BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138579.1 - phase: 0
(881 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultiva... 532 e-149
gb|AAP54617.1| putative non-LTR retroelement reverse transcripta... 531 e-149
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta... 525 e-147
gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Ara... 516 e-145
ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-gr... 516 e-144
gb|AAD21778.1| putative non-LTR retroelement reverse transcripta... 512 e-143
gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (jap... 511 e-143
emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357... 501 e-140
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta... 501 e-140
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta... 499 e-139
gb|AAD03565.2| putative non-LTR retroelement reverse transcripta... 493 e-137
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi... 493 e-137
gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (jap... 470 e-130
gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana] 461 e-128
gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cult... 460 e-128
emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultiva... 460 e-127
gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cul... 459 e-127
gb|AAD24601.1| putative non-LTR retroelement reverse transcripta... 455 e-126
pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana g... 455 e-126
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta... 448 e-124
>gb|AAQ19327.1| bZIP-like protein [Oryza sativa (japonica cultivar-group)]
Length = 2367
Score = 532 bits (1371), Expect = e-149
Identities = 308/855 (36%), Positives = 444/855 (51%), Gaps = 43/855 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK + V ++D+RPI+LCNVVYK+ +K L NRL+ +LD +S QS FV GR I
Sbjct: 1221 TAIVLIPKKEQPVDLRDFRPISLCNVVYKVVSKCLVNRLRPILDDLVSVEQSAFVQGRMI 1280
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H + K A+KLD+SKAYDR+DW +L+ M K+GF+ +WV WI
Sbjct: 1281 TDNALLAFECFHAMQKNKKANHAACAYKLDLSKAYDRVDWRFLEMAMNKLGFARRWVNWI 1340
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V Y V N + RGLRQGDPL +LF+ A+GLS L+++ A ++
Sbjct: 1341 MKCVTSVRYMVKFNGTLLQSFAPTRGLRQGDPLLPFLFLFVADGLSLLLKEKVAQNSLTP 1400
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
K+C AP +SHLLFADD LFF+A EA V+K +L +GQ IN K I
Sbjct: 1401 FKVCRAAPGISHLLFADDTLLFFKAHQREAEVVKEVLSSYAMGTGQLINPAKCSILMGGA 1460
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I ILQV+ +YLG P+ GR K F ++ +IWK++ W LS
Sbjct: 1461 STPAVSEAISEILQVERDRFEDRYLGFPTPEGRMHKGRFQSLQAKIWKRVIQWGENHLST 1520
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+K+++Q+IP Y M IF LP S+ D++ K+ +FWW Q R HW +WD L
Sbjct: 1521 GGKEVLIKAVIQAIPVYVMGIFKLPESVIDDLTKLTKNFWWDSMNGQ-RKTHWKAWDSLT 1579
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG+ F+ +FN A+L +Q WR +T PD+L AR+ KA+YFP + +S G N S
Sbjct: 1580 KPKSLGGLGFRDYRLFNQALLARQAWRLITYPDSLCARVLKAKYFPHGSLIDTSFGSNSS 1639
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
WRS+ +LK G WR+G+G++I IW + W+ D + P T G + VS +
Sbjct: 1640 PAWRSIEYGLDLLKKGIIWRVGNGNSIRIWRDSWLPRDHSRRPIT-GKANCRLKWVSD-L 1697
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
+ WDVP + F I+ + + +ED W+ + NG +SVRSAYRL Q
Sbjct: 1698 ITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRLAAQ- 1756
Query: 542 LLDISEFKVLG------AWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
L++I E G AW+ IW KVP KVK WRVA N L T + +++ + C
Sbjct: 1757 LVNIEESSSSGTNNINKAWEMIWKCKVPQKVKIFAWRVASNCLATMVNKKKRKLEQSDMC 1816
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESA 655
+C+ +ED H C +S +W+ + S V + + + +F L+ + E A
Sbjct: 1817 QICDRENEDDAHALCRCIQASQLWSCMHKSGSVSVDIKASVLGRFWLFDCLEKIPEYEQA 1876
Query: 656 LFATILWSIWKQRNNKIWN---DVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGE 712
+F LW W RN I T+ ++ LL+ A A L G+
Sbjct: 1877 MFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIRQAPQADLVK------GK 1930
Query: 713 HSQSTRVIK--------------WSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAF 758
H T +K W +P G MK N+D SF + + G+G+ +R+ G
Sbjct: 1931 HVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGLGMILRNSAGDI 1990
Query: 759 VIARTKCLTPKCDVHIGEAL-----GLLTALQWVHELQLGPIEFELDSKKVVDSFGANRH 813
+ K L +C+ + L GL A+ W L PI+ E D VV
Sbjct: 1991 IFTSCKPL-ERCNNPLESELRACVEGLKLAIHWT----LLPIQVETDCASVVQLLQGIGR 2045
Query: 814 DSTEFGAIINDCKTL 828
D + II++ + L
Sbjct: 2046 DFSVLANIIHEARHL 2060
>gb|AAP54617.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa
(japonica cultivar-group)] gi|37536056|ref|NP_922330.1|
putative non-LTR retroelement reverse transcriptase
[Oryza sativa (japonica cultivar-group)]
gi|10140689|gb|AAG13524.1| putative non-LTR retroelement
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1382
Score = 531 bits (1369), Expect = e-149
Identities = 310/890 (34%), Positives = 467/890 (51%), Gaps = 26/890 (2%)
Query: 4 IALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSILD 63
+ LIPK + + +RPI+LCNV+YKIA+KVLANRLK L +S+ QS FVPGR I D
Sbjct: 505 VVLIPKVNNASHLSKFRPISLCNVLYKIASKVLANRLKPFLPDIVSEFQSAFVPGRLITD 564
Query: 64 NAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWIMM 123
+A+ A E +H + K A K+D+ KAYDR++W YL + K+GFS W+ +M
Sbjct: 565 SALVAYECLHTIR-KQHNKNPFFALKIDMMKAYDRVEWAYLSGCLSKLGFSQDWINTVMR 623
Query: 124 CVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHGVK 183
CV +V Y+V +N E+ P++ RG+RQGDP+S YLF++C EGLS L+ K E +G + G+K
Sbjct: 624 CVSSVRYAVKINGELTKPVVPSRGIRQGDPISPYLFLLCTEGLSCLLHKKEVAGELQGIK 683
Query: 184 ICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRNGS 243
+ P +SHLLFADD F +A+ +KN L SASGQ IN KS IFF +
Sbjct: 684 NGRHGPPISHLLFADDSIFFAKADSRNVQALKNTLRSYCSASGQKINLHKSSIFFGKRCP 743
Query: 244 QSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSKAG 303
+ ++++ + LQV + YLG+P+ G + F F+ +RIWK++N W+ + LS+AG
Sbjct: 744 DAVKISVKSCLQVDNEVLQDSYLGMPTEIGLATTNFFKFLPERIWKRVNGWTDRPLSRAG 803
Query: 304 REVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLAAH 363
E ++K++ Q+IP Y MS F +P S+C++++ + WWG + + +HW SW L+
Sbjct: 804 METMLKAVAQAIPNYVMSCFRIPVSICEKMKTCIADHWWGFEDGK-KKMHWKSWSWLSTP 862
Query: 364 KNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPSYV 423
K GGM F+ FN AMLG+Q WR +T+PD+L +R+ K RYFP F +++ +PS+
Sbjct: 863 KFLGGMGFREFTTFNQAMLGRQCWRLLTDPDSLCSRVLKGRYFPNSSFWEAAQPKSPSFT 922
Query: 424 WRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCMLQ 483
WRSL + +L G RW +GDG TI I+++ WI G + T+ F + VS M +
Sbjct: 923 WRSLLFGRELLAKGVRWGVGDGKTIKIFSDNWIPGFRPQLVTTLSPFP-TDATVSCLMNE 981
Query: 484 HHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQKLL 543
+ WD + ++F I++ + D W + G YSVRSAY L +
Sbjct: 982 DARCWDGDLIRSLFPVDIAKEILQIPISRHGDADFASWPHDKLGLYSVRSAYNLARSEAF 1041
Query: 544 DISE-----------FKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
+ + W +W + P K+K +WR A L T +LR + +
Sbjct: 1042 FADQSNSGRGMASRLLESQKDWKGLWKINAPGKMKITLWRAAHECLATGFQLRRRHIPST 1101
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAG 652
CV CN D+ H+F CP ++ IW VK+ + IF L+ S+
Sbjct: 1102 DGCVFCN-RDDTVEHVFLFCPFAAQIWEEIKGKCAVKLGRNGFSTMRQWIFDFLKRGSSH 1160
Query: 653 ESALFATILWSIWKQRNN-KIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDG 711
+ L A W IW+ RNN K N Q V++ S + + L +N DG
