BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC138133.11 - phase: 0
(206 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45752.1| pol protein [Cucumis melo] 242 4e-63
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 232 4e-60
gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum] g... 232 6e-60
gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum] 232 6e-60
gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica ... 219 5e-56
gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsi... 216 4e-55
gb|AAT66771.1| putative polyprotein [Solanum demissum] 211 1e-53
gb|AAV31169.1| putative polyprotein [Solanum tuberosum] 210 2e-53
emb|CAC44107.1| putative polyprotein [Cicer arietinum] 210 2e-53
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 209 4e-53
gb|AAT39954.1| putative integrase [Solanum demissum] 208 9e-53
emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar... 207 1e-52
gb|AAL59229.1| gag-pol [Zea mays] 207 1e-52
gb|AAD22158.1| polyprotein [Sorghum bicolor] 207 2e-52
emb|CAB46045.1| retrotransposon like protein [Arabidopsis thalia... 206 3e-52
gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-... 206 3e-52
ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cu... 205 6e-52
ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy ty... 205 6e-52
ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultiva... 204 1e-51
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 204 1e-51
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 242 bits (618), Expect = 4e-63
Identities = 117/205 (57%), Positives = 148/205 (72%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGR CR+P+CW E GE ++GP+LVQ T E ++ IR +M +QSRQKSY D R
Sbjct: 717 MAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR 776
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
RK LEF+ GD VFL+V PM GV R + KL+P+F+GP++I ERIG VAYR+ LPP LS
Sbjct: 777 RKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLST 836
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+HDVFHVS LRKYV DPSHV+ + +++ +NL+ P+ + R VK LR K+IPLV+V+
Sbjct: 837 VHDVFHVSMLRKYVPDPSHVVDYEPLEIDENLSYVEQPVEVLARGVKTLRNKQIPLVKVL 896
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E MR YPELF
Sbjct: 897 WRNHRVEEATWEREDDMRSRYPELF 921
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 232 bits (592), Expect = 4e-60
Identities = 107/205 (52%), Positives = 154/205 (74%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAP+EALYGRRCR+P+ WFE GE+ ++GPDLV + EKVK+I+E++K +QSRQKSY D R
Sbjct: 1391 MAPYEALYGRRCRSPIGWFEVGEARLIGPDLVHQAMEKVKVIQERLKTAQSRQKSYTDVR 1450
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+I +R+G+VAY + LP L+
Sbjct: 1451 RRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIVQRVGSVAYELELPQELAA 1510
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFH+S L+K + DPS ++P + V+++DNL+ E +P++I DR+V+ LR K++ V+V+
Sbjct: 1511 VHPVFHISMLKKCIGDPSLILPTESVKIKDNLSYEEVPVQILDRQVRRLRTKDVASVKVL 1570
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E M+ YP LF
Sbjct: 1571 WRNQFVEEATWEAEEDMKKRYPHLF 1595
>gb|AAT38792.1| putative gag-pol polyprotein [Solanum demissum]
gi|47825020|gb|AAT38791.1| putative gag-pol polyprotein
[Solanum demissum]
Length = 1351
