|BAB08213.2| Similar to Arabidopsis
thaliana chromosome II BAC F26H6; putative retroelement
pol polyprotein (AC006920) [Oryza sativa (japonica
cultivar-group)]
Length = 2876
Score = 904 bits (2336), Expect = 0.0
Identities = 480/1140 (42%), Positives = 685/1140 (59%), Gaps = 37/1140 (3%)
Query: 1004 EITRLLEQEKKAIQPHQEEIELINIGTEENKQEIKIGATLEEGVKQKVIQLLREYPDIFA 1063
++ L+Q QP +E+ +N+GTE++ + I + L E ++ L E+ D FA
Sbjct: 1759 DVAGALKQLDDGGQPTIDELVEMNLGTEDDPRPIFVSGMLTEEEREDYRSFLMEFRDCFA 1818
Query: 1064 WSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEY 1123
W+Y++MPGLD + H++ P+ PV+Q RR P+ ++ EV + I+ GF+ ++Y
Sbjct: 1819 WTYKEMPGLDSRVATHKLAIDPQFRPVKQPPRRLRPEFQDQVIAEVDRLINVGFIKEIQY 1878
Query: 1124 PEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFS 1183
P W+ANIVPV KK+G+VR+CVDFRDLN+A PKD+FPLP +++VD+T S
Sbjct: 1879 PRWLANIVPVEKKNGQVRVCVDFRDLNRACPKDDFPLPITEMVVDSTTG------YGALS 1932
Query: 1184 GYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYV 1243
GYNQIKM D T+F TP G F Y VMPFGL NAGATYQR M + D+IH VE YV
Sbjct: 1933 GYNQIKMDLLDAFDTAFRTPKGNFYYTVMPFGLKNAGATYQRAMQFVLDDLIHHSVECYV 1992
Query: 1244 DDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPD 1303
DDM+VK+ D E H E L +FERLR+++L++NP KC F V+SG LGF++ +GIE++P
Sbjct: 1993 DDMVVKTKDHEHHQEDLRIVFERLRRHQLKMNPLKCAFAVQSGVFLGFVIRHRGIEIEPK 2052
Query: 1304 KVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEA 1363
K++AI MP PQ K +R G+L YI RFIS+++ P KL++K P VW++ECQ
Sbjct: 2053 KIKAILNMPPPQELKDLRKLQGKLAYIRRFISNLSGRIQPFSKLMKKGTPFVWDEECQNG 2112
Query: 1364 FDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTD 1423
FDSIK YLL PP+L PV+GRPLI+Y+A S+G +L Q ++ G KE A YYLS+
Sbjct: 2113 FDSIKRYLLNPPVLAAPVKGRPLILYIATQPASIGALLAQHNDEG-KEVACYYLSRTMVG 2171
Query: 1424 CETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLL 1483
E Y+ +EK C AL +A K+LRHY++ H LI+R DPI+Y+ + +TG++ +W +L+
Sbjct: 2172 AEQNYSPIEKLCLALIFALKKLRHYMLAHQIQLIARADPIRYVLSQPVLTGRLGKWALLM 2231
Query: 1484 SEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPD 1543
EYDI F QKAIKG LA+ LA P+ D P+ + PDEEI + ++
Sbjct: 2232 MEYDITFVPQKAIKGQALAEFLATHPMPDDSPLIANLPDEEIFTAELQE----------- 2280
Query: 1544 PNSKWGLVFDGA----VNAYG-----KGIGAVIVSPQGHHIPFTARIL-FECTNNMAEYE 1593
+W L FDGA +N G G G V +PQG I + +L EC+NN AEYE
Sbjct: 2281 ---QWELYFDGASRKDINPDGTPRRRAGAGLVFKTPQGGVIYHSFSLLKEECSNNEAEYE 2337
Query: 1594 ACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVEL 1653
A IFG+ A+ M ++ L +GDS L+I QI +E L+PY ARRL+ F +E+
Sbjct: 2338 ALIFGLLLALSMEVRSLRAHGDSRLIIRQINNIYEVRKPELVPYYTVARRLMDKFEHIEV 2397
Query: 1654 HHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDY 1713
H+PR +N ADALA L++ N I+ +R P+ + I + ++ N +
Sbjct: 2398 IHVPRSKNAPADALAKLAAALVFQGDNPAQIVVEERWLLPAVLELIPEEVNIIITNSAEE 2457
Query: 1714 RPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDM-VLLRCVDEHE 1772
W + P +++ L+R ++ +LYKR+Y VLLRCVD E
Sbjct: 2458 EDWRQPFLDYFKHGSLP--EDPVERRQLQRRLPSYIYKAGVLYKRSYGQEVLLRCVDRSE 2515
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
A +++ +VH G G H +G M + GYYW + DC + A+ CH CQI+ + H P
Sbjct: 2516 ANRVLQEVHHGVCGGHQSGPKMYHSIRLVGYYWPGIMADCLKTAKTCHGCQIHDNFKHQP 2575
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
P L+ WPF WGID+IG I P +S GHRFIL A DYF+KW EA V V
Sbjct: 2576 PAPLHPTVPSWPFDAWGIDVIGLINPPSSRGHRFILTATDYFSKWAEAVPLREVKSSDVI 2635
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F++ +II R+GVP +I +DN + + E++KI+ + S+ Y PQ NG EA NK
Sbjct: 2636 NFLERHIIYRFGVPHRITSDNAKAFKSQKIYRFMEKYKIKWNYSTGYYPQANGMAEAFNK 2695
Query: 1953 NIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2011
+ +I++K V + +DWH+ L AL YR TVR+ T ATP+SLVYG EAVLPLE+++PSL
Sbjct: 2696 TLGKILKKTVDKHRRDWHDRLYEALWAYRVTVRTPTQATPYSLVYGNEAVLPLEIQLPSL 2755
Query: 2012 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGE- 2070
RV + +L++ E + R+ +L+ +EE+R+ A+ + Y+ M A+DK V R F+ GE
Sbjct: 2756 RVAIHDELTKDEQIRLRFQELDAVEEERLGALQNLELYRQNMVRAYDKLVKQRVFRKGEL 2815
Query: 2071 -LVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
LVL+R I +GK+ P +EGPYV+++A+ GGA L G + P+N +KKYF
Sbjct: 2816 VLVLRRPIVVTHKMKGKFEPKWEGPYVIEQAYDGGAYQLIDHQGSQPMPPINGRFLKKYF 2875
>dbj|BAD18986.1| GAG-POL precursor [Vitis vinifera]
Length = 1027
Score = 768 bits (1983), Expect = 0.0
Identities = 420/1063 (39%), Positives = 616/1063 (57%), Gaps = 39/1063 (3%)
Query: 1069 MPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVA 1128
M G+ P I HR+ PVRQ++RR HPD I+NE+ K ++AGF+ V YP+W+A
Sbjct: 1 MKGIHPSITSHRLNVVSTARPVRQRIRRFHPDRQRVIRNEIDKLLEAGFIREVSYPDWLA 60
Query: 1129 NIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQI 1188
N+V VPKK+GK R+CVD+ +LN A PKD+FPLP ID +VD+T+ + SF+D FSGY+QI
Sbjct: 61 NVVVVPKKEGKWRVCVDYTNLNNACPKDSFPLPRIDQIVDSTSGQGMLSFLDAFSGYHQI 120
Query: 1189 KMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIV 1248
MSP+D EK +FITP +CYKVMPFGL NAGATYQR MT +F +I VEVY+DD++V
Sbjct: 121 PMSPDDEEKIAFITPHDLYCYKVMPFGLKNAGATYQRLMTKIFKPLIGHSVEVYIDDIVV 180
Query: 1249 KSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAI 1308
KS EQH+ +L ++F LR+Y ++LNP+KC FGV + K LGF+VSQ+GIEV PD+V+A+
Sbjct: 181 KSKTREQHILHLQEVFYLLRRYGMKLNPSKCAFGVSARKFLGFMVSQRGIEVSPDQVKAV 240
Query: 1309 REMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIK 1368
E P P+ +K+++ G+L + RFI+ P F +RK W D CQ A + IK
Sbjct: 241 METPPPRNKKELQRLTGKLVALGRFIARFIDELRPFFLAIRKAGTHGWTDNCQNALERIK 300
Query: 1369 NYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRY 1428
+YL++PPIL P+ L MYLAV + ++ VL + + K++ IYY+S+ D ETRY
Sbjct: 301 HYLMQPPILSSPIPKEKLYMYLAVSEWAISAVL-FRCPSPKEQKPIYYVSRALADVETRY 359
Query: 1429 TMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDI 1488
+ +E AL AA++LR Y H ++ P++ I K +TG++ +W + LSE+ I
Sbjct: 360 SKMELISLALRSAAQKLRPYFQAHPV-IVLTDQPLRNILHKPDLTGRMLQWAIELSEFGI 418
Query: 1489 VFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKW 1548
F+ + ++KG ++AD + +E+ +P +EG W
Sbjct: 419 EFQPRLSMKGQVMADFV----------LEYS--------------RKPGQHEGSRKKEWW 454
Query: 1549 GLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIK 1608
L DGA + G G+G ++ SP G H+ R+ F +NN AEYEA + G++ A+ + +
Sbjct: 455 TLRVDGASRSSGSGVGLLLQSPTGEHLEQAIRLGFSASNNEAEYEAILSGLDLALALSVS 514
Query: 1609 HLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALA 1668
L I+ DS LV+ ++ E+E A + Y R L FT+ + I R +N+ ADALA
Sbjct: 515 KLRIFSDSQLVVKHVQEEYEAKDARMARYLAKVRNTLQQFTEWTIEKIKRADNRRADALA 574
Query: 1669 TLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSRE 1728
+++ + +P I VQ S + + D + W DI +++ +
Sbjct: 575 GIAASLSIKEAILLP-IHVQTNPSVSEI----SICSTTEAPQADDQEWMNDITEYIRTGT 629
Query: 1729 YPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTH 1788
PG KQ K +R A RF L G LYKR++ LRC+ EA+ ++ ++H+G +G H
Sbjct: 630 L-PGDPKQAHK-VRVQAARFTLIGGHLYKRSFTGPYLRCLGHSEAQYVLAELHEGIYGNH 687
Query: 1789 ATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMW 1848
+ G +++ + GYYW M+ + Y ++C KCQ YA H+P L +S PWPF+ W
Sbjct: 688 SGGRSLAHRAHSQGYYWPTMKKEAAAYVKRCDKCQRYAPIPHMPSTTLKSISGPWPFAQW 747
Query: 1849 GIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSK 1908
G+D++ R P A +F+LVA DYF+KWVEA +Y + + V KF+ NIICR+G+P
Sbjct: 748 GMDIV-RPLPTAPAQKKFLLVATDYFSKWVEAEAYASTKDKDVTKFVWKNIICRFGIPQT 806
Query: 1909 IITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYK-D 1967
II DNG ++ + C E I + S+P PQ NG EA NK + ++K + K
Sbjct: 807 IIADNGPQFDSIAFRNFCSELNIRNSYSTPRYPQSNGQAEATNKTLITALKKRLEQAKGK 866
Query: 1968 WHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQS 2027
W E LP L YRTT TG TPF+L YGM+AV+P+E+ +P++ AK S+A
Sbjct: 867 WVEELPGVLWAYRTTPGRPTGNTPFALAYGMDAVIPIEIGLPTIWT-NAAKQSDANMQLG 925
Query: 2028 RYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPD-PRGK 2086
R L+ +E R A R YQ R +++KV PR K G LVL++ + GK
Sbjct: 926 R--NLDWTDEVRESASIRMADYQQRASAHYNRKVRPRSLKNGTLVLRKFFENTTEVGAGK 983
Query: 2087 WTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
+ N+EGPY+V KA GA L +DG L P N +K+Y+
Sbjct: 984 FQANWEGPYIVSKASDNGAYHLQKLDGTPLLRPWNVSNLKQYY 1026
>gb|AAF79618.1| F5M15.26 [Arabidopsis thaliana] gi|25402907|pir||H86337 protein
F5M15.26 [imported] - Arabidopsis thaliana
Length = 1838
Score = 762 bits (1967), Expect = 0.0
Identities = 431/1117 (38%), Positives = 633/1117 (56%), Gaps = 49/1117 (4%)