Sbjct: 1161 ANTLLAVTFWHIWEARNNTKNNNGTVHPQRVVIKILSYV--------DMILKHNTKTVDG 1212
Query: 712 EHSQSTRVI-KWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKC 770
+ +T+ I +W P N DA+ ++ +G+G IRD+ G ++A ++ ++
Sbjct: 1213 QRGGNTQAIPRWQPPPASVWMINSDAAIFSSSRTMGVGALIRDNTGKCLVACSEMISDVV 1272
Query: 771 DVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCKTLFN 830
+ EAL + AL E L I D V+ + D + G +I D K L +
Sbjct: 1273 LPELAEALAIRRALGLAKEEGLEHIVMASDCLTVIRRIQTSGRDRSGVGCVIEDIKKLAS 1332
Query: 831 HFYENSSVEFVRRQANEAAHELAKAATLSASFHILVTPPHCIEHILINDM 880
F S + V R +N AAH LA+ A LS P I IL +D+
Sbjct: 1333 TFVLCSFMH-VNRLSNLAAHSLARNAELSTCTVYRSVIPDYIRDILCDDV 1381
>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408936|pir||A84888 hypothetical protein
At2g45230 [imported] - Arabidopsis thaliana
Length = 1374
Score = 525 bits (1353), Expect = e-147
Identities = 302/869 (34%), Positives = 454/869 (51%), Gaps = 26/869 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI LIPK M D+RPI+LCNV+YK+ K++ANRLK++L IS+ Q+ FV GR I
Sbjct: 487 TNICLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLI 546
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A EL+H + K ++ +A K DISKAYDR++W +L+ M +GF+ W++ I
Sbjct: 547 SDNILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLI 606
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV++V Y V++N G II RGLRQGDPLS YLF+IC E L +++ AE I G
Sbjct: 607 MECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITG 666
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+ AP +SHLLFADD + + + I+E ASGQ +NY KS I+F ++
Sbjct: 667 LKVARGAPPISHLLFADDSMFYCKVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKH 726
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S+ ++ + L ++ G G YLGLP SK AT +++KDR+ KK+ W S LS
Sbjct: 727 ISEERRCLVKRKLGIEREGGEGVYLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSP 786
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+K++ ++PTY MS F +P ++C +IE ++ FWW + +GRGLHW +W L+
Sbjct: 787 GGKEILLKAVAMALPTYTMSCFKIPKTICQQIESVMAEFWWKNK-KEGRGLHWKAWCHLS 845
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K GG+ FK + FN+A+LGKQ WR +T D+L+A+++K+RYF + D L + LG PS
Sbjct: 846 RPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDPLNAPLGSRPS 905
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHL-------SH 474
+ W+S+ ++ ++K G R IG+G+TI++W + WI V HL S
Sbjct: 906 FAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSI 965
Query: 475 LRVSHCMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSA 534
V +L + W+ + +F T I+ DRF W +G YSV+S
Sbjct: 966 HVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSG 1025
Query: 535 YRLCMQKL------LDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKI 588
Y + + + ++ + + + IW L VPPK+ + +WR N L L +
Sbjct: 1026 YWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLAYRH 1085
Query: 589 VNCPPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGL--NSSAVI-FHL 645
+ CV C S E HL F CP + W +S L ++ L N V+ H
Sbjct: 1086 LAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLSVHK 1145
Query: 646 LQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNN 705
Q + AL ILW +WK RN+ ++ V+ +A+ + WN N
Sbjct: 1146 SQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWN-------NRK 1198
Query: 706 VVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKC 765
S R +KW P+ G +KCN D ++ + G+G +R+ G + +
Sbjct: 1199 EPQPQVTSSTRDRCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRA 1258
Query: 766 LTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDC 825
L + V E L A+ + + FE DS+ +V S N D I D
Sbjct: 1259 LPSQQSVLETEVEALRWAVLSLSRFNYRRVIFESDSQYLV-SLIQNEMDIPSLAPRIQDI 1317
Query: 826 KTLFNHFYENSSVEFVRRQANEAAHELAK 854
+ L HF E +F RR+ N A A+
Sbjct: 1318 RNLLRHF-EEVKFQFTRREGNNVADRTAR 1345
>gb|AAG51783.1| reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
gi|25405244|pir||E96519 probable reverse transcriptase,
16838-20266 [imported] - Arabidopsis thaliana
Length = 1142
Score = 516 bits (1330), Expect = e-145
Identities = 269/704 (38%), Positives = 402/704 (56%), Gaps = 13/704 (1%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI LIPK + M + RPI+LCNV YK+ +K+L RLK VL IS+ QS FV GR I
Sbjct: 271 TNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLI 330
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+ H +T +A K D+SKAYD+++WN+++ ++ KMGF +W+ WI
Sbjct: 331 SDNILIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWI 390
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M C+ TV Y V++N + G II RGLRQGDPLS YLFI+C E L + IRKAE I G
Sbjct: 391 MWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITG 450
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+ +P VSHLLFADD F +A + ++ IL+ ES SGQ IN+ KS I F
Sbjct: 451 IKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVSGQQINFSKSSIQFGHK 510
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S + +I IL + + G G YLGLP G SK F+F++DR+ +IN WS+K LSK
Sbjct: 511 VEDSIKADIKLILGIHNLGGMGSYLGLPESLGGSKTKVFSFVRDRLQSRINGWSAKFLSK 570
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EV++KS+ ++P Y MS F LP ++ ++ + FWW +G RG+HW++WD+L
Sbjct: 571 GGKEVMIKSVAATLPRYVMSCFRLPKAITSKLTSAVAKFWWSSNG-DSRGMHWMAWDKLC 629
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+ K+DGG+ F+++ FN A+L KQ WR +T PD+L A+++K RYF + + L S ++PS
Sbjct: 630 SSKSDGGLGFRNVDDFNSALLAKQLWRLITAPDSLFAKVFKGRYFRKSNPLDSIKSYSPS 689
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ +++ ++ G R+G G +IS+WN+ WI G L+V +
Sbjct: 690 YGWRSMISARSLVYKGLIKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLI 749
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
W++ L+ +FD + V I + ED W+ G Y+V+S Y
Sbjct: 750 DSRSNFWNIDLLKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR-- 807
Query: 542 LLDISEFKVLGAWD------YIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
LD++E L D YIW ++ PPK+++ +W++ +P LR++ + C C
Sbjct: 808 -LDLNEGTTLIGPDLTTLKAYIWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGC 866
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAG-ES 654
V C +++E H F C + IW LS + I S + ++ + HL + +G +S
Sbjct: 867 VSCGASEESINHTLFQCHPARQIWALSQIPTAPGIFPSNSIFTN--LDHLFWRIPSGVDS 924
Query: 655 ALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR 698
A + I+W IWK RN K++ +V +L A W A+
Sbjct: 925 APYPWIIWYIWKARNEKVFENVDKDPMEILLLAVKEAQSWQEAQ 968
>ref|NP_917200.1| P0707D10.17 [Oryza sativa (japonica cultivar-group)]
Length = 892
Score = 516 bits (1329), Expect = e-144
Identities = 307/902 (34%), Positives = 459/902 (50%), Gaps = 38/902 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
+ LIPK + + ++D+RPI+LCNV+YK+ +K L NRL+ +LD+ +S QS FVPGR I
Sbjct: 3 STFVLIPKIEQPMELRDFRPISLCNVIYKVVSKCLVNRLRPILDELVSPCQSAFVPGRMI 62
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H + K A+KLDISKAYDR+DW +L+ +GF+ +WV+WI
Sbjct: 63 TDNAILAFECFHSIQKNRKPENAACAYKLDISKAYDRVDWGFLE-----LGFAHRWVRWI 117
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
++C+ TV YSV N + RGL QG PLS +LF+ A+GL L+ A G +
Sbjct: 118 IVCITTVRYSVKFNGTLLSTFAPSRGLCQGVPLSPFLFLFIADGLPLLLEDKVAQGALSP 177
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
VKIC AP +SHLLFADD LFF+A+ +A +K ++ A+GQ IN K I F +
Sbjct: 178 VKICRQAPGISHLLFADDTLLFFKADNVQAQAVKEVITDYALATGQLINPAKCSIMFGES 237
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ I LQ+ +YLG P+ GR K F +++RIWK++ W LS