Score = 232 bits (591), Expect = 6e-60
Identities = 107/205 (52%), Positives = 153/205 (74%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAP+EALYGRRCR+P+ WFE GE+ ++GPDLV + EKVK+I+E++K +QSRQKSY D R
Sbjct: 1140 MAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQAMEKVKVIKERLKTAQSRQKSYTDVR 1199
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+I++RIG VAY + LP L+
Sbjct: 1200 RRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAA 1259
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFH+S L+K + DPS ++P + +++ DNL+ E +P++I DR+V+ LR K++ V+V+
Sbjct: 1260 VHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVL 1319
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E M+ YP LF
Sbjct: 1320 WRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAT38790.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1351
Score = 232 bits (591), Expect = 6e-60
Identities = 107/205 (52%), Positives = 153/205 (74%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAP+EALYGRRCR+P+ WFE GE+ ++GPDLV + EKVK+I+E++K +QSRQKSY D R
Sbjct: 1140 MAPYEALYGRRCRSPIGWFEVGEAQLIGPDLVHQAMEKVKVIKERLKTAQSRQKSYTDVR 1199
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ALEF+ D V+L+V+PM GV R K KL+P++IGPY+I++RIG VAY + LP L+
Sbjct: 1200 RRALEFEVDDWVYLKVSPMKGVMRFGKKGKLSPRYIGPYRIAKRIGNVAYELELPQELAA 1259
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFH+S L+K + DPS ++P + +++ DNL+ E +P++I DR+V+ LR K++ V+V+
Sbjct: 1260 VHPVFHISMLKKCIGDPSLILPTESIKINDNLSYEEVPVQILDRQVRRLRTKDVASVKVL 1319
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E M+ YP LF
Sbjct: 1320 WRDQFVEEATWEAEEDMKKKYPYLF 1344
>gb|AAQ56285.1| putative gag-pol protein [Oryza sativa (japonica cultivar-group)]
Length = 552
Score = 219 bits (557), Expect = 5e-56
Identities = 103/206 (50%), Positives = 145/206 (70%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGR+C +PLCW GE +LGP++V++T++KV+ I + M A+QSRQKSY D R
Sbjct: 341 MAPFEALYGRKCVSPLCWESLGERALLGPEIVEQTSKKVQEIGQNMLAAQSRQKSYADTR 400
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF GD V LRV+P G+ R + KL+P++IGP+ I+ R+G++AYR+ LP ++
Sbjct: 401 RRDLEFAVGDQVLLRVSPTKGIVRFGTTGKLSPRYIGPFVITARVGSLAYRLQLPESMNG 460
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+HDVFHVS LRKY+ DP H I + + V +LT+E P+RI D + +R + I V+V+
Sbjct: 461 VHDVFHVSMLRKYLRDPEHKIDLEPIMVEQDLTIECRPVRIFDWSERVMRRRTIKYVKVL 520
Query: 181 WGGATGESLTWELESKMRDSYPELFV 206
W + TWELE +M+ YPELFV
Sbjct: 521 WTNQSEREATWELEEEMKKKYPELFV 546
>gb|AAD20658.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
gi|25411368|pir||G84493 probable retroelement pol
polyprotein [imported] - Arabidopsis thaliana
Length = 1611
Score = 216 bits (549), Expect = 4e-55
Identities = 101/205 (49%), Positives = 141/205 (68%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P+EALYGR CRTPLCW GE + GP +V ETTE++K ++ K+K +Q RQKSY +KR
Sbjct: 1378 MSPYEALYGRACRTPLCWTPVGERRLFGPTIVDETTERMKFLKIKLKEAQDRQKSYANKR 1437
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
RK LEFQ GD V+L+ G GR +KL+P+++GPY++ ER+G VAY++ LPP L+
Sbjct: 1438 RKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERVGAVAYKLDLPPKLNA 1497
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
H+VFHVSQLRK ++D + +++N+TVE P+RI DR K RGK L++V+
