BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138580.5 + phase: 0 /pseudo
(448 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultiva... 127 5e-28
ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis ... 112 2e-23
emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar... 111 4e-23
gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cul... 107 8e-22
gb|AAF18538.1| Very similar to retrotransposon reverse transcrip... 103 8e-21
ref|XP_475426.1| putative non-LTR retroelement reverse transcrip... 103 1e-20
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 99 2e-19
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 97 8e-19
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 97 8e-19
gb|AAU89733.1| hypothetical protein [Solanum tuberosum] 97 1e-18
ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica... 96 2e-18
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 96 3e-18
gb|AAX94970.1| retrotransposon protein, putative, unclassified [... 96 3e-18
pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana gi... 95 4e-18
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 95 4e-18
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 94 9e-18
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 94 9e-18
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 94 9e-18
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 94 9e-18
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 94 9e-18
>emb|CAE03883.2| OSJNBb0015N08.11 [Oryza sativa (japonica cultivar-group)]
gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza
sativa (japonica cultivar-group)]
gi|50928543|ref|XP_473799.1| OSJNBb0015N08.11 [Oryza
sativa (japonica cultivar-group)]
Length = 1026
Score = 127 bits (320), Expect = 5e-28
Identities = 76/227 (33%), Positives = 121/227 (52%), Gaps = 22/227 (9%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILL S L+++P+Y +SF++ P G+ I +F W E + RK + W + ++
Sbjct: 597 ILLNSTLSSVPMYMISFYRLPKGVQERIDYFRKRFLWQEDQGIRKYHLVNWPLVCSPRDQ 656
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLGV L N A+LGKW WR L + E W++++ A+Y +D L L+ G S
Sbjct: 657 GGLGVLDLEAMNKAMLGKWIWR-LENEEGWWQEIIYAKY-CSDKPLSGLRLKAGS---SH 711
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ ++ ++D +F C + VG+G K FW D W G PL +F LY + +
Sbjct: 712 FWQGVMEVKD-------DFFSFCT-KIVGNGEKTLFWEDSWLGGKPLAIQFPSLYGIVIT 763
Query: 372 KSITVRNMFLLGV-------DVGGEALR-WRRRLWAWEE-ELVEECR 409
K IT+ ++ G+ D+ G+ LR WR+ + +WE LVE C+
Sbjct: 764 KRITIADLNRKGIDCMKFRRDLHGDKLRDWRKIVNSWEGLNLVENCK 810
>ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana]
Length = 633
Score = 112 bits (280), Expect = 2e-23
Identities = 63/168 (37%), Positives = 87/168 (51%), Gaps = 9/168 (5%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL +LPV+ ++ P + + L F WG +KRK+ I WD + L K G
Sbjct: 40 LTKAVLASLPVHTMTTIVLPKSTLDKLDQLSRSFLWGSTPEKRKLHLIAWDRVCLPKAEG 99
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ R N+ALL K WRL+ DR +LW +VL ++Y + GGL D + R+ SS
Sbjct: 100 GLGIRSARPMNLALLSKVGWRLMKDRTSLWARVLRSKYRI--GGLRDTTWINTKRNASST 157
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
WR I + G W VGDG I FW D+W + P+ D
Sbjct: 158 WRSIKSGLREVVIPGMNWV-------VGDGKDICFWDDKWLVEDPIRD 198
>emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa (japonica cultivar-group)]
Length = 633
Score = 111 bits (278), Expect = 4e-23
Identities = 67/225 (29%), Positives = 115/225 (50%), Gaps = 17/225 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I + + L+++P YA+ F+ P G+ S+ +++W + K ++W+ ++ K++