Sbjct: 238 SPPQTRDVIRVTLQIANSGFEDRYLGFPTPEGRMCKGKFQSLQERIWKRLIIWGENLLSS 297
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS++Q+IP Y M IF LP S+C+E+ K+ +FWWG + R HW SW+ L
Sbjct: 298 GGKEVLIKSVIQTIPVYVMGIFNLPESVCEELTKLTRNFWWGVEKGK-RKTHWKSWECLT 356
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K++GG+ F+ +FN A+L +Q WR + NPD+L AR+ KA+YFP + +S G N S
Sbjct: 357 RPKSNGGLGFRDFRLFNQALLARQAWRLIVNPDSLCARVLKAKYFPNGSLVDTSFGGNAS 416
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPT-VGDFHLSHLRVSHC 480
VW+++ +LK G WRIG+G ++ IW + W+ D + P T G+ L +
Sbjct: 417 PVWKAIEYGLSLLKEGIIWRIGNGKSVRIWRDPWLPRDFSRRPITRKGNCRLKWVSE--- 473
Query: 481 MLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC-- 538
+L + WD + +F AI + + ++D W+ + +G++SVRSAY L
Sbjct: 474 LLSENGAWDETRVNQVFLPVDAEAICSIRVSSRQEDDFVAWHPDKHGKFSVRSAYGLACN 533
Query: 539 ---MQKLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
M+ S + W+ IW P KV+ WR A N L T ++ + C
Sbjct: 534 LVNMETSSSSSSARCKRMWNLIWQTNAPQKVRIFAWRAATNCLATMENKAKRKLEQSDIC 593
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESA 655
++C ED+ H+ CP + N+W + ++ + N IF L++L E
Sbjct: 594 LVCGLEKEDTKHVLCRCPDARNLWGAMCEAGNISLNGGNLCNDPGWIFDQLEILLDYERT 653
Query: 656 LFATILWSIWKQRNNKIWN----DVTDAQNFVLERASSLL-YDWNAARNARLNNNV---V 707
+F ILW IW RN + + ++ F+ SLL + N +V V
Sbjct: 654 VFLLILWRIWFVRNEIVHGKQPPPIEASKRFLESYVKSLLEIRQHPQANVEKGKHVISFV 713
Query: 708 NG---DGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTK 764
NG + KW KP G MK N+D SF GIG+ +RD G + A K
Sbjct: 714 NGKTNPARRPPEDKNQKWRKPCEGWMKVNVDGSFDAQTGSGGIGVVMRDWSGKVIFACCK 773
Query: 765 CLTPKCDVHIGEAL-----GLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFG 819
L P+C + + G+L LQW L E D VV + + +E
Sbjct: 774 HL-PRCGSALESEILACKEGILVGLQW----SLRQFVVETDCLMVVQMLESKEREMSEVA 828
Query: 820 AIINDCKTLFNHFYENSSVEFVRRQANEAAHELA-KAATLSASFHILVTPPHCIEHILIN 878
++ + L + E + + R N +H LA K S L CI ++++
Sbjct: 829 FLVKEATELLSGDRE-IQLRKIHRSQNSVSHLLANKGRCEGLSVFWLDHECSCISRLVLD 887
Query: 879 DM 880
D+
Sbjct: 888 DL 889
>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25410938|pir||G84429 hypothetical protein
At2g01840 [imported] - Arabidopsis thaliana
Length = 1715
Score = 512 bits (1319), Expect = e-143
Identities = 299/888 (33%), Positives = 463/888 (51%), Gaps = 46/888 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK M D+RPI+LC YKI +K+L RLK+ L ISD+Q+ FVPG++I
Sbjct: 849 TQICLIPKIIDPKHMSDYRPISLCTASYKIISKILIKRLKQCLGDVISDSQAAFVPGQNI 908
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A EL+H K++ + G VA K DISKAYDR++WN+L+ VM+++GF+ +WVKWI
Sbjct: 909 SDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWI 968
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V Y V++N G I RG+RQGDPLS YLF+ CAE LS+++RKAE + IHG
Sbjct: 969 MTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHG 1028
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+KI + +SHLLFADD F RA + I + E ASGQ INY KS I F +
Sbjct: 1029 MKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASGQKINYAKSSIIFGQK 1088
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
++ + +L + V G GKYLGLP GR K F +I ++ ++ W+ LS
Sbjct: 1089 IPTMRRQRLHRLLGIDNVRGGGKYLGLPEQLGRRKVELFEYIVTKVKERTEGWAYNYLSP 1148
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++K++ ++P Y M+ F LPT +C+EI ++ +FWWG
Sbjct: 1149 AGKEIVIKAIAMALPVYSMNCFLLPTLICNEINSLITAFWWG------------------ 1190
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+N+G + FK L FN A+L KQ WR +TNP +L+AR+YK Y+P +L+++ G + S
Sbjct: 1191 -KENEGDLGFKDLHQFNRALLAKQAWRILTNPQSLLARLYKGLYYPNTTYLRANKGGHAS 1249
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIP-PTVGDFHLSHLRVSHC 480
Y W S+ K +L+ G R R+GDG T IW + W+ TL P P G ++V+
Sbjct: 1250 YGWNSIQEGKLLLQQGLRVRLGDGQTTKIWEDPWLP---TLPPRPARGPILDEDMKVADL 1306
Query: 481 MLQHHKMWDVPFLETIF--DQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC 538
++ + WD E + + Q +A + S Y + D + W N +Y+VRS Y +
Sbjct: 1307 WRENKREWDPVIFEGVLNPEDQQLAKSLYLSNYAA--RDSYKWAYTRNTQYTVRSGYWVA 1364
Query: 539 MQKLLDISEFKVLGAWD-------YIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNC 591
++++E +++ + IW LK+ PK+K+ +WR L T +LR + +
Sbjct: 1365 TH--VNLTEEEIINPLEGDVPLKQEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPA 1422
Query: 592 PPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIF---HLLQV 648
P C C +ADE H+ F C + +W +N S ++ + L + + Q
Sbjct: 1423 DPTCQRCCNADETINHIIFTCSYAQVVWRSANFSGSNRLCFTDNLEENIRLILQGKKNQN 1482
Query: 649 LSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW--NAARNARLNNNV 706
L + I+W +WK RN ++ + V ++A +W + +++N
Sbjct: 1483 LPILNGLMPFWIMWRLWKSRNEYLFQQLDRFPWKVAQKAEQEATEWVETMVNDTAISHNT 1542
Query: 707 VNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCL 766
+ +R +WS P G +KCN D+ + + G +RD G + + L
Sbjct: 1543 AQSNDR--PLSRSKQWSSPPEGFLKCNFDSGYVQGRDYTSTGWILRDCNGRVLHSGCAKL 1600
Query: 767 TPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCK 826
EALG L ALQ V + FE D+ ++ + D ++ D +
Sbjct: 1601 QQSYSALQAEALGFLHALQMVWIRGYCYVWFEGDNLELTNLIN-KTEDHHLLETLLYDIR 1659
Query: 827 TLFNHFYENSSVEFVRRQANEAAHELAK-AATLSASFHILVTPPHCIE 873
SS+ +V R+ N AA +L K A ++S+ + PP ++
Sbjct: 1660 FWMTKL-PFSSIGYVNRERNLAADKLTKYANSMSSLYETFHVPPRWLQ 1706
>gb|AAP53315.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37533452|ref|NP_921028.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|20279456|gb|AAM18736.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)]
Length = 1509
Score = 511 bits (1316), Expect = e-143
Identities = 285/778 (36%), Positives = 406/778 (51%), Gaps = 55/778 (7%)
Query: 34 KVLANRLKRVLDKCISDNQSPFVPGRSILDNAMAAIELVHYKKTKVKGTQGDVAFKLDIS 93
KVLANRLK++L IS QS FVPGR I DN + A E+ HY + K G G AFKLD+S
Sbjct: 720 KVLANRLKKILPDVISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMS 779
Query: 94 KAYDRIDWNYLKCVMLKMGFSIQWVKWIMMCVETVDYSVIVNEEIAGPIIHGRGLRQGDP 153
KAYDR++W++L +MLK+GF WV IM CV TV Y + VN E++ RGLRQGDP
Sbjct: 780 KAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDP 839
Query: 154 LSTYLFIICAEGLSSLIRKAEASGTIHGVKICNNAPIVSHLLFADDCFLFFRAEPSEAMV 213
LS YLF++CAEG S+L+ K E G +HG++IC AP VSHLLFADD + RA EA
Sbjct: 840 LSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQ 899
Query: 214 MKNILEVNESASGQAINYQKSEIFFSRNGSQSKQLNIPNILQVQAVLGTGKYLGLPSMTG 273
++ IL++ E SGQ IN KS + FS N S ++ + L +Q KYLGLP G
Sbjct: 900 LQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGLPVFVG 959
Query: 274 RSKKATFNFIKDRIWKKINSWSSKCLSKAGREVLMKSMLQSIPTYFMSIFTLPTSLCDEI 333
RS+ F+++K+RIW++I W K LS+AG+E+L+K++ Q IPT+ M F L LCD+I
Sbjct: 960 RSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKDLCDQI 1019
Query: 334 EKMLNSFWWGHSGTQGRGLHWLSWDRLAAHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNP 393
KM+ +WW + + +HWLSW++L KN GG+ F+ + +FNLAML KQGWR + +P
Sbjct: 1020 SKMIAKYWWSNQEKDNK-MHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDP 1078
Query: 394 DTLIARIYKARYFPRCDFLQSSLGHNPSYVWRSLCNSKFILKAGSRWRIGDGDTISIWNN 453
D+L +R+ +A+YFP D + N SY WRS+ +L+ G WR+GDG I+IW +
Sbjct: 1079 DSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWAD 1138
Query: 454 KWIAGDITLIPPTVGDFHLSHLRVSHCMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTS 513
WI + P T +L +V + + WD L F ++ VAAI ++
Sbjct: 1139 PWIPRGWSRKPMTPRGANLV-TKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVE 1197