Sbjct: 1498 FHNVFHVSQLRKCLSDQEESVEDIPPGLKENMTVEAWPVRIMDRMTKGTRGKARDLLKVL 1557
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E+KM+ ++PE F
Sbjct: 1558 WNCRGREEYTWETENKMKANFPEWF 1582
>gb|AAT66771.1| putative polyprotein [Solanum demissum]
Length = 1769
Score = 211 bits (536), Expect = 1e-53
Identities = 103/205 (50%), Positives = 141/205 (68%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGRRCR+P+ WFES E G DL+QE ++V++I+++++ +QSR +SY D+R
Sbjct: 1559 MAPFEALYGRRCRSPVGWFESTEPRPRGTDLLQEALDQVRVIQDRLRTAQSRHQSYADQR 1618
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ L F GD VFLRV+PM GV R + KL+P++IGP++I +G VAY + LPP S
Sbjct: 1619 RRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSA 1678
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHVS LR+YV D SHV+ D V++ D LT P+ I R V+ LR + IP+V+V
Sbjct: 1679 IHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVR 1738
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E +MR+ +P LF
Sbjct: 1739 WRHRPVEEATWETEQEMREQFPSLF 1763
>gb|AAV31169.1| putative polyprotein [Solanum tuberosum]
Length = 394
Score = 210 bits (535), Expect = 2e-53
Identities = 102/205 (49%), Positives = 142/205 (68%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGRRC +P+ WFES E + G DL+QE ++V++I+++++ +QSR +SY D+R
Sbjct: 184 MAPFEALYGRRCHSPVGWFESTEPRLRGTDLLQEALDQVRVIQDRLRTAQSRHQSYADQR 243
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ L F GD VFLRV+PM GV R + KL+P++IGP++I +G VAY + LPP S
Sbjct: 244 RRPLRFSVGDRVFLRVSPMKGVMRFGRRGKLSPRYIGPFEILRTVGEVAYELALPPVFSA 303
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHVS LR+YV D SHV+ D V++ D LT P+ I R V+ LR + IP+V+V
Sbjct: 304 IHPVFHVSMLRRYVPDESHVLQYDAVELDDRLTFVEEPVAILARDVRRLRSRAIPVVKVR 363
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W + E TWE E +MR+ +P LF
Sbjct: 364 WRHCSVEEATWETEQEMREQFPGLF 388
>emb|CAC44107.1| putative polyprotein [Cicer arietinum]
Length = 141
Score = 210 bits (535), Expect = 2e-53
Identities = 99/140 (70%), Positives = 120/140 (85%), Gaps = 1/140 (0%)
Query: 67 QEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSNLHDVFH 126
++GDHVFLRVTP TGVGRALKS+KLTPKFIGPYQIS RIG VAYR+ LPP LSN+HDVFH
Sbjct: 1 EQGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQISARIGPVAYRIALPPILSNIHDVFH 60
Query: 127 VSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVVWGGATG 186
VSQLRKY+ADPSHVI D +Q++DNL+ E P+RIDD K+K LR K++ LV+V+W TG
Sbjct: 61 VSQLRKYLADPSHVIEPDTIQLKDNLSFEVPPVRIDDMKIKRLRTKDVSLVKVIWNPITG 120
Query: 187 ESLTWELESKMRDSYPELFV 206
++ TWELESKMR+ +PELF+
Sbjct: 121 DA-TWELESKMREQHPELFI 139
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 209 bits (532), Expect = 4e-53
Identities = 99/205 (48%), Positives = 139/205 (67%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P EAL+GRRCRTPL W E+GE V GPD++QE EKV++IR+++K +QSRQKSY D R
Sbjct: 1263 MSPNEALFGRRCRTPLMWSETGERAVFGPDIIQEAEEKVRLIRDRLKIAQSRQKSYADTR 1322
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF+EGD+++L+V+PM G R KL P+++GP+QI R G VAY++ LP ++++
Sbjct: 1323 RRNLEFKEGDYIYLKVSPMRGTKRFKVKGKLAPRYVGPFQIIARRGEVAYQLQLPENIAD 1382
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHVSQL+K + P P ++V + ++LT P+RI D K R K + +V
Sbjct: 1383 VHPVFHVSQLKKCLRVPEEQAPLEEVHISNDLTYPEHPIRILDEAAKRTRSKVWRMYKVQ 1442