Query: 1024 ELINIGTEENKQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPT 1083
E++NI + + + +GA + ++ ++I LL+ FAWS EDM G+DP I H +
Sbjct: 759 EMVNIDESDPTRCVGVGAEISPSIRLELIALLKRNSKTFAWSIEDMKGIDPAITAHELNV 818
Query: 1084 KPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMC 1143
P PV+QK R+ P+ A + EV+K + AG ++ V+YPEW+AN V V KK+GK R+C
Sbjct: 819 DPTFKPVKQKRRKLGPERARAVNEEVEKLLKAGQIIEVKYPEWLANPVVVKKKNGKWRVC 878
Query: 1144 VDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITP 1203
VD+ DLNKA PKD++PLPHID LV+ T+ + + SFMD FSGYNQI M +D+EKTSF+T
Sbjct: 879 VDYTDLNKACPKDSYPLPHIDRLVEATSGNGLLSFMDAFSGYNQILMHKDDQEKTSFVTD 938
Query: 1204 WGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKM 1263
GT+CYKVM FGL NAGATYQR + + D I + VEVY+DDM+VKS E HVE+L+K
Sbjct: 939 RGTYCYKVMSFGLKNAGATYQRFVNKMLADQIGRTVEVYIDDMLVKSLKPEDHVEHLSKC 998
Query: 1264 FERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGF 1323
F+ L Y ++LNP KCTFGV SG+ LG++V+++GIE +P ++RAI E+P+P+ ++V+
Sbjct: 999 FDVLNTYGMKLNPTKCTFGVTSGEFLGYVVTKRGIEANPKQIRAILELPSPRNAREVQRL 1058
Query: 1324 LGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEG 1383
GR+ ++RFIS T C P + LL++ W+ + +EAF+ +K+YL PPILV P G
Sbjct: 1059 TGRIAALNRFISRSTDKCLPFYNLLKRRAQFDWDKDSEEAFEKLKDYLSTPPILVKPEVG 1118
Query: 1384 RPLIMYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAK 1443
L +Y+AV D ++ VL ++D ++ I+Y SK + ETRY ++EK A+ +A+
Sbjct: 1119 ETLYLYIAVSDHAVSSVLVREDR--GEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSAR 1176
Query: 1444 RLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILAD 1503
+LR Y +HT +++ P++ + +G++ +W + LSEYDI F+ + A+K +LAD
Sbjct: 1177 KLRPYFQSHTIAVLTD-QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLAD 1235
Query: 1504 HLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGI 1563
L PL + EE W L DG+ +A G GI
Sbjct: 1236 FLIELPLQSAERAVSGNRGEE-----------------------WSLYVDGSSSARGSGI 1272
Query: 1564 GAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQI 1623
G +VSP + + R+ F TNN+AEYE I G+ A M+I + + DS L+ Q+
Sbjct: 1273 GIRLVSPTAEVLEQSFRLRFVATNNVAEYEVLIAGLRLAAGMQITTIHAFTDSQLIAGQL 1332
Query: 1624 KGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDV- 1682
GE+E + + Y + + F +L IPR +N ADALA L+ + +D+
Sbjct: 1333 SGEYEAKNEKMDAYLKIVQLMTKDFENFKLSKIPRGDNAPADALAALA----LTSDSDLR 1388
Query: 1683 PIIRVQRLERPS-----HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQD 1737
II V+ +++PS V + + + D W +I+ +L G D
Sbjct: 1389 RIIPVESIDKPSIDSTDAVEIVNTIRSSNAPDPADPTDWRVEIRDYL-----SDGTLPSD 1443
Query: 1738 KKTLRRL---AGRFLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTM 1794
K T RRL A ++ L + L K + +L C+ E ++M + H+G G H+ G +
Sbjct: 1444 KWTARRLRIKAAKYTLMKEHLLKVSAFGAMLNCLHGTEINEIMKETHEGAAGNHSGGRAL 1503
Query: 1795 SRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIG 1854
+ KL + G+YW M DC + KC +CQ +A IH P L +P+PF W +D++G
Sbjct: 1504 ALKLKKLGFYWPTMISDCKTFTAKCEQCQRHAPTIHQPTELLRAGVAPYPFMRWAMDIVG 1563
Query: 1855 RIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNG 1914
+ AS RFILV DYFTKWVEA SY + V F+ IICR+G+P +IITDNG
Sbjct: 1564 PM--PASRQKRFILVMTDYFTKWVEAESYATIRANDVQNFVWKFIICRHGLPYEIITDNG 1621
Query: 1915 TNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTYKD-WHEMLP 1973
+ + + C +KI + S+P PQ NG EA NK I ++K + K W + L
Sbjct: 1622 SQFISLSFENFCASWKIRLNKSTPRYPQGNGQAEATNKTILSGLKKRLDEKKGAWADELD 1681
Query: 1974 YALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLN 2033
L YRTT RS+T TPF+ YGMEA+ P EV SLR M K E + D+L+
Sbjct: 1682 GVLWSYRTTPRSATDQTPFAHAYGMEAMAPAEVGYSSLRRSMMVKNPELN-DRMMLDRLD 1740
Query: 2034 LIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPD-PRGKWTPNYE 2092
+EE R A+ R Q+YQ +++KVH R F VG+LVL++ + GK N+E
Sbjct: 1741 DLEEIRNAALCRIQNYQLAAAKHYNQKVHNRHFDVGDLVLRKVFENTAEINAGKLGANWE 1800
Query: 2093 GPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
G Y V K G L M G +P N+ +K+Y+
Sbjct: 1801 GSYQVSKIVRPGDYELLTMSGTAVPRTWNSMHLKRYY 1837
>gb|AAP51864.1| putative retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530550|ref|NP_919577.1| putative
retroelement pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|18581535|gb|AAK52540.2| Putative
retroelement pol polyprotein [Oryza sativa]
Length = 1580
Score = 752 bits (1941), Expect = 0.0
Identities = 421/1105 (38%), Positives = 630/1105 (56%), Gaps = 66/1105 (5%)
Query: 1032 ENKQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVR 1091
++ +EI I + +G + +I+LL+E+ D F W Y +MPG IVEHR+P KP P +
Sbjct: 528 DDLEEIDISPAIGQG-RHLLIELLKEFRDCFTWEYYEMPGHSRSIVEHRLPLKPGVRPHQ 586
Query: 1092 QKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNK 1151
Q RR DM +K E+++ DAGF+ Y EWV++IVPV KK+GKVR+C+DFR LNK
Sbjct: 587 QLPRRCKADMLEPVKAEIKRLYDAGFIRPCRYAEWVSSIVPVIKKNGKVRVCIDFRYLNK 646
Query: 1152 ASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPW--GTFCY 1209
A+PKD +P+ D LVD + K+ SFMDG +GYNQI M+ ED KT+F P G F +
Sbjct: 647 ATPKDEYPMLVADQLVDAASGHKILSFMDGNAGYNQIFMAEEDIHKTTFRCPGAIGLFEW 706
Query: 1210 KVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRK 1269
V+ F L +AGATYQR M ++HD+I VEVY+DD++VKS + E H+ L K+FER RK
Sbjct: 707 VVITFVLKSAGATYQRAMNYIYHDLIGWLVEVYIDDVVVKSKEIEDHIADLRKVFERTRK 766
Query: 1270 YKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNY 1329
Y L++NP KC FGV +G+ LGF+V ++GIEV + AI+++ P+ + +++ +G++N+
Sbjct: 767 YGLKMNPTKCAFGVSAGQFLGFLVHERGIEVTQRSINAIKKIKPPEDKTELQEMIGKINF 826
Query: 1330 ISRFISHMTATCGPIFKLLR--KNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLI 1387
+ RFIS ++ P LLR +Q W E Q+A D+IK YL PP+L+PP +G P
Sbjct: 827 VRRFISILSGKLEPFTPLLRLKADQQFAWGAEQQKALDNIKEYLSSPPVLIPPQKGIPFR 886
Query: 1388 MYLAVFDESMGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRH 1447
+YL+ D+S+ VL Q+ E +KE ++YLS++ + ETRY+ +EK C L ++ RLRH
Sbjct: 887 LYLSAGDKSISSVLIQELE--RKERVVFYLSRRLLNAETRYSPVEKLCLCLYFSCTRLRH 944
Query: 1448 YLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAY 1507
YL+++ +I + D +KY+ + G+I +W L+E+D+ +++ KAIKG +A+ +
Sbjct: 945 YLLSNECTVICKADVVKYMLSAPILKGRIGKWIFSLTEFDLRYESPKAIKGQAIANFIV- 1003
Query: 1508 QPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVI 1567
D+ D+ I G W L FDG+V +G GIG VI
Sbjct: 1004 -----------DYRDDSI---------------GSVEVVPWTLFFDGSVCTHGCGIGLVI 1037
Query: 1568 VSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEW 1627
+SP+G F I TNN AEYEA + G++ ++ ++I GDS LVI+Q+ GE+
Sbjct: 1038 ISPRGACFEFAYTIKPYATNNQAEYEAVLKGLQLLKEVEADTIEIMGDSLLVISQLAGEY 1097
Query: 1628 ETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRV 1687
E + LI Y + + L+ F V L H+ R++N A+ LA +S +++
Sbjct: 1098 ECKNDTLIVYNEKCQELMREFRLVTLKHVSREQNIEANDLAQGASGYKL----------- 1146
Query: 1688 QRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1747
HV Q VI W Y + Q+L S+ + LR A +
Sbjct: 1147 ----MIKHV--------QIEVAVITADDWRYYVYQYL------QDPSQSASRKLRYKALK 1188
Query: 1748 FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMA 1807
++L D LY R D VLL+C+ +A+ + +VH+G GTH + H M L AGY+W
Sbjct: 1189 YILLDDELYYRTIDGVLLKCLSTDQAKVAIGEVHEGICGTHQSAHKMKWLLRCAGYFWPT 1248
Query: 1808 MEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFI 1867
M DC++Y + C CQ + P A+N + PWPF WGIDMIG I P +S GH+FI
Sbjct: 1249 MLEDCFRYYKGCQDCQKFGAIQRAPASAMNPIIKPWPFRGWGIDMIGMINPPSSKGHKFI 1308
Query: 1868 LVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCE 1927
LVA DYFTKWVEA V +F++ +II R G+P I TD G+ ++ +
Sbjct: 1309 LVATDYFTKWVEAIPLKKVDSGDAIQFVQEHIIYRVGIPQTITTDQGSIFVSDEFIQFAD 1368
Query: 1928 EFKIEHHNSSPYRPQMNGAVEAANKNIKRIVQKMVTTY-KDWHEMLPYALHGYRTTVRSS 1986
I+ NSSPY Q NG EA+NK++ +++++ ++ Y + WH L AL YR S
Sbjct: 1369 SMGIKLLNSSPYYAQANGQAEASNKSLIKLIKRKISDYPRQWHTRLAEALWSYRMACHGS 1428
Query: 1987 TGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARG 2046
P+ LVY +A+LP EV I S R ++ L+ E+ D+ + + R+ A+A+
Sbjct: 1429 IQVPPYKLVYRHKAILPWEVRIGSRRTELQNDLTADEYSNLMADEREDLVQSRLRALAKV 1488
Query: 2047 QSYQARMKTAFDKKVHPREFKVGELVLK--RKISQQPDPRGKWTPNYEGPYVVKKAFSGG 2104
+ R+ ++KKV P++F GEL+ K I + GKW+PN+EGP+ + K S G
Sbjct: 1489 IKDKERVTRHYNKKVVPKDFSEGELIWKLILPIGTRDSKFGKWSPNWEGPFQIHKVVSKG 1548
Query: 2105 ALILTHMDGVELPNPVNADIVKKYF 2129
A +L +DG +N +KKY+
Sbjct: 1549 AYMLQGLDGEVYDRALNGKYLKKYY 1573