Query: 514 IKEDRFVWNKENNGEYSVRSAYRLCMQKLLDISEFKVLGA----------WDYIWNLKVP 563
+ ED W+ + G ++V+SAY++ + S G W +W L VP
Sbjct: 1198 M-EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVP 1256
Query: 564 PKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCNSADEDSLHLFFNCPSSSNIWNLSN 623
K+K+ +WR+ N L R L + ++ CV+C +ED+ HLFF C +W N
Sbjct: 1257 GKIKHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALN 1316
Query: 624 LSNDVKIVVSQGLNSSAVIFHLLQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFV 683
L ++ Q S + + E LW WK+RN +
Sbjct: 1317 LEELRSMLEQQ--TSGKNVLQSIYCRPENERTSAIVCLWQWWKERNEE------------ 1362
Query: 684 LERASSLLYDWNAARNARLNNNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNEN 743
++ R V W +P +K N D ++ +N
Sbjct: 1363 --------------KSPRTGECAV--------------WRRPPLNFVKINTDGAYSSNMK 1394
Query: 744 RIGIGICIRDDEGAFVIARTKCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDS 801
+ G G IRD GA + A D E + A++ E + IE E DS
Sbjct: 1395 QGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGMSRIELETDS 1452
>emb|CAB75484.1| putative protein [Arabidopsis thaliana] gi|11357921|pir||T47495
hypothetical protein F9K21.130 - Arabidopsis thaliana
Length = 851
Score = 501 bits (1291), Expect = e-140
Identities = 284/750 (37%), Positives = 416/750 (54%), Gaps = 23/750 (3%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K + NRLK L+ +SD+Q+ F+PGR I
Sbjct: 108 TNICMIPKIQNPQTLSDYRPIALCNVLYKVISKCMVNRLKAHLNSIVSDSQAAFIPGRII 167
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 168 NDNVMIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWI 227
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI+ +SG I G
Sbjct: 228 MAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRG 287
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 288 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSLITFGSR 347
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + +L + G GKYLGLP GR KK FN+I DR+ ++ SWS+K LS
Sbjct: 348 VYGSTQTRLKTLLNIPNQGGGGKYLGLPEQFGRKKKEMFNYIIDRVKERTASWSAKFLSP 407
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+L+KS+ ++P Y MS F LP + EIE +L +FWW + RG+ W++W RL
Sbjct: 408 AGKEILLKSVALAMPVYAMSCFKLPQGIVSEIESLLMNFWW-EKASNKRGIPWVAWKRLQ 466
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF + + S
Sbjct: 467 YSKKEGGLGFRDLAKFNDALLAKQAWRIIQYPNSLFARVMKARYFKDNSIIDAKTRSQQS 526
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +L+ G+R+ IGDG TI + + + D P + D + L + +
Sbjct: 527 YGWSSLLSGIALLRKGTRYVIGDGKTIRLGIDNVV--DSHPPRPLLTDEQHNGLSLDNLF 584
Query: 482 LQ--HHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCM 539
H + WD L+T DQ I + L T K DR +W+ + G+Y+VRS Y L
Sbjct: 585 QHRGHSRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLST 644
Query: 540 QKLLDI--SEFKVLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPH 594
+ + K G+ D IWNL + PK+K+ +WR+ LPT RL + + P
Sbjct: 645 HDPSNTIPTMAKPHGSVDLKTKIWNLPIMPKLKHFLWRILSKALPTTDRLTTRGMRIDPG 704
Query: 595 CVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSS-AVIFHLLQ--VLSA 651
C C +E H F CP ++ W LS+ ++S + + + I LLQ ++
Sbjct: 705 CPRCRRENESINHALFTCPFATMAWRLSDTPLYRSSILSNNIEDNISNILLLLQNTTITD 764
Query: 652 GESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDG 711
+ + +LW IWK RNN ++N++ ++ + + RA + +W LN G
Sbjct: 765 SQKLIPFWLLWRIWKARNNVVFNNLRESPSITVVRAKAETNEW-------LNATQTQGPR 817
Query: 712 EHSQSTRV---IKWSKPNRGRMKCNIDASF 738
+ T W KP +KCN DASF
Sbjct: 818 RLPKRTTAAGNTTWVKPQMPYIKCNFDASF 847
>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25412331|pir||G84649 hypothetical protein
At2g25550 [imported] - Arabidopsis thaliana
Length = 1750
Score = 501 bits (1289), Expect = e-140
Identities = 311/881 (35%), Positives = 458/881 (51%), Gaps = 37/881 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K L NRLK L+ +SD+Q+ F+PGR I
Sbjct: 869 TNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 928
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 929 NDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWI 988
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI +SG + G
Sbjct: 989 MAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRG 1048
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 1049 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSR 1108
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + IL++ G GKYLGLP GR KK F +I DR+ K+ ++WS++ LS
Sbjct: 1109 VYGSTQSRLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSP 1168
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++KS+ ++P Y MS F LP + EIE +L +FWW + Q RG+ W++W RL
Sbjct: 1169 AGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGIPWVAWKRLQ 1227
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF L + + S
Sbjct: 1228 YSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQS 1287
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +LK G+R IGDG I I + + PP + ++ ++
Sbjct: 1288 YGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH----PPRPLNTEETYKEMTINN 1343
Query: 482 LQHHK----MWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY-R 536
L K WD + DQ I + L S K D+ +WN GEY+VRS Y
Sbjct: 1344 LFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWL 1403
Query: 537 LCMQKLLDISEFK-VLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
L +I G+ D IWNL + PK+K+ +WR L T RL + +
Sbjct: 1404 LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1463
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSN--------LSNDVKIVVSQGLNSSAVIFH 644
P C C+ +E H F CP ++ W LS+ +SND + +S LN F
Sbjct: 1464 PSCPRCHRENESINHALFTCPFATMAWRLSDSSLIRNQLMSNDFEENISNILN-----FV 1518
Query: 645 LLQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW-NAARNARLN 703
+S L ++W IWK RNN ++N ++ + + A + +DW NA ++ +
Sbjct: 1519 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1578
Query: 704 NNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIART 763
+ E+ I+W P +KCN DA F + G IR+ G + +
Sbjct: 1579 PSPTRQIAENK-----IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGS 1633
Query: 764 KCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSF-GANRHDSTEFGAII 822
L + E LL ALQ + E D + +++ G + H S +
Sbjct: 1634 MKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHL 1691
Query: 823 NDCKTLFNHFYENSSVEFVRRQANEAAHELAKAATLSASFH 863
D N F + F+R++ N+ AH LAK ++F+
Sbjct: 1692 EDISFWANKF-ASIQFGFIRKKGNKLAHVLAKYGCTYSTFY 1731
>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25408166|pir||G84721 hypothetical protein
At2g31520 [imported] - Arabidopsis thaliana
Length = 1524
Score = 499 bits (1286), Expect = e-139
Identities = 312/881 (35%), Positives = 458/881 (51%), Gaps = 37/881 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI +IPK ++ D+RPIALCNV+YK+ +K L NRLK L+ +SD+Q+ F+PGR I
Sbjct: 643 TNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSDSQAAFIPGRII 702
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN M A E++H K + + ++ +A K D+SKAYDR++W++L+ M GF +W+ WI
Sbjct: 703 NDNVMIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWI 762
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M V++V YSV++N G I RG+RQGDPLS YLFI+C + LS LI +SG + G
Sbjct: 763 MAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRG 822
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
V+I N AP ++HL FADD F +A +K++ +V E SGQ IN QKS I F