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W T E TWE E +R YP LF
Sbjct: 1443 WSNHTEEEATWESEEFLRTEYPHLF 1467
>gb|AAT39954.1| putative integrase [Solanum demissum]
Length = 1609
Score = 208 bits (529), Expect = 9e-53
Identities = 101/205 (49%), Positives = 140/205 (68%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGRRCR+P+ WFES E+ G DL+QE ++V++I+++++ +QSR ++Y D+R
Sbjct: 1258 MAPFEALYGRRCRSPVGWFESTEARPRGTDLLQEALDQVRVIQDRLRMAQSRHQNYADRR 1317
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ L F GD VF RV+PM GV R + KL+P++IGP++I +G VAY + LPP S
Sbjct: 1318 RRPLRFSVGDRVFFRVSPMKGVMRFGRRDKLSPRYIGPFEILRTVGEVAYELALPPAFSA 1377
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHV LR+YV D SHV+ D V++ D LT P+ I R VK LR + IP+V+V
Sbjct: 1378 IHPVFHVPMLRRYVPDESHVLQYDAVELDDRLTFVEEPIAILARDVKRLRSRAIPVVKVH 1437
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E +MR+ +P LF
Sbjct: 1438 WRHRPVEEATWETEQEMREQFPVLF 1462
>emb|CAD41450.1| OSJNBa0019D11.8 [Oryza sativa (japonica cultivar-group)]
gi|50926528|ref|XP_473211.1| OSJNBa0019D11.8 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 207 bits (527), Expect = 1e-52
Identities = 98/205 (47%), Positives = 138/205 (66%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P EAL+GRRCRTPL W E+GE V GPD++QE EKV++IR+++K +QSRQKSY D R
Sbjct: 1263 MSPNEALFGRRCRTPLMWSETGERAVFGPDIIQEAEEKVRLIRDRLKVAQSRQKSYADTR 1322
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF+EGD+V+L+V+PM G R KL P+++GP+QI+ R G VAY++ LP +++
Sbjct: 1323 RRNLEFKEGDYVYLKVSPMRGTKRFKVKGKLAPRYVGPFQITARRGEVAYQLQLPENIAE 1382
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHVSQL+K + P P +++ + ++LT P+RI D K R K + +V
Sbjct: 1383 VHPVFHVSQLKKCLRVPEEQAPLEEIHISNDLTYPEHPIRILDEAEKRTRSKVWRMYKVQ 1442
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W T TWE E +R YP LF
Sbjct: 1443 WSNHTEAEATWESEEFLRTEYPHLF 1467
>gb|AAL59229.1| gag-pol [Zea mays]
Length = 1470
Score = 207 bits (527), Expect = 1e-52
Identities = 98/205 (47%), Positives = 144/205 (69%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAPFEALYGR+CRTPL W ++GES V GP+++QE ++V++IRE +K +QSRQKSY D R
Sbjct: 1262 MAPFEALYGRKCRTPLYWNQTGESQVFGPEILQEAEKQVQIIRENLKTAQSRQKSYADNR 1321
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ L F+ GD V+L+V+PM G+ R KL+P++IGP++I ER G VAY++ LP LS+
Sbjct: 1322 RRELMFEVGDFVYLKVSPMRGMKRFKVKGKLSPRYIGPFKILERKGEVAYQLELPDRLSD 1381
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+HDVFHVSQL+K + P +P +++ V ++LT P+RI + + R K I + +V
Sbjct: 1382 VHDVFHVSQLKKCLRVPEEQLPMEELNVNEDLTYSEYPVRILETSRRITRSKVINMCKVQ 1441
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W + + TWE E ++R +P+LF
Sbjct: 1442 WSHHSEDEATWEREDELRAEFPQLF 1466
>gb|AAD22158.1| polyprotein [Sorghum bicolor]
Length = 924
Score = 207 bits (526), Expect = 2e-52
Identities = 98/205 (47%), Positives = 134/205 (64%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+PFEALYGR+CRTPL W + GE GPD ++E E V +RE ++ +QSRQKSY D R
Sbjct: 714 MSPFEALYGRKCRTPLIWSQVGERAFFGPDKIKEAEEGVAQVRENLRIAQSRQKSYADNR 773
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF GDHV+L+V+P+ G R KL P+F+GPY+IS+RIG +AYR+ LP +S
Sbjct: 774 RRDLEFYVGDHVYLKVSPLRGTFRFHVKGKLAPRFVGPYRISKRIGKLAYRLELPEEMSG 833