Sbjct: 313 IQINACLSSIPSYAMGFYSLPEGVHHKFDSVRGRYYWAGNKINGKYHMVKWEDMAFPKDF 372
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG T R N+ALL KW ++L ++L +L +Y + +GG+ E+G S
Sbjct: 373 GGLGFTETRAMNIALLAKWIFKLESPDQSLCTSLLRNKY-LQEGGVFQCRAEEG----SQ 427
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ ++ RD + G E W VGDG I FW+D W PL F L+++
Sbjct: 428 FWKGVLSTRDWVKLGTE-WL-------VGDGRHILFWKDVWVHPCPLKTSFPLLFEICNQ 479
Query: 372 KSITVRNMFLLGVDVGGEALRWRRRLWAWEEELVEECRVVLLTVS 416
+SI V + G+ E L +RR E + EE RV++ +S
Sbjct: 480 QSILVAEIKQAGI----EGLSFRRSFGPREMDEWEELRVIIENIS 520
>gb|AAP52238.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531298|ref|NP_919951.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|22655797|gb|AAN04214.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 764
Score = 107 bits (267), Expect = 8e-22
Identities = 61/192 (31%), Positives = 98/192 (50%), Gaps = 12/192 (6%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
IL+ S L+++P+Y + + P G+ + + S+ +FFW E KRK I+W+ L KE+
Sbjct: 328 ILINSCLSSIPLYMMGVYLLPEGVHNKMDSIRARFFWEGLEKKRKYHMIKWEALCRPKEF 387
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG R+ N+ALL KW +RL +E +L +Y + DGG G + S
Sbjct: 388 GGLGFIDTRKMNIALLCKWIYRLESGKEDPCCVLLRNKY-MKDGG---GFFQSKAEESSQ 443
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ + ++ W +VG+G +FW D W G+ PL ++ +Y + +
Sbjct: 444 FWKGLHEVKK--------WMDLGSSYKVGNGKATNFWSDVWIGETPLKTQYPNIYRMCAD 495
Query: 372 KSITVRNMFLLG 383
K TV M L G
Sbjct: 496 KEKTVSQMCLEG 507
>gb|AAF18538.1| Very similar to retrotransposon reverse transcriptase [Arabidopsis
thaliana] gi|25518314|pir||A86359 hypothetical protein
F12K8.9 - Arabidopsis thaliana
Length = 1231
Score = 103 bits (258), Expect = 8e-21
Identities = 63/176 (35%), Positives = 93/176 (52%), Gaps = 14/176 (7%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W +KS+ I+LK+V A+PV+A+S FK P +++ S + F+W + +RKI
Sbjct: 627 WFSKSLSQGGKEIMLKAVAMAMPVFAMSCFKLPKTTCTNLASAMADFWWSANDHQRKIHW 686
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W+ L L KE+GGLG + FN ALL K WRLL + L+ +++ +RY L+
Sbjct: 687 LSWEKLCLPKEHGGLGFRDIGLFNQALLAKQAWRLLQFPDCLFARLIKSRYFPVGEFLD- 745
Query: 300 GDLEDGGRSCSSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D G S WR I+ RD +C G + +RVG+G I W D W D
Sbjct: 746 ---SDVGSRPSFGWRSILHGRDLLCRG--------LVKRVGNGKSIRVWIDYWLDD 790
>ref|XP_475426.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|46576009|gb|AAT01370.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
Length = 1614
Score = 103 bits (257), Expect = 1e-20
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 13/185 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+ + + L+++P YA+ F++ P G+ S+ +++W K K ++W+ L+ K+Y
Sbjct: 1416 VQINTCLSSIPSYAMCFYQLPEGVHQKFGSIRGRYYWARNRLKGKYHMVKWEDLAFPKDY 1475
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG T R N ALL KW ++ + ++L ++L +Y + DGG + R S
Sbjct: 1476 GGLGFTETRRMNTALLAKWIMKIESEDDSLCIELLRRKY-LQDGGF----FQCKERYASQ 1530
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W+ ++ IR + G W +VGDG+ I FWRD W G PL F ++ +
Sbjct: 1531 FWKGLLNIRRWLSLGSV-W-------QVGDGSHISFWRDVWWGQCPLRTLFPAIFAVCNQ 1582
Query: 372 KSITV 376
+ I V
Sbjct: 1583 QDILV 1587
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana] gi|25411313|pir||C84487 hypothetical protein
At2g07650 [imported] - Arabidopsis thaliana
Length = 732
Score = 99.4 bits (246), Expect = 2e-19
Identities = 52/168 (30%), Positives = 82/168 (47%), Gaps = 9/168 (5%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + + + F WG +RK I W + + G