Sbjct: 823 VRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINVQKSMITFGSR 882
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S Q + IL++ G GKYLGLP GR KK F +I DR+ K+ ++WS++ LS
Sbjct: 883 VYGSTQSKLKQILEIPNQGGGGKYLGLPEQFGRKKKEMFEYIIDRVKKRTSTWSARFLSP 942
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E+++KS+ ++P Y MS F LP + EIE +L +FWW + Q RG+ W++W RL
Sbjct: 943 AGKEIMLKSVALAMPVYAMSCFKLPKGIVSEIESLLMNFWWEKASNQ-RGIPWVAWKRLQ 1001
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ L FN A+L KQ WR + P++L AR+ KARYF L + + S
Sbjct: 1002 YSKKEGGLGFRDLAKFNDALLAKQAWRLIQYPNSLFARVMKARYFKDVSILDAKVRKQQS 1061
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W SL + +LK G+R IGDG I I + + PP + ++ ++
Sbjct: 1062 YGWASLLDGIALLKKGTRHLIGDGQNIRIGLDNIVDSH----PPRPLNTEETYKEMTINN 1117
Query: 482 LQHHK----MWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY-R 536
L K WD + DQ I + L S K D+ +WN GEY+VRS Y
Sbjct: 1118 LFERKGSYYFWDDSKISQFVDQSDHGFIHRIYLAKSKKPDKIIWNYNTTGEYTVRSGYWL 1177
Query: 537 LCMQKLLDISEFK-VLGAWDY---IWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCP 592
L +I G+ D IWNL + PK+K+ +WR L T RL + +
Sbjct: 1178 LTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKHFLWRALSQALATTERLTTRGMRID 1237
Query: 593 PHCVLCNSADEDSLHLFFNCPSSSNIWNLSN--------LSNDVKIVVSQGLNSSAVIFH 644
P C C+ +E H F CP ++ W LS+ +SND + +S LN F
Sbjct: 1238 PICPRCHRENESINHALFTCPFATMAWWLSDSSLIRNQLMSNDFEENISNILN-----FV 1292
Query: 645 LLQVLSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDW-NAARNARLN 703
+S L ++W IWK RNN ++N ++ + + A + +DW NA ++ +
Sbjct: 1293 QDTTMSDFHKLLPVWLIWRIWKARNNVVFNKFRESPSKTVLSAKAETHDWLNATQSHKKT 1352
Query: 704 NNVVNGDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIART 763
+ E+ I+W P +KCN DA F + G IR+ G + +
Sbjct: 1353 PSPTRQIAENK-----IEWRNPPATYVKCNFDAGFDVQKLEATGGWIIRNHYGTPISWGS 1407
Query: 764 KCLTPKCDVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSF-GANRHDSTEFGAII 822
L + E LL ALQ + E D + +++ G + H S +
Sbjct: 1408 MKLAHTSNPLEAETKALLAALQQTWIRGYTQVFMEGDCQTLINLINGISFHSS--LANHL 1465
Query: 823 NDCKTLFNHFYENSSVEFVRRQANEAAHELAKAATLSASFH 863
D N F + F+RR+ N+ AH LAK ++F+
Sbjct: 1466 EDISFWANKF-ASIQFGFIRRKGNKLAHVLAKYGCTYSTFY 1505
>gb|AAD03565.2| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411819|pir||H84557 hypothetical protein
At2g17910 [imported] - Arabidopsis thaliana
Length = 1344
Score = 493 bits (1268), Expect = e-137
Identities = 269/767 (35%), Positives = 415/767 (54%), Gaps = 19/767 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T+I LIPK M D RPI+LC+V+YKI +K+L RLK+ L +S QS FVP R I
Sbjct: 465 THICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLI 524
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E++H +T + ++ +AFK D+SKAYDR++W +L+ +M +GF+ +W+ WI
Sbjct: 525 SDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWI 584
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G II RG+RQGDPLS LF++C E L ++ KAE +G I G
Sbjct: 585 MNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITG 644
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ + V+HLLFADD L +A E + L SGQ IN KS I F +N
Sbjct: 645 IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKN 704
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ I + + GTGKYLGLP SK+ F FIK+++ ++ W +K LS+
Sbjct: 705 VDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQ 764
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS+ ++P Y MS F LP +LC ++ ++ FWW +S Q R +HWLSW RL
Sbjct: 765 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLT 823
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG FK L FN A+L KQ WR + +L +R++++RYF DFL ++ G PS
Sbjct: 824 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 883
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ + +L G R IG+G +W +KW+ P F L+VS +
Sbjct: 884 YAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLI 943
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQ- 540
+ W++ L +F + V I+K KED F W +NG YSV++ Y +
Sbjct: 944 DPTSRNWNLNMLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQ 1002
Query: 541 ---KLLDISEFK--VLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+L ++ K V +D IWNL PK++ +W+ +P RLR + + C
Sbjct: 1003 VHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGC 1062
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESA 655
++C++ +E H+ F CP + +W +++LS+ + + + + L Q
Sbjct: 1063 LMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHL 1122
Query: 656 LFAT--ILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGEH 713
F + ILW +WK RN ++ ++++A ++W +A+ N D +H
Sbjct: 1123 RFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQN------DEKH 1176
Query: 714 SQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVI 760
++ KW P G +KCNI ++ + G +RD +G ++
Sbjct: 1177 ---LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLL 1220
>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
(fragment)
Length = 1365
Score = 493 bits (1268), Expect = e-137
Identities = 269/767 (35%), Positives = 415/767 (54%), Gaps = 19/767 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T+I LIPK M D RPI+LC+V+YKI +K+L RLK+ L +S QS FVP R I
Sbjct: 486 THICLIPKITSPQRMSDLRPISLCSVLYKIISKILTQRLKKHLPAIVSTTQSAFVPQRLI 545
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E++H +T + ++ +AFK D+SKAYDR++W +L+ +M +GF+ +W+ WI
Sbjct: 546 SDNILVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWI 605
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G II RG+RQGDPLS LF++C E L ++ KAE +G I G
Sbjct: 606 MNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITG 665
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ + V+HLLFADD L +A E + L SGQ IN KS I F +N
Sbjct: 666 IQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSGQMINLNKSAITFGKN 725
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ I + + GTGKYLGLP SK+ F FIK+++ ++ W +K LS+
Sbjct: 726 VDIQIKDWIKSRSGISLEGGTGKYLGLPECLSGSKRDLFGFIKEKLQSRLTGWYAKTLSQ 785
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS+ ++P Y MS F LP +LC ++ ++ FWW +S Q R +HWLSW RL
Sbjct: 786 GGKEVLLKSIALALPVYVMSCFKLPKNLCQKLTTVMMDFWW-NSMQQKRKIHWLSWQRLT 844
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG FK L FN A+L KQ WR + +L +R++++RYF DFL ++ G PS
Sbjct: 845 LPKDQGGFGFKDLQCFNQALLAKQAWRVLQEKGSLFSRVFQSRYFSNSDFLSATRGSRPS 904
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ + +L G R IG+G +W +KW+ P F L+VS +
Sbjct: 905 YAWRSILFGRELLMQGLRTVIGNGQKTFVWTDKWLHDGSNRRPLNRRRFINVDLKVSQLI 964
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQ- 540
+ W++ L +F + V I+K KED F W +NG YSV++ Y +
Sbjct: 965 DPTSRNWNLNMLRDLFPWKDVEIILK-QRPLFFKEDSFCWLHSHNGLYSVKTGYEFLSKQ 1023
Query: 541 ---KLLDISEFK--VLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+L ++ K V +D IWNL PK++ +W+ +P RLR + + C
Sbjct: 1024 VHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRSDDGC 1083
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESA 655
++C++ +E H+ F CP + +W +++LS+ + + + + L Q
Sbjct: 1084 LMCDTENETINHILFECPLARQVWAITHLSSAGSEFSNSVYTNMSRLIDLTQQNDLPHHL 1143
Query: 656 LFAT--ILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDGEH 713
F + ILW +WK RN ++ ++++A ++W +A+ N D +H
Sbjct: 1144 RFVSPWILWFLWKNRNALLFEGKGSITTTLVDKAYEAYHEWFSAQTHMQN------DEKH 1197
Query: 714 SQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVI 760
