BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138453.6 - phase: 0 /pseudo
(667 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cu... 46 0.003
gb|AAT38786.1| putative gag-pol polyprotein [Solanum demissum] 46 0.004
ref|XP_507106.1| PREDICTED OJ1499_A07.20 gene product [Oryza sat... 45 0.008
ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cul... 45 0.010
gb|AAP03376.1| putative gag-pol polyprotein [Oryza sativa (japon... 45 0.010
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 44 0.013
emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar... 44 0.013
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 44 0.013
emb|CAA36615.1| unnamed protein product [Solanum tuberosum] gi|4... 44 0.013
gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana] 44 0.013
gb|AAP53009.1| putative polyprotein [Oryza sativa (japonica cult... 44 0.017
ref|XP_475856.1| putative polyprotein [Oryza sativa (japonica cu... 44 0.017
ref|NP_916659.1| putative copia-type polyprotein [Oryza sativa (... 44 0.017
emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa (japonica cultivar... 44 0.017
ref|XP_470888.1| putative gag-pol polyprotein [Oryza sativa (jap... 44 0.017
gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cult... 44 0.017
dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsi... 44 0.017
gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japon... 44 0.022
gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (j... 44 0.022
gb|AAP54573.1| putative polyprotein [Oryza sativa (japonica cult... 44 0.022
>ref|XP_470422.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|27573360|gb|AAO20078.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1299
Score = 46.2 bits (108), Expect = 0.003
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
NN+F F GI HQ QNGV ERK + L + Y + + + +
Sbjct: 459 NNEFSSFLSSEGILHQTSCPDTPPQNGVAERKNRHLLETARSLMYAMNVPKFLWSEAVMT 518
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQ 176
L+N PSR++ KTP E F N+
Sbjct: 519 ATYLINRTPSRILGMKTPCEMIFGKNE 545
>gb|AAT38786.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1133
Score = 45.8 bits (107), Expect = 0.004
Identities = 31/108 (28%), Positives = 49/108 (44%), Gaps = 11/108 (10%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N F F ++ GI HQ QNGV+ERK + + + + K + + + +
Sbjct: 575 SNQFKDFLQKAGIHHQLTVTYTPQQNGVSERKNRSIMNMARCLLFEKGLPKVLWAEAVNT 634
Query: 150 CNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFILYNRLKE 197
L N LP+R + KTP+E W T L VF I Y+ + +
Sbjct: 635 AVYLQNRLPTRAVEGKTPYEAWIGTKPSVS---HLKVFGCICYSYIPD 679
>ref|XP_507106.1| PREDICTED OJ1499_A07.20 gene product [Oryza sativa (japonica
cultivar-group)]
Length = 1427
Score = 45.1 bits (105), Expect = 0.008
Identities = 24/82 (29%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + CE+ GI+ QQNGV ER+ + + + + + G+ ++
Sbjct: 630 SGEFAQLCEQAGIQRHLTAPYSPQQNGVVERRNRSVMAMARSLMKGMSVPGRFWGEAVRH 689
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M +TPFE W
Sbjct: 690 AVYLLNRLPTKAMGDRTPFEAW 711
>ref|XP_469280.1| gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
gi|29150404|gb|AAO72413.1| gag-pol polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1339
Score = 44.7 bits (104), Expect = 0.010
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + C+ GIE QQNGV ER+ + + + + + G+ ++
Sbjct: 583 SGEFARVCDAAGIERHLTVPYSPQQNGVVERRNRTVMAMARSLLKGMSVPGRMWGEAVRH 642
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M +TPFE W
Sbjct: 643 AVFLLNRLPTKAMGNRTPFEAW 664
>gb|AAP03376.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50881451|gb|AAT85296.1| integrase
core domain containing protein [Oryza sativa (japonica
cultivar-group)]
Length = 783
Score = 44.7 bits (104), Expect = 0.010