Sbjct: 317 LTKAVLSSIPVHTMSTIALPKSTLDGLDKVSRSFLWGSSVTQRKQHLISWKRVCKPRSEG 376
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ + ++ N ALL K WRL+ D +LW +++ Y V D + DG CSS
Sbjct: 377 GLGIRKAQDMNKALLSKVGWRLIQDYHSLWARIMRCNYRVQD--VRDGAWTKVRSVCSST 434
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
WR + + G W +GDG +I FW D+W ++PL +
Sbjct: 435 WRSVALGMREVVIPGLSWV-------IGDGREILFWMDKWLTNIPLAE 475
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 97.4 bits (241), Expect = 8e-19
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 18/178 (10%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W AK++ +LLKS+ ALPVY +S FK P + + +++ F+W + KRKI
Sbjct: 757 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHW 816
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W L+L K+ GG G L+ FN ALL K WR+L ++ +L+ +V +RY +
Sbjct: 817 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY------FSN 870
Query: 300 GDLEDGGRSC--SSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D R S WR I+ R+ + +G +R +G+G K W D+W D
Sbjct: 871 SDFLSATRGSRPSYAWRSILFGRELLMQG--------LRTVIGNGQKTFVWTDKWLHD 920
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 97.4 bits (241), Expect = 8e-19
Identities = 59/178 (33%), Positives = 91/178 (50%), Gaps = 18/178 (10%)
Query: 182 WLAKSVPFF--RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS* 239
W AK++ +LLKS+ ALPVY +S FK P + + +++ F+W + KRKI
Sbjct: 778 WYAKTLSQGGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWWNSMQQKRKIHW 837
Query: 240 IRWDTLSLRKEYGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLED 299
+ W L+L K+ GG G L+ FN ALL K WR+L ++ +L+ +V +RY +
Sbjct: 838 LSWQRLTLPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRY------FSN 891
Query: 300 GDLEDGGRSC--SSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
D R S WR I+ R+ + +G +R +G+G K W D+W D
Sbjct: 892 SDFLSATRGSRPSYAWRSILFGRELLMQG--------LRTVIGNGQKTFVWTDKWLHD 941
>gb|AAU89733.1| hypothetical protein [Solanum tuberosum]
Length = 327
Score = 97.1 bits (240), Expect = 1e-18
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 15/229 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L+ SVL ++P Y +S P+ + + + F W KI ++W ++L K+YG
Sbjct: 77 LINSVLDSIPTYFMSLLLMPAKVKQRLDKIRRDFLWEGNNKDHKIHLVKWAKVTLPKQYG 136
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSSW 312
GLG+ L N LL KW WR + LW++V+ A+YG + G +
Sbjct: 137 GLGIKDLALHNKCLLLKWHWRYNQEAAGLWKEVIQAKYGSDSHWCSNKVSTSYG---TGV 193
Query: 313 WREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVNK 372
WR+I ++ E +FG VG+G I FW+D W GD PL + F ++ +A +
Sbjct: 194 WRDIRKL-------WEIFFGD-ASLMVGNGEHIQFWKDIWLGDTPLMNVFPSIFLIASHP 245
Query: 373 SITVRNMFLLGVDVGGEALRWRRRLWAWEEELVEECRVVLLTVSLKSDK 421
T+ V L RR L WE E V + T ++ S +
Sbjct: 246 DSTISQYREDNV----WNLILRRNLNDWELEEVFSLMATIQTSAINSQR 290
>ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 486
Score = 96.3 bits (238), Expect = 2e-18
Identities = 57/185 (30%), Positives = 95/185 (50%), Gaps = 13/185 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LL SVL++LP++ L FF+ P G++ + + FFW K+K +WD + K+
Sbjct: 92 VLLNSVLSSLPMFMLLFFEIPRGVLQRLDYYRSSFFWSSDSQKKKYRLTKWDYIYRLKDQ 151
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLGV L N LL KW ++ LL+ E LW+ +L +Y + L + G S
Sbjct: 152 GGLGVLNLDIMNRCLLSKWLFK-LLNGEGLWQNLLRNKY-LKGKPLSHMSHKPG---TSQ 206
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
+W +++++D + G + G+G +I FW D W G PL ++ LY++
Sbjct: 207 FWAGLMKVKDQFFQYGS--------FKPGNGMEIRFWEDTWLGLQPLKYQYPSLYNVVRK 258