++ KW P G +KCNI ++ + G +RD +G ++
Sbjct: 1198 ---LKITKWCPPLPGELKCNIGFAWSKQHHFSGASWVVRDSQGKVLL 1241
>gb|AAP54692.1| putative reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|37536206|ref|NP_922405.1| putative
reverse transcriptase [Oryza sativa (japonica
cultivar-group)] gi|27311287|gb|AAO00713.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1557
Score = 470 bits (1209), Expect = e-130
Identities = 251/699 (35%), Positives = 380/699 (53%), Gaps = 31/699 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK + ++D+RPI+LCNV+YK+ +K L NRL+ LD+ IS NQS FVP R I
Sbjct: 875 TAIVLIPKIEQPRDLRDFRPISLCNVIYKVLSKCLVNRLRPFLDELISKNQSAFVPRRMI 934
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H+ + A+KLD+SKAYDR+DW +L+ M K GFS WV W+
Sbjct: 935 TDNALLAFECFHFIQRNKNPRSAACAYKLDLSKAYDRVDWRFLEQSMYKWGFSHCWVSWV 994
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M C+ TV +G +LF+ A+GLS L+ + G I
Sbjct: 995 MTCISTV-------------------CDKGTRCDPFLFLFVADGLSLLLEEKVEQGAISP 1035
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+++C+ AP +SHLLFADD LFF+A+ S++ +K + +++GQ IN K I F +
Sbjct: 1036 IRVCHQAPGISHLLFADDTLLFFKADLSQSQAIKEVFGSYATSTGQLINPTKCSILFGNS 1095
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I N LQ+ + KYLGLP+ GR K F +++RIWKKI W LS
Sbjct: 1096 LPIASRDAITNCLQIASTEFEDKYLGLPTPGGRMHKGRFQSLRERIWKKILQWGENYLSS 1155
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+K+++Q+IP Y M IF LP S+C+++ + +FWWG + R HW +W L
Sbjct: 1156 GGKEVLIKAVIQAIPVYVMGIFKLPESVCEDLTSLTRNFWWGAEKGK-RKTHWKAWKSLT 1214
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG+ FK + +FN A+L +Q WR + NPD+L AR+ KA+Y+P + +S G N S
Sbjct: 1215 KSKSLGGLGFKDIRLFNQALLARQAWRLIDNPDSLCARVLKAKYYPNGSIVDTSFGGNAS 1274
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
W+++ + ++K G WRIG+G ++ +W + W+ D++ P T + + V+ M
Sbjct: 1275 PGWQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKN-NCRIKWVADLM 1333
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC--- 538
L + MWD + IF V I+K + +ED W+ + G +SVR+AYRL
Sbjct: 1334 LD-NGMWDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTAYRLAENW 1392
Query: 539 --MQKLLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCV 596
+ S+ + AW+ +W VP KVK WR N LPT +++ + CV
Sbjct: 1393 AKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNLEISDTCV 1452
Query: 597 LCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSAGESAL 656
+C ED++H CP + ++W SND+ + + L + +F+ L +L E +
Sbjct: 1453 ICGMEKEDTMHALCRCPQAKHLWLAMKESNDLSLRMDDHLLGPSWLFNRLALLPDHEQPM 1512
Query: 657 FATILWSIWKQRNNKIWN----DVTDAQNFVLERASSLL 691
F +LW IW N I + +Q F+ SLL
Sbjct: 1513 FLMVLWRIWFVHNEIIHGKPSPSIEASQRFLQSYMKSLL 1551
>gb|AAF97969.1| F21J9.30 [Arabidopsis thaliana]
Length = 1270
Score = 461 bits (1185), Expect = e-128
Identities = 260/727 (35%), Positives = 393/727 (53%), Gaps = 50/727 (6%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K++A RL+ L + +SD QS FV R I
Sbjct: 450 THLCLIPKTQHPTEMVDLRPISLCSVLYKIISKIMAKRLQPWLPEIVSDTQSAFVSERLI 509
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A ELVH K + + +A K D+SKAYDR++W+YL+ ++L +GF ++WV WI
Sbjct: 510 TDNILVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWI 569
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M+CV +V YSV++N+ G II RGLRQGDPLS +LF++C EGL+ L+ KA+ G + G
Sbjct: 570 MVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEG 629
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ N P+V HLLFADD +A +++V++ IL+V +A+GQ IN KS I F
Sbjct: 630 IQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNATGQTINLNKSSITFGEK 689
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I L + G G YLGLP SK +++KDR+ +K++ W ++CLS+
Sbjct: 690 VDEQLKGTIRTCLGIFTEGGAGTYLGLPECFSGSKVDMLHYLKDRLKEKLDVWFTRCLSQ 749
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EVL+KS+ ++P + MS F LP + C+ +E + SFWW S R +HW SW+RL
Sbjct: 750 GGKEVLLKSVALAMPVFAMSCFKLPITTCENLESAMASFWW-DSCDHSRKIHWQSWERLC 808
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG+ F+ + FN A+L KQ WR + PD L++R+ K+RYF DFL ++L PS
Sbjct: 809 LPKDSGGLGFRDIQSFNQALLAKQAWRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPS 868
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
+ WRS+ + +L G + R+GDG ++ +W + WI + P + L+V +
Sbjct: 869 FGWRSILFGRELLSKGLQKRVGDGASLFVWIDPWIDDNGFRAPWRKNLIYDVTLKVKALL 928
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
WD L +F + + IK + D FVW +G++SV+SAY L Q
Sbjct: 929 NPRTGFWDEEVLHDLFLPEDILR-IKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQT 987
Query: 542 LLDISEFKV------LGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+V LG +WNL+ PK+K +W+V
Sbjct: 988 KSQNLRSEVSMQPSTLGLKTQVWNLQTDPKIKIFLWKV---------------------- 1025
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAV---IFHLLQVLSAG 652
C E + H F CP S IW LS+ G ++ ++ I HLL+
Sbjct: 1026 --CGELGESTNHTLFLCPLSRQIWALSDYP-----FPPDGFSNGSIYSNINHLLENKDNK 1078
Query: 653 E-----SALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAAR-----NARL 702
E +F ILW IWK RN+ I+ ++ + + + +W A+ + L
Sbjct: 1079 EWPINLRKIFPWILWRIWKNRNSFIFEGISYPATDTVIKIRDDVVEWFEAQCLDGEGSAL 1138
Query: 703 NNNVVNG 709
N + NG
Sbjct: 1139 NPPLSNG 1145
>gb|AAV32224.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
gi|45267888|gb|AAS55787.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 1936
Score = 460 bits (1184), Expect = e-128
Identities = 247/649 (38%), Positives = 362/649 (55%), Gaps = 13/649 (2%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK D + +KD+RPI+LCNVVYK+ +K L NRL+ +LD +S QS F+ GR I
Sbjct: 1127 TAIVLIPKKDQPIDLKDYRPISLCNVVYKVVSKCLVNRLRPILDDLVSKEQSAFIQGRMI 1186
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H + K A+KLD+SKAYDR+DW +L+ + K+GF+ +WV WI
Sbjct: 1187 TDNALLAFECFHSIQKNKKANSAACAYKLDLSKAYDRVDWRFLELALNKLGFAHRWVSWI 1246
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M+CV TV YSV N + RGLRQG+PLS +LF+ A+GLS L+++ A ++
Sbjct: 1247 MLCVTTVRYSVKFNGTLLRSFAPTRGLRQGEPLSPFLFLFVADGLSLLLKEKVAQNSLTP 1306
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+KIC AP +S+LLFADD LFF+AE EA V+K +L +GQ IN K I F
Sbjct: 1307 LKICRQAPGISYLLFADDTLLFFKAEKKEAEVVKEVLTNYAQGTGQLINPAKCSILFGEA 1366
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
S +I N LQV+ +YLG P+ GR K F ++ +I K++ W LS
Sbjct: 1367 SPSSVSEDIRNTLQVERDNFEDRYLGFPTPEGRMHKGRFQSLQAKIAKRVIQWGENFLSS 1426
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+K+++Q+IP Y M +F P S+ DE+ KM +FWWG + R HW +WD L
Sbjct: 1427 GGKEILIKAVIQAIPVYVMGLFKFPDSVYDELTKMTRNFWWGADNGR-RRTHWRAWDSLT 1485
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K +GG+ F+ +FN A+L +Q WR + P++L A++ KA+YFP ++ N S
Sbjct: 1486 KAKINGGLGFRDYKLFNQALLTRQAWRLIEFPNSLCAQVLKAKYFPHGSLTDTTFSANAS 1545
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
W + +LK G WRIG+G+++ IW + WI D++ P V L+ +
Sbjct: 1546 PTWHGIEYGLDLLKKGIIWRIGNGNSVRIWRDPWIPRDLSRRP--VSSKANCRLKWVSDL 1603
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
+ WD + F + I K + ++ED W+ + G +SVRSAY+L +Q
Sbjct: 1604 IAEDGTWDSAKINQYFLKIDADIIQKICISARLEEDFIAWHPDKTGRFSVRSAYKLALQ- 1662
Query: 542 LLDI------SEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
L D+ S ++ +W+ IW VP KV+ WRVA N L T +++ + C
Sbjct: 1663 LADMNNCSSSSSSRLNKSWELIWKCNVPQKVRIFAWRVASNSLATMENKKKRNLERFDVC 1722