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H VFHVSQLRK + P +P + + +++ L P+RI DR K R P+ +V+
Sbjct: 834 VHPVFHVSQLRKCLKLPEEEVPIETLDLQETLEYREYPVRILDRATKETRSSTFPMCKVL 893
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W T TWE ES+++ YP LF
Sbjct: 894 WSNHTEREATWEKESELQLRYPYLF 918
>emb|CAB46045.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268441|emb|CAB80961.1| retrotransposon like protein
[Arabidopsis thaliana] gi|25407549|pir||F85188
retrotransposon like protein [imported] - Arabidopsis
thaliana
Length = 687
Score = 206 bits (524), Expect = 3e-52
Identities = 97/205 (47%), Positives = 139/205 (67%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P+EALYGR RTPLCW GE + GP +V ETT+K+K ++ K+K +Q RQKSY +KR
Sbjct: 462 MSPYEALYGRAGRTPLCWTPVGERRLFGPAVVDETTKKMKFLKIKLKEAQDRQKSYANKR 521
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
RK LEFQ GD V+L+ G GR +KL P+++GPY++ ER+G VAY++ LPP L
Sbjct: 522 RKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERVGAVAYKLDLPPKLDA 581
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
H+VFHVSQLRK +++ + +++N+TVE P+RI D+ K RGK + L++++
Sbjct: 582 FHNVFHVSQLRKCLSEQEESMEDVPPGLKENMTVEAWPVRIMDQMKKGTRGKSMDLLKIL 641
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E+KM+ ++PE F
Sbjct: 642 WNCGGREEYTWETETKMKANFPEWF 666
>gb|AAX93001.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1761
Score = 206 bits (524), Expect = 3e-52
Identities = 94/204 (46%), Positives = 144/204 (70%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P EA++GR+CRTPLCW E GE++V GPD+++ E+VK+IRE++K +Q+RQK+Y D R
Sbjct: 1556 MSPNEAMFGRKCRTPLCWNEVGEALVFGPDILKAAEEQVKLIRERLKTAQNRQKNYADNR 1615
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF++GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L++
Sbjct: 1616 RRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLAD 1675
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H+VFHVSQL+K + P +P ++++ NLT + P+++ + V+ R K I +V
Sbjct: 1676 VHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAVRQTRRKTIKFYKVQ 1735
Query: 181 WGGATGESLTWELESKMRDSYPEL 204
W + + TWE E +R +PEL
Sbjct: 1736 WSNHSEDEATWEREDLLRAEFPEL 1759
>ref|NP_915313.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1014
Score = 205 bits (522), Expect = 6e-52
Identities = 94/204 (46%), Positives = 143/204 (70%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P EA++GRRCRTPLCW E GE++V GPD+++ E+VK+IRE++K +Q+RQK+Y D R
Sbjct: 809 MSPNEAMFGRRCRTPLCWNEVGEALVFGPDILKSAEEQVKLIRERLKTAQNRQKNYADNR 868
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF++GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L++
Sbjct: 869 RRDLEFEKGDHVYLRVSPLRGMRRFGMSGKLAPRYIGPYLITARRGEVAYQLELPEGLAD 928
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H+VFHVSQL+K + P +P ++++ NLT + P+++ + + R K I +V
Sbjct: 929 VHNVFHVSQLKKCLRVPEEQVPLGNIELEKNLTYKERPIKVLEEAERQTRRKTIKFYKVQ 988
Query: 181 WGGATGESLTWELESKMRDSYPEL 204
W + + TWE E +R +PEL
Sbjct: 989 WSNHSEDEATWEREDLLRAEFPEL 1012
>ref|NP_910342.1| Similar to 22 kDa kafirin cluster; Ty3-Gypsy type (AF061282) [Oryza
sativa (japonica cultivar-group)]
Length = 607
Score = 205 bits (522), Expect = 6e-52
Identities = 94/204 (46%), Positives = 143/204 (70%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