Query: 372 KSITV 376
+ T+
Sbjct: 259 RHSTL 263
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408124|pir||C84716 hypothetical protein
At2g31080 [imported] - Arabidopsis thaliana
Length = 1231
Score = 95.5 bits (236), Expect = 3e-18
Identities = 57/169 (33%), Positives = 88/169 (51%), Gaps = 11/169 (6%)
Query: 193 LLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEYG 252
L K+VL+++PV+ +S P + ++ F WG +K+K + W + K G
Sbjct: 655 LTKAVLSSIPVHVMSAILLPVSTLDTLDRYSRTFLWGSTMEKKKQHLLSWRKICKPKAEG 714
Query: 253 GLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGD-LEDGGRSCSS 311
G+G+ R+ N AL+ K WRLL D+E+LW +V+ +Y V GG++D L+ R S+
Sbjct: 715 GIGLRSARDMNKALVAKVGWRLLQDKESLWARVVRKKYKV--GGVQDTSWLKPQPRWSST 772
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCD 360
W V +R+ + + G GW GDG I FW DRW PL +
Sbjct: 773 WRSVAVGLREVVVK-GVGWV-------PGDGCTIRFWLDRWLLQEPLVE 813
>gb|AAX94970.1| retrotransposon protein, putative, unclassified [Oryza sativa
(japonica cultivar-group)]
Length = 816
Score = 95.5 bits (236), Expect = 3e-18
Identities = 58/163 (35%), Positives = 82/163 (49%), Gaps = 16/163 (9%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+L+KSV+ ALP Y ++ FK PSG ++ KF+WGE +++RK W L K
Sbjct: 61 VLIKSVIQALPTYVMNVFKLPSGFCEDYMKMIRKFWWGEEKNRRKTHWTSWQQLIKPKSK 120
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDG--GRSC 309
GG+G L+ FN ALL + WRL+ ++L K++ ARY +G L D
Sbjct: 121 GGIGFKDLKIFNQALLARQAWRLIQFLDSLCAKLMKARY------FPNGHLIDTVFPTDS 174
Query: 310 SSWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
S WR GIC G E + R+G G ++ WRD W
Sbjct: 175 SEVWR-------GICHGLE-LLKKGIIWRIGKGDQLHIWRDNW 209
>pir||G86379 protein F5A9.24 [imported] - Arabidopsis thaliana
gi|9945082|gb|AAG03119.1| F5A9.24 [Arabidopsis thaliana]
Length = 1254
Score = 95.1 bits (235), Expect = 4e-18
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLKSV A+PV+A+S FK P +++S + F+W + RKI W+ L L K+
Sbjct: 757 VLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDS 816
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG ++ FN ALL K WRLL + L ++L +RY A L D L + S
Sbjct: 817 GGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL-DAAL---SQRPSF 872
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + +G +++RVGDGA + W D W D
Sbjct: 873 GWRSILFGRELLSKG--------LQKRVGDGASLFVWIDPWIDD 908
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 95.1 bits (235), Expect = 4e-18
Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 12/164 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+LLKSV A+PV+A+S FK P +++S + F+W + RKI W+ L L K+
Sbjct: 754 VLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDS 813
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG ++ FN ALL K WRLL + L ++L +RY A L D L + S
Sbjct: 814 GGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFL-DAAL---SQRPSF 869
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGD 355
WR I+ R+ + +G +++RVGDGA + W D W D
Sbjct: 870 GWRSILFGRELLSKG--------LQKRVGDGASLFVWIDPWIDD 905
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 94.0 bits (232), Expect = 9e-18
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 1173 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1232
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1233 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1288
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1289 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1336
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1337 KEMTINNLF 1345