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFH 644
+C+ ED+ H C ++++W NL K VVS + I H
Sbjct: 1723 GICDREKEDAGHALCRCVHANSLW--VNLEKG-KYVVSVNFPKTTAIKH 1768
Score = 51.6 bits (122), Expect = 1e-04
Identities = 41/150 (27%), Positives = 63/150 (41%), Gaps = 11/150 (7%)
Query: 712 EHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKCD 771
+H+ +W +P G MK N+D SF N + GIG+ +R+ G + + + L C
Sbjct: 1767 KHTPGAENRRWERPRNGWMKLNVDGSFDINSEKGGIGMILRNCLGNVIFSSCRSL-DSCS 1825
Query: 772 VHIGEAL-----GLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCK 826
+ L GL AL W L PI+ E D V+ D + I + K
Sbjct: 1826 GPLEAELHACVEGLHLALHWT----LLPIQVETDCSSVIQLLNHPDKDRSVLANIAQEAK 1881
Query: 827 TLFNHFYENSSVEFVRRQANEAAHELAKAA 856
+L ++ V+R N +H LA A
Sbjct: 1882 SLMAG-DRQIAISKVQRSQNVISHFLANKA 1910
>emb|CAE04866.2| OSJNBa0086O06.14 [Oryza sativa (japonica cultivar-group)]
gi|50928373|ref|XP_473714.1| OSJNBa0086O06.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1205
Score = 460 bits (1183), Expect = e-127
Identities = 267/776 (34%), Positives = 404/776 (51%), Gaps = 66/776 (8%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I +IPK + V MKD+RP++LCNV+YK+ AK L NRL+ +L + IS+ QS FVPGR I
Sbjct: 475 TVIVMIPKTNAPVEMKDFRPVSLCNVIYKVVAKCLVNRLRPLLQEIISETQSAFVPGRMI 534
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H + +Q A KLD+SKAYDR+DW +L + K+GF W KWI
Sbjct: 535 TDNALVAFECFHSIHKCTRESQDFCALKLDLSKAYDRVDWGFLDGALQKLGFGNIWRKWI 594
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV +N + P RGLR+GDPL+ YLF+ A+GLS+++++ I
Sbjct: 595 MSCVTSVRYSVRLNGNMLEPFYPTRGLREGDPLNPYLFLFIADGLSNILQRRRDERQIQP 654
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+C +AP VSHLLFADD LFF+AE +A +K L++ E +GQ IN ++ + FS
Sbjct: 655 LKVCRSAPGVSHLLFADDSLLFFKAEVIQATRIKEALDLYERCTGQLINPKECSLLFSAL 714
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
Q +Q I +LQV+ K LGLP+ GR K F IK+R K++ WS + LS
Sbjct: 715 CPQERQDGIKAVLQVERTCFDDKCLGLPTPDGRMKAEQFQPIKERFEKRLTDWSERFLSL 774
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
AG+E L+KS+ Q++PTY M +F +P C+E E+++ +FWWGH + + +HW++W++L
Sbjct: 775 AGKEALIKSVAQALPTYTMGVFKMPERFCEEYEQLVRNFWWGHEKGE-KKVHWIAWEKLT 833
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+ K GG+ F+ + FN A+L +Q WR + +PD+L AR+ KA+Y+P ++ S
Sbjct: 834 SPKLLGGLGFRDIRCFNQALLARQAWRLIESPDSLCARVLKAKYYPNGTITDTAFPSVSS 893
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIA--GDITLIPPTVGDFHLSHLRVSH 479
W+ + + +LK G WRIGDG IW N W+A ++ ++ + + V
Sbjct: 894 PTWKGIVHGLELLKKGLIWRIGDGSKTKIWRNHWVAHGENLKILEKKTWN---RVIYVRE 950
Query: 480 CMLQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCM 539
++ K W+ P + I ++ I+K + +ED W+ E G +SVRS YRL
Sbjct: 951 LIVTDTKTWNEPLIRHIIREEDADEILKIRIPQREEEDFPAWHYEKTGIFSVRSVYRLAW 1010
Query: 540 QKLLDISEFKVLGA--------WDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNC 591
SE + WD +W V PKV+ W++A++ L T +++ +
Sbjct: 1011 NLARKTSEQASSSSGGADGRKIWDNVWKANVQPKVRVFAWKLAQDRLATWENKKKRKIEM 1070
Query: 592 PPHCVLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQVLSA 651
C +C +E H C +++ L +S L + +
Sbjct: 1071 FGTCPICGQKEETGFHATVEC------------------TLAKALRAS-----LREHWTL 1107
Query: 652 GESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGDG 711
+ +LF+ W V +L+R SS + A AR + + G G
Sbjct: 1108 PDESLFS---------MTGPDWLLV------LLDRLSS---EKKAQLPARKHMEDIKGKG 1149
Query: 712 EHSQ-----------STRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEG 756
Q + KWS P G K N+DA++ GI IRD G
Sbjct: 1150 PMFQDPCQKEQTCQLNAEKEKWSCPPDGSAKLNVDAAYRTETGEASAGIIIRDCRG 1205
>gb|AAP52395.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531612|ref|NP_920108.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1694
Score = 459 bits (1181), Expect = e-127
Identities = 240/585 (41%), Positives = 335/585 (57%), Gaps = 11/585 (1%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T I LIPK + +KD+RPI+LCNVVYKI +K L NRL+ +LD +S NQS FVPGR I
Sbjct: 1101 TAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLI 1160
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DNA+ A E H+ + A+KLD+SKAYDR+DW +L+ M+K+GF+ WVKWI
Sbjct: 1161 TDNALIAFEYFHHIQRNKNPENAYSAYKLDLSKAYDRVDWEFLEQAMVKLGFAHCWVKWI 1220
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M C+ V Y+V +N + RGLRQGDPLS +LF+ A+GLS L+ + G ++
Sbjct: 1221 MACITLVRYAVKLNGTLLNTFAPSRGLRQGDPLSPFLFLFVADGLSFLLEEKVDQGAMNP 1280
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+ IC +AP V HLLFADD LFF+A +A+VMK +LE S +GQ IN K I F ++
Sbjct: 1281 IHICRHAPAVLHLLFADDTPLFFKAANDQAVVMKEVLETYASCTGQLINPSKCSIMFGQS 1340
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ Q I LQ+ KYLG P+ GR K F +++R+WK+I W K LS
Sbjct: 1341 SPTAVQNQIKQTLQISNSF-EDKYLGFPTPEGRMTKGKFQSLQERLWKRIMLWGEKFLST 1399
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+K++LQ++P Y M +F LP S+C+E+ K++ +FWWG R HW SWD L
Sbjct: 1400 GGKEILIKAVLQAMPVYVMGLFKLPESVCEELTKLVRNFWWGAEKGM-RRTHWKSWDCLI 1458
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
A K GGM F+ +FN A+L +Q WR + PD+L ARI KA Y+P + +S G N S
Sbjct: 1459 AQKLKGGMGFRDFRLFNQALLARQAWRLLDRPDSLCARILKAIYYPNGSLIDTSFGGNAS 1518
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
WR++ +LK G WRIG+G ++ +W + WI + P + LR +
Sbjct: 1519 PGWRAIEYGLELLKKGIIWRIGNGKSVRLWRDPWIPRSYSRRP--ISAKRNCRLRWVSDL 1576
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
+ WD + F AI+ L + +++D W+ + G +SVRSAY L +
Sbjct: 1577 IDQSGSWDTDKISQHFLPMDAEAILNIRLSSRLEDDFIAWHPDKLGRFSVRSAYHLAV-A 1635
Query: 542 LLDISEFKVLG------AWDYIWNLKVPPKVKNLVWRVARNILPT 580
L + E AW+ +W P KVK WR N LPT
Sbjct: 1636 LAHVDEGSSSSGNGNSRAWNALWKCNAPQKVKIFAWRAITNSLPT 1680
>gb|AAD24601.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|25411729|pir||H84542 hypothetical protein
At2g16680 [imported] - Arabidopsis thaliana
Length = 1319
Score = 455 bits (1171), Expect = e-126
Identities = 270/868 (31%), Positives = 444/868 (51%), Gaps = 34/868 (3%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K+L+ +LK+ L +S +QS F R I
Sbjct: 439 THLYLIPKFTNPQRMSDIRPISLCSVLYKIISKILSFKLKKHLPSIVSPSQSAFFAERLI 498
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+VH +T K ++ + FK D+SKAYDR++W++L+ +++ +GF+ +W+ WI
Sbjct: 499 SDNILIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWI 558
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G I RG+RQGDP+S +LF++C E L ++++AE S + G
Sbjct: 559 MGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSG 618
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ + P V+HLLF DD L RA S+ M L SGQ IN +KS I F
Sbjct: 619 IQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISGQLINVEKSSITFGVK 678
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ + I N + GTGKYLGLP SK+ F +IK+++ ++ W K LS+
Sbjct: 679 VDEDTKRWIKNRSGIHLEGGTGKYLGLPENLSGSKQDLFGYIKEKLQSHLSGWYDKTLSQ 738
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+E+L+KS+ ++P Y M+ F LP LC ++ ++ FWW +S +HW+ +L
Sbjct: 739 GGKEILLKSIALALPVYIMTCFRLPKGLCTKLTSVMMDFWW-NSMEFSNKIHWIGGKKLT 797
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K+ GG FK L FN A+L KQ WR ++ +++++I+K+RYF DFL + G PS
Sbjct: 798 LPKSLGGFGFKDLQCFNQALLAKQAWRLFSDSKSIVSQIFKSRYFMNTDFLNARQGTRPS 857
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ + +L G + IG+G+ ++W +KW+ + P + H++VSH +
Sbjct: 858 YTWRSILYGRELLNGGLKRLIGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLI 917