Identities = 29/83 (34%), Positives = 42/83 (49%), Gaps = 11/83 (13%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+N+F FCEEYGI H Q NGV ERK + + ++ G+ +
Sbjct: 115 SNEFTSFCEEYGIIHERTHPYSPQSNGVAERKNRTLTEMVNAMLDSAGLSKEWWGEAILT 174
Query: 150 CNILLNMLPSRVMHKK-TPFETW 171
+LN++P++ HKK TPFE W
Sbjct: 175 ACHVLNIIPTK--HKKVTPFEEW 195
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 44.3 bits (103), Expect = 0.013
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 572 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 631
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 632 AVYILNRSPSKALNDITPEEKW 653
>emb|CAE04541.2| OSJNBa0040D17.9 [Oryza sativa (japonica cultivar-group)]
gi|50930491|ref|XP_474773.1| OSJNBa0040D17.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1319
Score = 44.3 bits (103), Expect = 0.013
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNYVLNRVPNR-NKDKTPYEIW 646
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 44.3 bits (103), Expect = 0.013
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 572 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 631
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 632 AVYILNRSPSKALNDITPEEKW 653
>emb|CAA36615.1| unnamed protein product [Solanum tuberosum] gi|421954|pir||S25786
hypothetical protein 3 - potato transposon Tst1
Length = 675
Score = 44.3 bits (103), Expect = 0.013
Identities = 25/82 (30%), Positives = 38/82 (45%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEHQ--------QNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
N F + G+ HQ QNG+ ERK + L + + K+ Q G+ L
Sbjct: 235 NEQLGSFFRKTGVVHQSSCPDTPQQNGIAERKNRHLLEATRALMFTSKVPQHLWGEALLT 294
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
L+N +PSR + KTPF+ +
Sbjct: 295 ATYLINRMPSRPLEFKTPFKVF 316
>gb|AAF25964.2| F6N18.1 [Arabidopsis thaliana]
Length = 1207
Score = 44.3 bits (103), Expect = 0.013
Identities = 24/82 (29%), Positives = 42/82 (50%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +FD++C+E+GI+ QQNGV ERK + + + + +K + +Q
Sbjct: 477 SREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQY 536
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
+LN PS+ ++ TP E W
Sbjct: 537 AVYILNRSPSKALNDITPEEKW 558
>gb|AAP53009.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37532840|ref|NP_920722.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16905212|gb|AAL31082.1| putative polyprotein [Oryza
sativa]
Length = 836
Score = 43.9 bits (102), Expect = 0.017
Identities = 29/94 (30%), Positives = 48/94 (50%), Gaps = 15/94 (15%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 306 SNEFDLFCEEHGIIHERTSLYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 362
Query: 147 LQKCNILLNMLPSRVMHKKTPFETWFVTNQIYKV 180
L N +LN +P+R KTP+E W +++
Sbjct: 363 LLTSNHVLNRVPNR-NKDKTPYEIWIGRKHHFRI 395
>ref|XP_475856.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50878407|gb|AAT85181.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|47900532|gb|AAT39267.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|47900502|gb|AAT39259.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1297
Score = 43.9 bits (102), Expect = 0.017
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTLNHVLNRVPNR-NKNKTPYEIW 646
>ref|NP_916659.1| putative copia-type polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 1433
Score = 43.9 bits (102), Expect = 0.017
Identities = 24/82 (29%), Positives = 41/82 (49%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + CEE GI+ QQNG ER+ + + + ++ + G+ ++
Sbjct: 632 SGEFAQVCEEAGIQRHLTAPYSPQQNGAVERRNRTVMAMARSLLKGMRVPGRFWGEAVRH 691
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M +TPFE W
Sbjct: 692 AVHLLNRLPTKAMGDRTPFEAW 713
>emb|CAE02261.2| OSJNBb0058J09.8 [Oryza sativa (japonica cultivar-group)]