>ref|XP_475022.1| OSJNBb0093G06.3 [Oryza sativa (japonica cultivar-group)]
gi|38347562|emb|CAE04995.2| OSJNBb0093G06.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1986
Score = 700 bits (1807), Expect = 0.0
Identities = 412/1141 (36%), Positives = 615/1141 (53%), Gaps = 59/1141 (5%)
Query: 1002 PYEITRLLEQEKKAIQPHQEEIELINIGTEEN-KQEIKIGATLEEGVKQKVIQLLREYPD 1060
P + L K+A+ +E ++ + ++EI++ AT E + I L+ D
Sbjct: 891 PRGVLSLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESAL----ITFLQNNKD 946
Query: 1061 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMT 1120
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 947 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1006
Query: 1121 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1180
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1007 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1066
Query: 1181 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1240
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1067 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1126
Query: 1241 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1300
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1127 AYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1186
Query: 1301 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1360
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1187 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1246
Query: 1361 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1416
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1247 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1306
Query: 1417 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1476
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1307 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1365
Query: 1477 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1536
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1366 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1411
Query: 1537 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1596
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1412 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1460
Query: 1597 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1656
G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H+
Sbjct: 1461 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1520
Query: 1657 PRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPW 1716
R N+ AD LA S R +DV V+ L P+ + V+ W
Sbjct: 1521 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQDADTHDVVMVEADW 1576
Query: 1717 YYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEA 1773
+FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1577 REPFIRFLSSQELP-----QDKDEAERISRRSKLYVMHESELYKKSPSGILQRCVSLEEG 1631
Query: 1774 EQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPP 1833
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1632 RQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPA 1691
Query: 1834 HALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAK 1893
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1692 QELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARD 1750
Query: 1894 FIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKN 1953
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1751 FF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGM 1809
Query: 1954 I-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEI 2008
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1810 ILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEF 1869
Query: 2009 PSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKV 2068
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F V
Sbjct: 1870 ESLRF---RNFREERYEEDRVDDLHRLEEAREAALIQSARYLQGLRRYHNRNVRSRAFLV 1926
Query: 2069 GELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKY 2128
G+LVL RKI D R K +P +EGP+++ + G+ L DG + N N + ++++
Sbjct: 1927 GDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRF 1984
Query: 2129 F 2129
+
Sbjct: 1985 Y 1985
>gb|AAP52501.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531824|ref|NP_920214.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128685|gb|AAM92798.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1986
Score = 698 bits (1802), Expect = 0.0
Identities = 409/1110 (36%), Positives = 605/1110 (53%), Gaps = 62/1110 (5%)
Query: 1034 KQEIKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQK 1093
++EI++ AT E + I L+ DIFAW DMPG+ ++EH + K + P++Q+
Sbjct: 924 REEIRLAATTESAL----ITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQR 979
Query: 1094 LRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKAS 1153
LRR D IK E+ K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+
Sbjct: 980 LRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSC 1039
Query: 1154 PKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMP 1213
PKD F LP ID +VD+TA ++ SF+D +SGY+QI++ D KTSFITP+G +CY MP
Sbjct: 1040 PKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMP 1099
Query: 1214 FGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLR 1273
FGL NAGATYQR + F I + VE YVDD++VK+ ++ + L + F +R ++++
Sbjct: 1100 FGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFASIRAFRMK 1159
Query: 1274 LNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRF 1333
LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M P T+K V+ G + +SRF
Sbjct: 1160 LNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRF 1219
Query: 1334 ISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVF 1393
+S + P FKLL+K W E Q+AF+ K L +PP+L P PL++Y++
Sbjct: 1220 VSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKQLLTKPPVLASPHPQEPLLLYVSAT 1279
Query: 1394 DESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYL 1449
+ + VL +++E G K + IY++S+ D + RY ++K + ++L HY
Sbjct: 1280 SQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKARYPQVQKLLYGILITTRKLSHYF 1339
Query: 1450 VNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQP 1509
H+ +++ P+ + G+IA+W + L DI FK + +IK LAD +A
Sbjct: 1340 QGHSVTVVTSF-PLGDVLHNREANGRIAKWALELMSLDISFKPRTSIKSQALADFVA--- 1395
Query: 1510 LDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVS 1569
++ + D P E+I + W + FDG+ G G G V++S
Sbjct: 1396 --EWTECQEDTPVEKIEH--------------------WTMHFDGSKRLSGTGAGVVLIS 1433
Query: 1570 PQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWET 1629
P G + + I F ++N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW
Sbjct: 1434 PTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSC 1493
Query: 1630 HHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQR 1689
N++ YR R+L F +EL H+ R N+ AD LA S R +DV V+
Sbjct: 1494 IDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRLANFGSK-RETAPSDV---FVEH 1549
Query: 1690 LERPS--HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR 1747
L P+ H D D +++ W +FL S+E P QDK R++ R
Sbjct: 1550 LYTPTVPHKDTTQDA-DTRNIAMVE-ADWREPFIRFLTSQELP-----QDKDEAERISRR 1602
Query: 1748 ---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYY 1804
++L LYK++ +L RCV E QL+ D+H G G HA T+ K R G++
Sbjct: 1603 SKLYVLHESELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFF 1662
Query: 1805 WMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGH 1864
W D + R C CQ +A +IH+P L + WPF++WG+DM+G + KA G+
Sbjct: 1663 WPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGY 1721
Query: 1865 RFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQA 1924
+ VAID F+KW+EA +T F NI+ R+GVP++IITDNGT V +
Sbjct: 1722 THLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKD 1780
Query: 1925 LCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGY 1979
CE+F I+ +S P NG VE AN I R+ ++ W + LP L
Sbjct: 1781 FCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSL 1840
Query: 1980 RTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKR 2039
RTT +TG +PF LVYG EA+LP EVE SLR E + + R D L+ +EE R
Sbjct: 1841 RTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEVR 1897
Query: 2040 MDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKK 2099
A+ + Y ++ ++ V R F VG+LVL RKI D R K +P +EGP+++ +
Sbjct: 1898 EAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQTTRD-RHKLSPLWEGPFIISE 1955