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAY----RL 537
+ W++ L +F ++ V I+ S ED + W NNG Y+V+S Y R
Sbjct: 918 DPLTRNWNLKKLTELFHEKDVQLIMHQRPLIS-SEDSYCWAGTNNGLYTVKSGYERSSRE 976
Query: 538 CMQKLLDISEF--KVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
+ L ++ V +D +W+L+ PK+K +W+ + L RLR + + C
Sbjct: 977 TFKNLFKEADVYPSVNPLFDKVWSLETVPKIKVFMWKALKGALAVEDRLRSRGIRTADGC 1036
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAVIFHLLQ-----VLS 650
+ C E HL F CP + +W LS + G + + I H++Q +
Sbjct: 1037 LFCKEEIETINHLLFQCPFARQVWALSLIQAP---ATGFGTSIFSNINHVIQNSQNFGIP 1093
Query: 651 AGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVNGD 710
+ +LW IWK RN ++ + ++ +A + N NA+ ++
Sbjct: 1094 RHMRTVSPWLLWEIWKNRNKTLFQGTGLTSSEIVAKAYE---ECNLWINAQEKSSGGVSP 1150
Query: 711 GEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTPKC 770
EH KW+ P G +KCNI ++ + G+ +RD G ++ + +
Sbjct: 1151 SEH-------KWNPPPAGELKCNIGVAWSRQKQLAGVSWVLRDSMGQVLLHSRRSYSQVY 1203
Query: 771 DVHIGEALGLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHDSTEFGAIINDCKTLFN 830
+ + AL+ + + F S ++ + H E+ +I F
Sbjct: 1204 SLFDAKIKSWDWALESMDHFHFDKVTFAATSHDIIKAL----HKPNEWPMLIGHIAE-FL 1258
Query: 831 HFYENSSVEFV---RRQANEAAHELAKA 855
F ++ S F+ Q N A E+AK+
Sbjct: 1259 SFTKDISDWFMMMESTQCNNGAAEIAKS 1286
>pir||G96509 protein F27F5.21 [imported] - Arabidopsis thaliana
gi|7767672|gb|AAF69169.1| F27F5.21 [Arabidopsis
thaliana]
Length = 1023
Score = 455 bits (1170), Expect = e-126
Identities = 234/605 (38%), Positives = 350/605 (57%), Gaps = 30/605 (4%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
TNI LIPK + M + RPI+LCNV YKI +K+L RLK++L IS+ S FV GR I
Sbjct: 337 TNICLIPKTERPTRMTELRPISLCNVGYKIISKILCQRLKKILPSLISETHSAFVEGRLI 396
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+ H +T +A K D+SKAYDR++WN+++ ++ KMGF +W+ WI
Sbjct: 397 SDNILIAQEMFHGLRTNPSCKGKFMAIKTDMSKAYDRVEWNFIEELLKKMGFCEKWISWI 456
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M C+ TV Y V++N + G I+ RGLRQGDPLS YLFI+C E L + IRKAE I G
Sbjct: 457 MWCITTVQYRVLLNGQPRGLIVPKRGLRQGDPLSPYLFILCTEVLIANIRKAEQEKLITG 516
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
+K+ +P VSHLLFA+D F +A + V+ IL+ E+ SGQ IN+ KS I F
Sbjct: 517 IKVATASPSVSHLLFANDSLFFCKANKEQCGVILGILKQYEAVSGQMINFSKSSIQFGHK 576
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
+ I + L + ++ G G YLGLP G SK F+F++DR+ +IN WS+K LSK
Sbjct: 577 VGDDIKAEIKSALGIHSIGGMGSYLGLPESLGGSKTRIFSFVRDRLQTRINGWSAKFLSK 636
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+EV++KS++ +PTY MS F LP ++ ++ + FWW G + RG+HW++W++L
Sbjct: 637 GGKEVMIKSVVAVLPTYVMSCFRLPKTITSKLTSAVAKFWWSSDG-ESRGMHWMAWNKLC 695
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
+ K DGG+ F+S+ FN A+L KQ WR +T PD+L A+++K RYF + + L ++PS
Sbjct: 696 SSKADGGLGFRSVNDFNSALLAKQLWRLITVPDSLFAKVFKGRYFRKSNPLDKLKSYSPS 755
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y WRS+ +++ ++K G R+G G +IS+W + WI + G L+V++ +
Sbjct: 756 YGWRSIISARSLVKKGLINRVGSGASISVWEDPWIPAQFPRPAISNGSVIDPSLKVNNLI 815
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLCMQK 541
W++ FL IF + V I L +S KED
Sbjct: 816 DSRSNFWNIDFLNEIFVPEDVLLISAMHLGSSTKEDS----------------------- 852
Query: 542 LLDISEFKVLGAWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHCVLCNSA 601
LDI K +IW ++ PPK+++ +W+V +P LR++ +NC C C +
Sbjct: 853 -LDIKTLKA-----HIWKVQCPPKLRHFLWQVLSGCVPVTENLRKRGINCDSGCARCATG 906
Query: 602 DEDSL 606
+ ++
Sbjct: 907 EPPTM 911
>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana] gi|7488322|pir||T00814 RNA-directed DNA
polymerase homolog At2g41580 - Arabidopsis thaliana
Length = 1094
Score = 448 bits (1153), Expect = e-124
Identities = 262/827 (31%), Positives = 427/827 (50%), Gaps = 43/827 (5%)
Query: 2 TNIALIPKGDMQVSMKDWRPIALCNVVYKIAAKVLANRLKRVLDKCISDNQSPFVPGRSI 61
T++ LIPK M D RPI+LC+V+YKI +K+L+ RLK+ L +S QS FV R +
Sbjct: 216 THLCLIPKITKPARMADIRPISLCSVMYKIISKILSARLKKYLPVIVSPTQSAFVAERLV 275
Query: 62 LDNAMAAIELVHYKKTKVKGTQGDVAFKLDISKAYDRIDWNYLKCVMLKMGFSIQWVKWI 121
DN + A E+VH +T K ++ + FK D+SKAYDR++W +LK ++L +GF+ W+ W+
Sbjct: 276 SDNIILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWM 335
Query: 122 MMCVETVDYSVIVNEEIAGPIIHGRGLRQGDPLSTYLFIICAEGLSSLIRKAEASGTIHG 181
M CV +V YSV++N + G I RGLRQGDPLS +LF++C E L ++ +AE G I G
Sbjct: 336 MACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISG 395
Query: 182 VKICNNAPIVSHLLFADDCFLFFRAEPSEAMVMKNILEVNESASGQAINYQKSEIFFSRN 241
++ P V+HLLFADD L +A E + + L SGQ IN +KS I F
Sbjct: 396 IQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHISGQMINSEKSAITFGAK 455
Query: 242 GSQSKQLNIPNILQVQAVLGTGKYLGLPSMTGRSKKATFNFIKDRIWKKINSWSSKCLSK 301
++ + I N +Q GTGKYLGLP SK+ F FIK+++ +++ W +K LS+
Sbjct: 456 VNEETKQWIMNRSGIQTEGGTGKYLGLPECFQGSKQVLFGFIKEKLQSRLSGWYAKTLSQ 515
Query: 302 AGREVLMKSMLQSIPTYFMSIFTLPTSLCDEIEKMLNSFWWGHSGTQGRGLHWLSWDRLA 361
G+++L+KS+ + P Y M+ F L +LC ++ ++ FWW +S + +HW+ +L
Sbjct: 516 GGKDILLKSIAMAFPVYAMTCFRLSKTLCTKLTSVMMDFWW-NSVQDKKKIHWIGAQKLM 574
Query: 362 AHKNDGGMSFKSLPVFNLAMLGKQGWRSMTNPDTLIARIYKARYFPRCDFLQSSLGHNPS 421
K GG FK L FN A+L KQ R T+ D+L+++I K+RY+ DFL ++ G PS
Sbjct: 575 LPKFLGGFGFKDLQCFNQALLAKQASRLHTDSDSLLSQILKSRYYMNSDFLSATKGTRPS 634
Query: 422 YVWRSLCNSKFILKAGSRWRIGDGDTISIWNNKWIAGDITLIPPTVGDFHLSHLRVSHCM 481
Y W+S+ + +L +G + IG+G+ +W + WI D P ++ L+VS +
Sbjct: 635 YAWQSILYGRELLVSGLKKIIGNGENTYVWMDNWIFDDKPRRPESLQIMVDIQLKVSQLI 694
Query: 482 LQHHKMWDVPFLETIFDQQTVAAIIKTSLYTSIKEDRFVWNKENNGEYSVRSAYRLC--- 538
+ W++ L +F + + I + S ++D F W N+G Y+V+S Y LC
Sbjct: 695 DPFSRNWNLNMLRDLFPWKEIQIICQQRPMAS-RQDSFCWFGTNHGLYTVKSEYDLCSRQ 753
Query: 539 --MQKLLDISEFKVLG-AWDYIWNLKVPPKVKNLVWRVARNILPTRMRLREKIVNCPPHC 595
Q + E L + IWNL PK+K +W+V + + RLR + V C
Sbjct: 754 VHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLIEDGC 813
Query: 596 VLCNSADEDSLHLFFNCPSSSNIWNLSNLSNDVKIVVSQGLNSSAV--IFHLL-----QV 648
+C +E H+ F CP + +W L+ + + + G S + H++
Sbjct: 814 SMCPEKNETLNHILFQCPLARQVWALTPMQSP-----NHGFGDSIFTNVNHVIGNCHNTE 868
Query: 649 LSAGESALFATILWSIWKQRNNKIWNDVTDAQNFVLERASSLLYDWNAARNARLNNNVVN 708
LS + I+W +WK RN +++ + ++ +A +W A +
Sbjct: 869 LSPHLRYVSPWIIWILWKNRNKRLFEGIGSVSLSIVGKALEDCKEWLKAHELICS----- 923
Query: 709 GDGEHSQSTRVIKWSKPNRGRMKCNIDASFPNNENRIGIGICIRDDEGAFVIARTKCLTP 768
+ T+ + W P +KCNI ++ G+ +R+ +G V+ ++C
Sbjct: 924 -----KEPTKDLTWIPPLMNELKCNIGIAWSKKHQMAGVSWVVRNWKGR-VLLHSRCSFS 977
Query: 769 KCDVHIGEAL-GLLTALQWVHELQLGPIEFELDSKKVVDSFGANRHD 814
+ H + G A++ + + + + +FGA+ HD
Sbjct: 978 QISSHFDAKIKGWNYAVESMDQFKFDRV-----------TFGASTHD 1013
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.322 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,535,200,097
Number of Sequences: 2540612
Number of extensions: 64139466
Number of successful extensions: 128336
Number of sequences better than 10.0: 1233
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 455
Number of HSP's that attempted gapping in prelim test: 125383
Number of HSP's gapped (non-prelim): 1744
length of query: 881
length of database: 863,360,394
effective HSP length: 137
effective length of query: 744
effective length of database: 515,296,550
effective search space: 383380633200
effective search space used: 383380633200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)
Medicago: description of AC138579.1