gi|50922317|ref|XP_471519.1| OSJNBb0058J09.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1282
Score = 43.9 bits (102), Expect = 0.017
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 19/105 (18%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 479 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 535
Query: 147 LQKCNILLNMLPSRVMHKKTPFETWFVTNQIYKV*RFLFVFAFIL 191
L N +LN +P+R KTP+E W I FLF +L
Sbjct: 536 LLTSNHVLNRVPNR-NKDKTPYEIWIGRKTI----TFLFAHMGVL 575
>ref|XP_470888.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|30017513|gb|AAP12935.1|
retrotransposon protein, putative, unclassified [Oryza
sativa (japonica cultivar-group)]
Length = 1283
Score = 43.9 bits (102), Expect = 0.017
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F + C+E GIE QQNGV E + + + + + + G+ ++
Sbjct: 623 SGEFARVCDEAGIERHLTAPYSPQQNGVVEHRNRSVMAMARSLLKGMSVPGRMWGEAVRH 682
Query: 150 CNILLNMLPSRVMHKKTPFETW 171
LLN LP++ M + TPFE W
Sbjct: 683 AVFLLNRLPTKSMGEHTPFEAW 704
>gb|AAU44026.2| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1391
Score = 43.9 bits (102), Expect = 0.017
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 655 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 711
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 712 LLTSNHVLNRIPNR-NKDKTPYEIW 735
>dbj|BAB01972.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1499
Score = 43.9 bits (102), Expect = 0.017
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 98 NNDFDKFCEEYGIEH--------QQNGVNERKKKEALWRWKDACYMKKIFQKSCGQRLQK 149
+ +F K C+E GI H QQNGV ER+ + + + KK+ K + +
Sbjct: 592 SREFIKLCQESGIHHEITTPYSPQQNGVAERRNRTLVEMARSMIEEKKLSNKFWAEAIAT 651
Query: 150 CNILLNMLPSRVMHK-KTPFETW 171
L N LPS+ + K TP E W
Sbjct: 652 STYLQNRLPSKSLEKGVTPMEIW 674
>gb|AAR01682.1| putative gag and pol protein [Oryza sativa (japonica
cultivar-group)] gi|50918819|ref|XP_469806.1| putative
gag and pol protein [Oryza sativa (japonica
cultivar-group)]
Length = 1302
Score = 43.5 bits (101), Expect = 0.022
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
>gb|AAR01716.1| putative Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|50900582|ref|XP_462724.1| putative
Gag and Pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|34913798|ref|NP_918246.1| putative
polyprotein from transposon TNT 1-94 [Oryza sativa
(japonica cultivar-group)]
Length = 1302
Score = 43.5 bits (101), Expect = 0.022
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
>gb|AAP54573.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37535968|ref|NP_922286.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15144313|gb|AAK84454.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1308
Score = 43.5 bits (101), Expect = 0.022
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 98 NNDFDKFCEEYGIEHQQ--------NGVNERKKK---EALWRWKDACYMKKIFQKSCGQR 146
+N+FD FCEE+GI H++ NG+ ERK + + + D + K + G+
Sbjct: 566 SNEFDLFCEEHGIIHERTPPYSPESNGIAERKNRTLTDLVNAMLDTAGLPKAW---WGEA 622
Query: 147 LQKCNILLNMLPSRVMHKKTPFETW 171
L N +LN +P+R KTP+E W
Sbjct: 623 LLTSNHVLNRVPNR-NKDKTPYEIW 646
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.367 0.164 0.589
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 815,595,257
Number of Sequences: 2540612
Number of extensions: 27044182
Number of successful extensions: 148374
Number of sequences better than 10.0: 181
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 148220
Number of HSP's gapped (non-prelim): 231
length of query: 667
length of database: 863,360,394
effective HSP length: 135
effective length of query: 532
effective length of database: 520,377,774
effective search space: 276840975768
effective search space used: 276840975768
T: 11
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 79 (35.0 bits)
Medicago: description of AC138453.6