Query: 2100 AFSGGALILTHMDGVELPNPVNADIVKKYF 2129
G+ L DG + N N + +++++
Sbjct: 1956 VTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1985
>ref|XP_475587.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46391119|gb|AAS90646.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1991
Score = 698 bits (1802), Expect = 0.0
Identities = 407/1138 (35%), Positives = 614/1138 (53%), Gaps = 53/1138 (4%)
Query: 1002 PYEITRLLEQEKKAIQPHQEEIELINIGTEEN-KQEIKIGATLEEGVKQKVIQLLREYPD 1060
P + L K+A+ +E ++ + ++EI++ AT E + I L+ D
Sbjct: 896 PRGVLTLRSDIKQAVTCDKESCDMAQTREMASAREEIRLAATTESAL----ITFLQNNKD 951
Query: 1061 IFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMT 1120
IFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 952 IFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKE 1011
Query: 1121 VEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMD 1180
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D
Sbjct: 1012 VLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLD 1071
Query: 1181 GFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVE 1240
+SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE
Sbjct: 1072 CYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVE 1131
Query: 1241 VYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEV 1300
YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1132 AYVDDVVVKTKQKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQA 1191
Query: 1301 DPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDEC 1360
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1192 NPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEA 1251
Query: 1361 QEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYY 1416
Q+AF+ K L +PP+L P PL++Y++ + + VL +++E G K + IY+
Sbjct: 1252 QKAFEDFKQLLTKPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYF 1311
Query: 1417 LSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKI 1476
+S+ D +TRY ++K + ++L HY H+ +++ P+ + G+I
Sbjct: 1312 VSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDVLHNREANGRI 1370
Query: 1477 ARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEP 1536
A+W + L DI FK + +IK LAD +A ++ + D P E+I +
Sbjct: 1371 AKWALELMSLDISFKPRTSIKSQALADFVA-----EWTECQEDTPVEKIEH--------- 1416
Query: 1537 LINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACI 1596
W + FDG+ G G G V++SP G + + I F ++N+AEYEA +
Sbjct: 1417 -----------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALL 1465
Query: 1597 FGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHI 1656
G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H+
Sbjct: 1466 HGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCIDDNMMAYRQEVRKLEDKFDGLELSHV 1525
Query: 1657 PRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPW 1716
R N+ AD LA S R +DV V+ L P+ + + + W
Sbjct: 1526 LRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQVADTHDIAMVEADW 1581
Query: 1717 YYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDILYKRNYDMVLLRCVDEHEAEQL 1776
+ +FL S+E P K + + + R + +++ LYK++ +L RCV E QL
Sbjct: 1582 REPLIRFLTSQELP--QYKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQL 1639
Query: 1777 MHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHAL 1836
+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P L
Sbjct: 1640 LKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQEL 1699
Query: 1837 NVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIK 1896
+ WPF++WG+DM+G + KA G+ + +AID F+KW+EA +T F
Sbjct: 1700 QTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFMAIDKFSKWIEAKPVVTITADNARDFF- 1757
Query: 1897 NNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-- 1954
NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I
Sbjct: 1758 INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQ 1817
Query: 1955 ---KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSL 2011
R+ ++ W LP L RTT +TG +PF LVYG EA+LP EVE SL
Sbjct: 1818 RIKARVFDRLKPYAGKWVSQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESL 1877
Query: 2012 RVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGEL 2071
R E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+L
Sbjct: 1878 RF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDL 1934
Query: 2072 VLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
VL RKI D R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1935 VL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHIRRFY 1990
>ref|XP_474675.1| OSJNBa0027O01.4 [Oryza sativa (japonica cultivar-group)]
gi|38346188|emb|CAD39529.2| OSJNBa0027O01.4 [Oryza sativa
(japonica cultivar-group)]
Length = 2013
Score = 696 bits (1797), Expect = 0.0
Identities = 415/1130 (36%), Positives = 607/1130 (52%), Gaps = 62/1130 (5%)
Query: 1020 QEEIELINIGTEENK-QEIKIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 925 REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 984
Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 985 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1044
Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1045 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1104
Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1105 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1164
Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 1165 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1224
Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1225 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1284
Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1285 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1344
Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
Y ++K + ++L HY H+ +++ P+ I V G+IA+W + L D
Sbjct: 1345 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREVNGRIAKWALELMSLD 1403
Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
I FK + +IK LAD +A ++ + D P E + +
Sbjct: 1404 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1438
Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1439 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1498
Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
K L + GDS LV+NQ+ EW N++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1499 KRLIVRGDSQLVVNQVMKEWSYLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1558
Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
A S R +DV V+ L P+ + + + W + +FL S+
Sbjct: 1559 ANFGSK-REAAPSDV---FVEHLYTPTVPHKDTTQVAGTHDAAMVEVDWREPLIRFLTSQ 1614
Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
E P QDK R++ R ++L LYK++ +L RCV E QL+ D+H G
Sbjct: 1615 ELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1669
Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
G HA T+ K R G++W D + R C CQ +A +IH+P L + WP
Sbjct: 1670 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1729
Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
F++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R+G
Sbjct: 1730 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1787
Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
VP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1788 VPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1847
Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1848 RLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1904
Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL RKI
Sbjct: 1905 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1963
Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
D R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1964 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2012
>ref|XP_473950.1| OSJNBa0053K19.16 [Oryza sativa (japonica cultivar-group)]
gi|38344177|emb|CAE03508.2| OSJNBa0053K19.16 [Oryza
sativa (japonica cultivar-group)]
Length = 2010
Score = 696 bits (1796), Expect = 0.0
Identities = 410/1130 (36%), Positives = 606/1130 (53%), Gaps = 62/1130 (5%)
Query: 1020 QEEIELINIGTEENKQEI-KIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
+E+I L E ++ KI + E K K I L P DIFAW DMPG
Sbjct: 922 REDIRLAAATASEGEEPATKISKSGESEAKTKKIPLDPSDPAKTANNKDIFAWKPSDMPG 981
Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 982 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1041
Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1042 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGRELLSFLDCYSGYHQIRLK 1101
Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1102 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1161
Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
++ + L + F +R ++++LNP KCTFGV SGKL+GF+VS +GI+ +P+KV AI M
Sbjct: 1162 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLVGFMVSHRGIQANPEKVTAILNM 1221
Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1222 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLL 1281
Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1282 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1341
Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1342 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1400
Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
I FK + +IK LAD +A ++ + D P E + +
Sbjct: 1401 ISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------------------- 1435
Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1436 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1495
Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
K L + GDS LV+NQ+ EW N++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1496 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1555
Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
A S V + + V+ L P+ + + + W + +FL S+
Sbjct: 1556 ANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVETDWREPLIRFLTSQ 1611
Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H G
Sbjct: 1612 ELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLQDIHSGI 1666
Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
G HA T+ K R G++W D + R C CQ +A +IH+P L + WP
Sbjct: 1667 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1726
Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
F++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R+G
Sbjct: 1727 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1784
Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
VP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1785 VPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1844
Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1845 RLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1901
Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL RKI
Sbjct: 1902 REERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1960
Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
D R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1961 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 2009
>ref|XP_463537.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2001
Score = 696 bits (1795), Expect = 0.0
Identities = 392/1097 (35%), Positives = 620/1097 (55%), Gaps = 56/1097 (5%)
Query: 1037 IKIGATLEEGVKQKVIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRR 1096
I IG LE+ ++++++++++E +FAWS +++ G+D ++EH + K P +QKLRR
Sbjct: 956 ILIGENLEKHIEEEILKVVKENMAVFAWSPDELQGVDRSLIEHNLAIKSGYKPKKQKLRR 1015
Query: 1097 THPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKD 1156
D K E++K + A + V +PEW+AN V V K +GK RMC+DF DLNKA PKD
Sbjct: 1016 MSTDRQQAAKIELEKLLKAKVIREVMHPEWLANPVLVKKANGKWRMCIDFTDLNKACPKD 1075
Query: 1157 NFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGL 1216
+FPLP ID LVD TA ++ SF+D +SGY+Q+ M ED EKTSFITP+GT+C+ MPFGL
Sbjct: 1076 DFPLPRIDQLVDATAGCELMSFLDAYSGYHQVFMVKEDEEKTSFITPFGTYCFIRMPFGL 1135
Query: 1217 INAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNP 1276
NAGAT+ R + + + + VE Y+DD++VKS H + L + FE LRK ++LNP
Sbjct: 1136 KNAGATFARLIGKVLAKQLGRNVEAYIDDIVVKSKQAFTHGKDLQETFENLRKCSVKLNP 1195
Query: 1277 NKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISH 1336
KC FGVR+GKLLGF+VS++GIE +PDK+ AI +M P+ ++V+ GR+ +SRF+S
Sbjct: 1196 EKCVFGVRAGKLLGFLVSKRGIEANPDKIAAIHQMEPPKNTREVQRLTGRMASLSRFLSK 1255
Query: 1337 MTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDES 1396
P FK LR W ECQ+AFD +K YL E P L P +G+PL+MY+A +
Sbjct: 1256 SAEKGLPFFKTLRGANTFEWTAECQQAFDDLKKYLHEMPTLASPPKGQPLLMYVAATPAT 1315
Query: 1397 MGCVLGQQDETGKKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWL 1456
+ VL Q++E ++ +Y++S+ +TRY+ +EK A+ A+++LRHY ++H +
Sbjct: 1316 VSAVLVQEEE--NRQVPVYFVSEALQGPKTRYSEVEKLIYAIVMASRKLRHYFLSHDITI 1373
Query: 1457 ISRMDPIKYIFEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPI 1516
S PI + V G+IA+W M L +D+ + ++ AIK +LAD +A ++ P
Sbjct: 1374 PSAY-PIGEVLTNKEVAGRIAKWAMELLPFDLKYISRTAIKSQVLADFVA-----EWTPN 1427
Query: 1517 EFDFPDEEIMYLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIP 1576
E + + ++ ++P W + DGA NA G G AV+ +P +
Sbjct: 1428 EVE---------QQEEVKKP-----------WIVFSDGACNAAGAGAAAVVKTPMKQTLK 1467
Query: 1577 FTARILFECTNNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIP 1636
++ +++F TNN AEYE + + +A + + L + DS LV +E +
Sbjct: 1468 YSVQLVFPSTNNTAEYEGVLLAMRKARALGARRLIVKTDSKLVAGHFSKSFEAKEETMAK 1527
Query: 1637 YRDYARRLLTYFTKVELHHIPRDENQMADALATLSSMFR--VNHWNDVPIIRVQRLERPS 1694
Y + AR +F + + I R+EN AD LA ++ + N + D+ + +PS
Sbjct: 1528 YLEEARLNEKHFLGITVKAITREENGEADELAKAAATGQPLENSFFDI-------ITQPS 1580
Query: 1695 HVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGRFLLDGDI 1754
+ I + G+ W I ++L+S + P +++ K ++ ++ ++ +
Sbjct: 1581 YEKKEVACIQREGD-------WREPILKYLVSAQLP--EKEEEAKRIQLMSKKYKVVEGQ 1631
Query: 1755 LYKRNYDMVLLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQ 1814
LYK LL+CV E +++ ++H+G G H +++ K++R G YW + D +
Sbjct: 1632 LYKSGVTAPLLKCVTREEGMKMVVEIHEGLCGAHQAPWSVASKVIRQGIYWPTIMKDTEK 1691
Query: 1815 YARKCHKCQIYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYF 1874
Y + C CQ + PP L + WPF WGID++G + P+A RF++VAI+YF
Sbjct: 1692 YIKTCKACQKFGPMTKAPPKELQPIPPVWPFYRWGIDIVGPL-PRAKGDLRFVIVAIEYF 1750
Query: 1875 TKWVEAASYTNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHH 1934
++W+EA + +T V KF+ NIICR+G+P +I+ DNG + Q +C+ ++ +
Sbjct: 1751 SRWIEAEAVARITSAAVQKFVWKNIICRFGIPKEIVCDNGKQFESGKFQDMCKGLNLQIN 1810
Query: 1935 NSSPYRPQMNGAVEAANKNIKRIVQKMV--TTYKDWHEMLPYALHGYRTTVRSSTGATPF 1992
+S PQ NG VE AN I ++K + + W E L L RTTV STG TPF
Sbjct: 1811 FASVGHPQTNGVVERANGKIMEAIKKRLEGSAKGKWPEDLLSVLWALRTTVVRSTGMTPF 1870
Query: 1993 SLVYGMEAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQAR 2052
LVYG EA+ P EV S R+I + K E R L +++E R++A+ + SY
Sbjct: 1871 RLVYGDEAMTPSEVGAHSPRMIFDQKDEE-----GREITLEMLDEIRVEALEKMASYTEG 1925
Query: 2053 MKTAFDKKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMD 2112
K+ +++KV R + G+LVLK+ +++ GK +EGP++VKK GA L ++D
Sbjct: 1926 TKSYYNQKVKTRPIEEGDLVLKKVLNEV--AVGKLESKWEGPFIVKKKTETGAFKLAYLD 1983
Query: 2113 GVELPNPVNADIVKKYF 2129
G EL + NA +KK++
Sbjct: 1984 GEELKHTWNAVSLKKFY 2000
>ref|NP_918169.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2012
Score = 693 bits (1789), Expect = 0.0
Identities = 402/1082 (37%), Positives = 590/1082 (54%), Gaps = 54/1082 (4%)
Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 972 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1031
Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
V +P+W+AN V V KK G+ MCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1032 EVLHPDWLANPVLVRKKTGQWLMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1091
Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1092 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1151
Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1152 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1211
Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
+P+KV AI M +P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1212 ANPEKVTAILNMKSPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDSFRWGPE 1271
Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1272 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1331
Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1332 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1390
Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1391 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1437
Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1438 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1485
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