>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411151|pir||H84465 hypothetical protein
At2g05200 [imported] - Arabidopsis thaliana
Length = 1229
Score = 94.0 bits (232), Expect = 9e-18
Identities = 55/162 (33%), Positives = 85/162 (51%), Gaps = 12/162 (7%)
Query: 191 RILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKE 250
+++LK+VL ++P+Y++S FK PS + I+SLL +F+W D RK S + W L+ K
Sbjct: 685 QVMLKAVLASMPLYSMSCFKLPSALCRKIQSLLTRFWWDTKPDVRKTSWVAWSKLTNPKN 744
Query: 251 YGGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCS 310
GGLG + N +LL K WRLL E+L ++L+ +Y + +E S
Sbjct: 745 AGGLGFRDIERCNDSLLAKLGWRLLNSPESLLSRILLGKYCHSSSFMEC----KLPSQPS 800
Query: 311 SWWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR I+ R+ I + G GW + +G K+ W D W
Sbjct: 801 HGWRSIIAGRE-ILKEGLGWL-------ITNGEKVSIWNDPW 834
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 94.0 bits (232), Expect = 9e-18
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
I+LKSV A+PVYA+S FK P GI+S I+SLL F+W + ++R I + W L K+
Sbjct: 947 IMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQRGIPWVAWKRLQYSKKE 1006
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG L +FN ALL K WRL+ +L+ +V+ ARY D + D + + S
Sbjct: 1007 GGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARY-FKDVSILDAKVR---KQQSY 1062
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRWCGDVPLCDRFSRLYDLAVN 371
W ++ DGI +G R +GDG I D P L
Sbjct: 1063 GWASLL---DGIALLKKG-----TRHLIGDGQNIRIGLDNIVDSHPP----RPLNTEETY 1110
Query: 372 KSITVRNMF 380
K +T+ N+F
Sbjct: 1111 KEMTINNLF 1119
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 94.0 bits (232), Expect = 9e-18
Identities = 55/161 (34%), Positives = 78/161 (48%), Gaps = 12/161 (7%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
+++KSV LP Y +S F+ P I S + S + KF+W D R + + WD L K
Sbjct: 575 VMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNGDSRGMHWMAWDKLCSSKSD 634
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARYGVADGGLEDGDLEDGGRSCSS 311
GGLG + +FN ALL K WRL+ ++L+ KV RY L+ S S
Sbjct: 635 GGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLD----SIKSYSPSY 690
Query: 312 WWREIVRIRDGICEGGEGWFGACVRRRVGDGAKIDFWRDRW 352
WR ++ R + +G + +RVG GA I W D W
Sbjct: 691 GWRSMISARSLVYKG--------LIKRVGSGASISVWNDPW 723
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 94.0 bits (232), Expect = 9e-18
Identities = 48/99 (48%), Positives = 64/99 (64%)
Query: 192 ILLKSVLTALPVYALSFFKAPSGIISSIKSLLNKFFWGEGEDKRKIS*IRWDTLSLRKEY 251
ILLKSV A+PVYA+S FK P GI+S I+SLL F+W + +KR I + W L K+
Sbjct: 412 ILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWWEKASNKRGIPWVAWKRLQYSKKE 471
Query: 252 GGLGVTRLREFNVALLGKWCWRLLLDREALWRKVLVARY 290
GGLG L +FN ALL K WR++ +L+ +V+ ARY
Sbjct: 472 GGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARY 510
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.353 0.160 0.608
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 693,760,033
Number of Sequences: 2540612
Number of extensions: 27949561
Number of successful extensions: 114120
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 113690
Number of HSP's gapped (non-prelim): 309
length of query: 448
length of database: 863,360,394
effective HSP length: 131
effective length of query: 317
effective length of database: 530,540,222
effective search space: 168181250374
effective search space used: 168181250374
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.5 bits)
S2: 77 (34.3 bits)
Medicago: description of AC138580.5