M+P EA++GR+CRTPLCW E GE++V GPD+++ E+VK+IRE++K +QSRQK+Y D R
Sbjct: 402 MSPNEAMFGRKCRTPLCWNEVGEALVFGPDILKSAEEQVKLIRERLKTAQSRQKNYADNR 461
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF++GDHV+LRV+P+ G+ R S KL P++IGPY I+ R G VAY++ LP L++
Sbjct: 462 RRDLEFEKGDHVYLRVSPLRGMRRFGMSSKLAPRYIGPYLITARRGEVAYQLELPEGLAD 521
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+H+VFHVSQL+K + P +P ++++ NLT + P+++ + + R K I +V
Sbjct: 522 VHNVFHVSQLKKCLRVPEEQVPLGNIELERNLTYKERPIKVLEETERQTRRKTIKFYKVQ 581
Query: 181 WGGATGESLTWELESKMRDSYPEL 204
W + + TWE E +R +PEL
Sbjct: 582 WSNHSEDEATWEREDLLRAEFPEL 605
>ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultivar-group)]
gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa
(japonica cultivar-group)]
Length = 1092
Score = 204 bits (520), Expect = 1e-51
Identities = 98/205 (47%), Positives = 138/205 (66%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAP+EALYGR+CRTPL W + GES V GPD+++E KV++IR+ +K +QSRQKSY D R
Sbjct: 876 MAPYEALYGRKCRTPLLWDQVGESQVFGPDILREAEAKVRIIRDNLKVAQSRQKSYADNR 935
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ LEF GD V+LRVTP+ GV R KL P+++GP++I R G VAY++ LP L N
Sbjct: 936 RRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARRGEVAYQLELPASLGN 995
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+HDVFHVSQL+K + PS + ++VR++LT P++I D + R + I +V
Sbjct: 996 VHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYAERPVKILDTMERRTRNRVIRFCKVQ 1055
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W E TWE E +++ ++P+LF
Sbjct: 1056 WSNHAEEEATWEREDELKAAHPDLF 1080
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 204 bits (520), Expect = 1e-51
Identities = 95/205 (46%), Positives = 142/205 (68%)
Query: 1 MAPFEALYGRRCRTPLCWFESGESVVLGPDLVQETTEKVKMIREKMKASQSRQKSYHDKR 60
MAP+EALYGR+CRTPL W ++GE V G D+++E EKVK+I+E+++ +QSRQKSY D R
Sbjct: 1501 MAPYEALYGRKCRTPLLWDQTGERQVFGTDILREAEEKVKIIQERLRVAQSRQKSYADNR 1560
Query: 61 RKALEFQEGDHVFLRVTPMTGVGRALKSRKLTPKFIGPYQISERIGTVAYRVGLPPHLSN 120
R+ L F+EGD+V+LRVTP+ GV R KL P+F+GP++I R G VAY++ LPP ++
Sbjct: 1561 RRDLAFEEGDYVYLRVTPLRGVHRFQTKEKLAPRFVGPFKIVSRRGEVAYQLELPPSMAG 1620
Query: 121 LHDVFHVSQLRKYVADPSHVIPRDDVQVRDNLTVETLPLRIDDRKVKALRGKEIPLVRVV 180
+HDVFHVSQL+K + P+ D ++++++LT P+RI + + R + I +V
Sbjct: 1621 IHDVFHVSQLKKCLRVPTEEADPDRIELQEDLTYVEKPVRILEVSERNTRNRVIRFCKVQ 1680
Query: 181 WGGATGESLTWELESKMRDSYPELF 205
W + E TWE E +++ ++P LF
Sbjct: 1681 WSNHSEEEATWEREDELKSAHPHLF 1705
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.320 0.138 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 343,002,039
Number of Sequences: 2540612
Number of extensions: 13047299
Number of successful extensions: 37169
Number of sequences better than 10.0: 836
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 239
Number of HSP's that attempted gapping in prelim test: 36177
Number of HSP's gapped (non-prelim): 899
length of query: 206
length of database: 863,360,394
effective HSP length: 122
effective length of query: 84
effective length of database: 553,405,730
effective search space: 46486081320
effective search space used: 46486081320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 72 (32.3 bits)
Medicago: description of AC138133.11