+ G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H
Sbjct: 1486 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1545
Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
+ R N+ AD LA S R +DV V+ L P+ A + +
Sbjct: 1546 VLRHNNEAADRLANFGSK-REAAPSDV---FVEHLYSPTVPHKDATQAAGAHDVAMVEAD 1601
Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
W + +FL S+E P QDK R++ R ++L LYK++ +L RCV E
Sbjct: 1602 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVLHEAELYKKSPSGILQRCVSLEE 1656
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1657 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1716
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1717 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1775
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1776 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1834
Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1835 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTSSRATGQSPFFLVYGAEAMLPSEVE 1894
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F
Sbjct: 1895 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1951
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
VG+LVL RKI D R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1952 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 2009
Query: 2128 YF 2129
++
Sbjct: 2010 FY 2011
>ref|XP_470757.1| putative gag-pol precursor [Oryza sativa] gi|18071370|gb|AAL58229.1|
putative gag-pol precursor [Oryza sativa]
Length = 2026
Score = 692 bits (1787), Expect = 0.0
Identities = 398/1082 (36%), Positives = 588/1082 (53%), Gaps = 54/1082 (4%)
Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVHHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPE 1276
Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1395
Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
+ G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
+ R N+ AD LA S V + + V+ L P+ + + +
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGTHDVAMVEAD 1606
Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAP 1780
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDCCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
VG+LVL RKI D R K +P +EGP+++ G+ L DG + N N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISAVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014
Query: 2128 YF 2129
++
Sbjct: 2015 FY 2016
>gb|AAP53095.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533012|ref|NP_920808.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
gi|19881590|gb|AAM00991.1| Putative retroelement [Oryza
sativa]
Length = 2017
Score = 692 bits (1785), Expect = 0.0
Identities = 398/1082 (36%), Positives = 587/1082 (53%), Gaps = 54/1082 (4%)
Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
V +P+W+AN V V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1217 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFHWGPE 1276
Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEDGHVQKVQRPIY 1336
Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
++S+ D +TRY ++K + ++L HY H +++ P+ I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHLVTVVTSF-PLGDILHNREANGR 1395
Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKVEH-------- 1442
Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
+ G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
+ R N+ AD LA S V + + V+ L P+ + + +
Sbjct: 1551 VLRHNNKAADRLANFGSKREVAPSD----VFVEHLYAPTVPHKDTTQVAGTHDVAMVEAD 1606
Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSRLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAFGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
I R+ ++ W E LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1900 FESLRF---RNFREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
VG+LVL RKI D R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLIDNSWNIEHLRR 2014
Query: 2128 YF 2129
++
Sbjct: 2015 FY 2016
>ref|XP_475035.1| OSJNBa0042F21.5 [Oryza sativa (japonica cultivar-group)]
gi|38347303|emb|CAE02298.2| OSJNBa0042F21.5 [Oryza sativa
(japonica cultivar-group)]
Length = 1950
Score = 691 bits (1784), Expect = 0.0
Identities = 399/1082 (36%), Positives = 586/1082 (53%), Gaps = 54/1082 (4%)
Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 910 DIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 969
Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+
Sbjct: 970 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFL 1029
Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1030 DCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1089
Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1090 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1149
Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
+P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K W E
Sbjct: 1150 ANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDNFQWGPE 1209
Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
Q+AF+ K L EPPIL P PL++Y++ + + VL +++E G K + IY
Sbjct: 1210 AQKAFEDFKKLLTEPPILASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIY 1269
Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
++S+ D +TRY ++K + ++L HY H+ +++ P+ I G+
Sbjct: 1270 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGR 1328
Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
IA+W + L DI FK + +IK LAD +A ++ + D P E + +
Sbjct: 1329 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENMEH-------- 1375
Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1376 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1423
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
+ G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H
Sbjct: 1424 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1483
Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
+ R N+ AD LA S + + + V+ L P+ + +
Sbjct: 1484 VLRHNNEAADRLANFGSKREMAPSD----VFVEHLYTPTVPHKDTTQDADTHDVALVEAD 1539
Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
W +FL S+E P QDK R++ R + + LYK++ +L RCV E
Sbjct: 1540 WREPFIRFLTSQELP-----QDKDEAERISRRSKLYAMHEAELYKKSPSGILQRCVSLEE 1594
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1595 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1654
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1655 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1713
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F NI+ R+GVP++IITDNGT V + CE+F I+ +S P NG VE AN
Sbjct: 1714 DFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1772
Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1773 MILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1832
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
SLR E + + R D L+ +EE R A+ R Y ++ ++ V R F
Sbjct: 1833 FESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHNRNVRSRAFL 1889
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
VG+LVL RKI D R K +P +EGP+++ + G+ L DG + N N + +++
Sbjct: 1890 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRR 1947
Query: 2128 YF 2129
++
Sbjct: 1948 FY 1949
>gb|AAP52499.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37531820|ref|NP_920212.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|22128689|gb|AAM92802.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 2017
Score = 691 bits (1782), Expect = 0.0
Identities = 412/1132 (36%), Positives = 606/1132 (53%), Gaps = 66/1132 (5%)
Query: 1020 QEEIELINIGTEENK-QEIKIGATLEEGVKQKVIQLLREYP-------DIFAWSYEDMPG 1071
+E+I L E + KI + E K K I L P DIFAW DMPG
Sbjct: 929 REDIRLAAATASEGEVPATKISKSGESEAKTKKIPLDPSDPTKTANNKDIFAWKPSDMPG 988
Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 989 IPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 1048
Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 1049 LVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 1108
Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
D KTSFITP+G +CY MPFGL NAGATYQR + F I + VE YVDD++VK+
Sbjct: 1109 ESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVVKTK 1168
Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 1169 QKDDLILDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 1228
Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K L
Sbjct: 1229 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKLL 1288
Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG---KKEHAIYYLSKKFTDCETR 1427
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1289 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1348
Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1349 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1407
Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
+ FK + +IK LAD +A + +C+E + +
Sbjct: 1408 LSFKPRISIKSQALADFVA----------------------EWTECQEDTTVKKME---H 1442
Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1443 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1502
Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
K L + GDS LV+NQ+ EW N+ YR R+L F +EL H+ R +N+ AD L
Sbjct: 1503 KRLIVRGDSQLVVNQVMKEWSCLDDNMKAYRQEVRKLEDKFDGLELSHVLRHDNEAADRL 1562
Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAG--ENVIDYRPWYYDIKQFLL 1725
A S V + + V+ L P+ D AG + + W + +FL
Sbjct: 1563 ANFGSKREVAPSD----VFVEHLYTPT--VPHKDTTQAAGIHDVAMVETDWREPLIRFLT 1616
Query: 1726 SREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHD 1782
S+E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H
Sbjct: 1617 SQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHS 1671
Query: 1783 GTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSP 1842
G G HA T+ K R G++W D + R C CQ +A +IH+P L +
Sbjct: 1672 GICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLS 1731
Query: 1843 WPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICR 1902
WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R
Sbjct: 1732 WPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHR 1789
Query: 1903 YGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRI 1957
+GVP++IITDNGT V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1790 FGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARV 1849
Query: 1958 VQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEA 2017
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1850 FDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---R 1906
Query: 2018 KLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKI 2077
E + + R D L+ +EE R A+ R Y ++ ++ V R F VG+LVL RKI
Sbjct: 1907 NFREERYEEDRVDDLHRLEEVREAALIRSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKI 1965
Query: 2078 SQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
D R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1966 QTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEYLRRFY 2016
>ref|XP_475120.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|46063437|gb|AAS79740.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1756
Score = 691 bits (1782), Expect = 0.0
Identities = 408/1130 (36%), Positives = 603/1130 (53%), Gaps = 62/1130 (5%)
Query: 1020 QEEIEL-INIGTEENKQEIKIGATLEEGVKQKVIQL-------LREYPDIFAWSYEDMPG 1071
+E+I L + +E KI + E K K I L DIFAW DMPG
Sbjct: 668 REDIRLAVATASEGEVPATKISKSGESEAKTKKIPLDPSDSTKTANNKDIFAWKPSDMPG 727
Query: 1072 LDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLMTVEYPEWVANIV 1131
+ ++EH + K + P++Q+LRR D IK E+ K + AGF+ V +P+W+AN V
Sbjct: 728 IPREVIEHSLHVKEDAKPIKQRLRRFVQDRKDAIKEELTKLLAAGFIKEVLHPDWLANPV 787
Query: 1132 PVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFMDGFSGYNQIKMS 1191
V KK G+ RMCVD+ DLNK PKD F LP ID +VD+TA ++ SF+D +SGY+QI++
Sbjct: 788 LVRKKTGQWRMCVDYTDLNKCCPKDPFGLPRIDQVVDSTAGCELLSFLDCYSGYHQIRLK 847
Query: 1192 PEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEVEVYVDDMIVKST 1251
D KTSFITP G +CY MPFGL NAGATYQR + F I + VE YVDD+++K+
Sbjct: 848 ESDCLKTSFITPIGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNVEAYVDDVVIKTK 907
Query: 1252 DEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIEVDPDKVRAIREM 1311
++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+ +P+KV AI M
Sbjct: 908 QKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQANPEKVTAILNM 967
Query: 1312 PAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDECQEAFDSIKNYL 1371
P T+K V+ G + +SRF+S + P FKLL+K W E Q+AF+ K +L
Sbjct: 968 KPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPEAQKAFEDFKKFL 1027
Query: 1372 LEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIYYLSKKFTDCETR 1427
EPP+L P PL++Y++ + + VL +++E G K + IY++S+ D +TR
Sbjct: 1028 TEPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFVSEVLADSKTR 1087
Query: 1428 YTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGKIARWQMLLSEYD 1487
Y ++K + ++L HY H+ +++ P+ I G+IA+W + L D
Sbjct: 1088 YPQVQKLLYGILITTRKLSHYFQGHSVTVVTSF-PLGDILHNREANGRIAKWALELMSLD 1146
Query: 1488 IVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEEPLINEGPDPNSK 1547
I FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1147 ISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------------------- 1181
Query: 1548 WGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEACIFGIEEAIDMRI 1607
W + FDG+ G G G V++SP G + + I F ++N+AEYEA + G+ AI + I
Sbjct: 1182 WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGI 1241
Query: 1608 KHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHHIPRDENQMADAL 1667
K L + GDS LV+NQ+ EW N++ YR R+L F +EL H+ R N+ AD L
Sbjct: 1242 KRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEAADRL 1301
Query: 1668 ATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRPWYYDIKQFLLSR 1727
A S V + + V+ L P+ I + + W +FL S+
Sbjct: 1302 ANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEADWREPFIRFLTSQ 1357
Query: 1728 EYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHEAEQLMHDVHDGT 1784
E P QDK R++ R +++ LYK++ +L RCV E QL+ D+H G
Sbjct: 1358 ELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGI 1412
Query: 1785 FGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVPPHALNVMSSPWP 1844
G HA T+ K R G++W D + R C CQ +A +IH+P L + WP
Sbjct: 1413 CGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSWP 1472
Query: 1845 FSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVAKFIKNNIICRYG 1904
F++WG+DM+G + KA G+ + VAID F+KW+EA +T F NI+ R+G
Sbjct: 1473 FAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNARDFF-INIVHRFG 1530
Query: 1905 VPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANKNI-----KRIVQ 1959
VP++IITDNG V + CE+F I+ +S P NG VE AN I R+
Sbjct: 1531 VPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFD 1590
Query: 1960 KMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVEIPSLRVIMEAKL 2019
++ W + LP L RTT +TG +PF LVYG EA+LP EVE SLR
Sbjct: 1591 RLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVEFESLRF---RNF 1647
Query: 2020 SEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFKVGELVLKRKISQ 2079
E + + R D L+ +EE R A+ + Y ++ ++ V R F VG+LVL RKI
Sbjct: 1648 REERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFLVGDLVL-RKIQT 1706
Query: 2080 QPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKKYF 2129
D R K +P +EGP+++ + G+ L DG + N N + +++++
Sbjct: 1707 TRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDNSWNIEHLRRFY 1755
>ref|XP_474845.1| OSJNBa0035O13.3 [Oryza sativa (japonica cultivar-group)]
gi|21741410|emb|CAD40114.1| OSJNBa0035O13.3 [Oryza sativa
(japonica cultivar-group)]
Length = 2008
Score = 684 bits (1766), Expect = 0.0
Identities = 399/1091 (36%), Positives = 588/1091 (53%), Gaps = 68/1091 (6%)
Query: 1051 VIQLLREYPDIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQ 1110
+I L+ DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+
Sbjct: 973 LITFLQNNKDIFAWKPSDMPGIPREVIEHSLHVKEDAKPIKQRLRRFAQDRKDAIKEELT 1032
Query: 1111 KQIDAGFLMTVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNT 1170
K + AGF+ V +P+W+AN V V KK G+ RMCVD+ DLNK+ PKD F LP ID +VD+T
Sbjct: 1033 KLLAAGFIKEVLHPDWLANPVLVRKKTGQWRMCVDYTDLNKSCPKDPFGLPRIDQVVDST 1092
Query: 1171 AQSKVFSFMDGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTL 1230
A ++ SF+D +SGY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR +
Sbjct: 1093 AGCELLSFLDCYSGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRC 1152
Query: 1231 FHDMIHKEVEVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLG 1290
F I + VE YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLG
Sbjct: 1153 FSTQIGRNVEAYVDDVVVKTKQKDDLISDLEETFVSIRAFRMKLNPEKCTFGVPSGKLLG 1212
Query: 1291 FIVSQKGIEVDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRK 1350
F+VS +GI+ +P+KV AI M P T+K V+ G + +SRF+S + P FKLL+K
Sbjct: 1213 FMVSHRGIQANPEKVTAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKK 1272
Query: 1351 NQPVVWNDECQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVLG-QQDETG- 1408
W E Q+AF+ K L EPP+L P PL++Y++ + + VL +++E G
Sbjct: 1273 TDNFQWGPEAQKAFEDFKKLLTEPPVLASPHPQEPLLLYVSATSQVVSTVLAVEREEEGH 1332
Query: 1409 --KKEHAIYYLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYI 1466
K + IY++S+ D +TRY ++K L H+ +++ P+ I
Sbjct: 1333 VQKVQRPIYFVSEVLADSKTRYPQVQK--------------LLYGHSVTVVTSF-PLGDI 1377
Query: 1467 FEKAAVTGKIARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIM 1526
G+IA+W + L DI FK + +IK LAD +A ++ + D P E +
Sbjct: 1378 LHNREANGRIAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAENME 1432
Query: 1527 YLKSKDCEEPLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECT 1586
+ W + FDG+ G G G V++SP G + + I F +
Sbjct: 1433 H--------------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSAS 1472
Query: 1587 NNMAEYEACIFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLT 1646
+N+AEYEA + G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L
Sbjct: 1473 HNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLED 1532
Query: 1647 YFTKVELHHIPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQA 1706
F +EL H+ R N+ AD LA S V + + V+ L P+ +
Sbjct: 1533 KFDGLELSHVLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQVAGT 1588
Query: 1707 GENVIDYRPWYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMV 1763
+ + W + +FL S+E P QDK R++ R +++ LYK++ +
Sbjct: 1589 HDVAVVETDWREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGI 1643
Query: 1764 LLRCVDEHEAEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQ 1823
L RCV E QL+ D+H G G HA T+ K R G++W D + R C CQ
Sbjct: 1644 LQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQ 1703
Query: 1824 IYADKIHVPPHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASY 1883
+A +IH+P L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA
Sbjct: 1704 FFARQIHLPAQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPV 1762
Query: 1884 TNVTKQVVAKFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQM 1943
+T F NI+ R+GVP++IITDNGT V + CE+F I+ +S P
Sbjct: 1763 VTITADNARDFF-INIVHRFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMS 1821
Query: 1944 NGAVEAANKNI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGM 1998
NG VE AN I R+ ++ W + LP L RTT +TG +PF LVYG
Sbjct: 1822 NGQVERANGMILQGIKARVFDRLKPYAGKWVQQLPSVLWSLRTTPSRATGQSPFFLVYGA 1881
Query: 1999 EAVLPLEVEIPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFD 2058
EA+LP EVE SLR E + + R D L+ +EE R A+ R Y ++ +
Sbjct: 1882 EAMLPSEVEFESLRF---RNFREERYEEDRVDDLHRLEEAREAALIRSARYLQGLRRYHN 1938
Query: 2059 KKVHPREFKVGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPN 2118
+ V R F VG+LVL RKI D R K +P +EGP+++ + G+ L DG + N
Sbjct: 1939 RNVRSRAFLVGDLVL-RKIQTTRD-RHKLSPLWEGPFIISEVTRPGSYRLKREDGTLVDN 1996
Query: 2119 PVNADIVKKYF 2129
N + +++++
Sbjct: 1997 SWNIEHLRRFY 2007
>gb|AAP54912.1| gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536646|ref|NP_922625.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
gi|13876521|gb|AAK43497.1| gag-pol precursor [Oryza
sativa (japonica cultivar-group)]
Length = 2017
Score = 682 bits (1761), Expect = 0.0
Identities = 394/1082 (36%), Positives = 586/1082 (53%), Gaps = 54/1082 (4%)
Query: 1060 DIFAWSYEDMPGLDPMIVEHRIPTKPECPPVRQKLRRTHPDMALKIKNEVQKQIDAGFLM 1119
DIFAW DMPG+ ++EH + K + P++Q+LRR D IK E+ K + AGF+
Sbjct: 977 DIFAWKPSDMPGIPREVIEHSLYVKEDAKPIKQRLRRFAQDRKDAIKEELTKLLAAGFIK 1036
Query: 1120 TVEYPEWVANIVPVPKKDGKVRMCVDFRDLNKASPKDNFPLPHIDVLVDNTAQSKVFSFM 1179
V +P+W+AN V V KK G+ RMCVD+ DLN + PKD F LP ID +VD+TA ++ SF+
Sbjct: 1037 EVLHPDWLANPVLVRKKTGQWRMCVDYTDLNISCPKDPFGLPRIDQVVDSTAGCELLSFL 1096
Query: 1180 DGFSGYNQIKMSPEDREKTSFITPWGTFCYKVMPFGLINAGATYQRGMTTLFHDMIHKEV 1239
D + GY+QI++ D KTSFITP+G +CY MPFGL NAGATYQR + F I + V
Sbjct: 1097 DCYLGYHQIRLKESDCLKTSFITPFGAYCYVTMPFGLKNAGATYQRMIQRCFSTQIGRNV 1156
Query: 1240 EVYVDDMIVKSTDEEQHVEYLTKMFERLRKYKLRLNPNKCTFGVRSGKLLGFIVSQKGIE 1299
E YVDD++VK+ ++ + L + F +R ++++LNP KCTFGV SGKLLGF+VS +GI+
Sbjct: 1157 EAYVDDVVVKTKQKDDLISDLEETFASIRAFRMKLNPEKCTFGVPSGKLLGFMVSHRGIQ 1216
Query: 1300 VDPDKVRAIREMPAPQTEKQVRGFLGRLNYISRFISHMTATCGPIFKLLRKNQPVVWNDE 1359
+P+K+ AI M P T+K V+ G + +SRF+S + P FKLL+K W +
Sbjct: 1217 ANPEKITAILNMKPPSTQKDVQKLTGCMAALSRFVSRLGERGMPFFKLLKKTDDFQWGPD 1276
Query: 1360 CQEAFDSIKNYLLEPPILVPPVEGRPLIMYLAVFDESMGCVL-GQQDETG---KKEHAIY 1415
Q+AF+ K L EPP+L P PL++Y+A + + VL +++E G K + IY
Sbjct: 1277 AQKAFEDFKKLLTEPPVLASPHPQEPLLLYIAAASQVVSTVLVVEREEEGHVQKVQRPIY 1336
Query: 1416 YLSKKFTDCETRYTMLEKTCCALAWAAKRLRHYLVNHTTWLISRMDPIKYIFEKAAVTGK 1475
++S+ D +TRY ++K + ++L HY +H+ +++ + I G+
Sbjct: 1337 FVSEVLADSKTRYPQVQKLLYGILITTRKLSHYFQSHSVTVVTSFS-LGDILHNREANGR 1395
Query: 1476 IARWQMLLSEYDIVFKTQKAIKGSILADHLAYQPLDDYQPIEFDFPDEEIMYLKSKDCEE 1535
IA+W + L DI FK + +IK LAD +A ++ + D P E++ +
Sbjct: 1396 IAKWALELMSLDISFKPRISIKSQALADFVA-----EWTECQEDTPAEKMEH-------- 1442
Query: 1536 PLINEGPDPNSKWGLVFDGAVNAYGKGIGAVIVSPQGHHIPFTARILFECTNNMAEYEAC 1595
W + FDG+ G G G V++SP G + + I F ++N+AEYEA
Sbjct: 1443 ------------WTMHFDGSKRLSGTGAGVVLISPTGERLSYVLWIHFSASHNVAEYEAL 1490
Query: 1596 IFGIEEAIDMRIKHLDIYGDSALVINQIKGEWETHHANLIPYRDYARRLLTYFTKVELHH 1655
+ G+ AI + IK L + GDS LV+NQ+ EW N++ YR R+L F +EL H
Sbjct: 1491 LHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSH 1550
Query: 1656 IPRDENQMADALATLSSMFRVNHWNDVPIIRVQRLERPSHVFAIGDVIDQAGENVIDYRP 1715
+ R N+ AD LA S V + + V+ L P+ I + +
Sbjct: 1551 VLRHNNEAADRLANFGSKREVAPSD----VFVEHLYTPTVPHKDTTQIAGTHDVALVEAD 1606
Query: 1716 WYYDIKQFLLSREYPPGASKQDKKTLRRLAGR---FLLDGDILYKRNYDMVLLRCVDEHE 1772
W + +FL S+E P QDK R++ R +++ LYK++ +L RCV E
Sbjct: 1607 WREPLIRFLTSQELP-----QDKDEAERISRRSKLYVMHEAELYKKSPSGILQRCVSLEE 1661
Query: 1773 AEQLMHDVHDGTFGTHATGHTMSRKLLRAGYYWMAMEHDCYQYARKCHKCQIYADKIHVP 1832
QL+ D+H G G HA T+ K R G++W D + R C CQ +A +IH+P
Sbjct: 1662 GRQLLKDIHSGICGNHAAARTIVGKAYRQGFFWPTAVSDADKIVRTCEGCQFFARQIHLP 1721
Query: 1833 PHALNVMSSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTKWVEAASYTNVTKQVVA 1892
L + WPF++WG+DM+G + KA G+ + VAID F+KW+EA +T
Sbjct: 1722 AQELQTIPLSWPFAVWGLDMVGPFK-KAVGGYTHLFVAIDKFSKWIEAKPVVTITADNAR 1780
Query: 1893 KFIKNNIICRYGVPSKIITDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEAANK 1952
F NI+ R+GVP++IITDNG V + CE+F I+ +S P NG VE AN
Sbjct: 1781 DFF-INIVHRFGVPNRIITDNGRQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANG 1839
Query: 1953 NI-----KRIVQKMVTTYKDWHEMLPYALHGYRTTVRSSTGATPFSLVYGMEAVLPLEVE 2007
I R+ ++ W + LP L RTT +TG +PF LVYG EA+LP EVE
Sbjct: 1840 MILQGIKARVFDRLKPYAGKWVKQLPSVLWSLRTTPSRATGQSPFFLVYGAEAMLPSEVE 1899
Query: 2008 IPSLRVIMEAKLSEAEWCQSRYDQLNLIEEKRMDAMARGQSYQARMKTAFDKKVHPREFK 2067
SLR E + + R D L+ +EE R A+ + Y ++ ++ V R F
Sbjct: 1900 FESLRF---RNYREERYEEDRVDDLHRLEEVREAALIQSARYLQGLRRYHNRNVRSRAFL 1956
Query: 2068 VGELVLKRKISQQPDPRGKWTPNYEGPYVVKKAFSGGALILTHMDGVELPNPVNADIVKK 2127
VG+LVL RKI D R K +P +EGP+++ G+ L DG + N N + +++
Sbjct: 1957 VGDLVL-RKIQTTRD-RHKLSPLWEGPFIISDVTRPGSYRLKREDGTLVDNSWNIEHLRR 2014
Query: 2128 YF 2129
++
Sbjct: 2015 FY 2016
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.340 0.149 0.494
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,356,288,281
Number of Sequences: 2540612
Number of extensions: 138519922
Number of successful extensions: 507308
Number of sequences better than 10.0: 35554
Number of HSP's better than 10.0 without gapping: 4730
Number of HSP's successfully gapped in prelim test: 30824
Number of HSP's that attempted gapping in prelim test: 485033
Number of HSP's gapped (non-prelim): 43917
length of query: 2129
length of database: 863,360,394
effective HSP length: 144
effective length of query: 1985
effective length of database: 497,512,266
effective search space: 987561848010
effective search space used: 987561848010
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.9 bits)
S2: 83 (36.6 bits)
Medicago: description of AC139745.5